mRNA_H-paniculata_contig9351.17125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9351.17125.1 vs. uniprot
Match: A0A6G0VZ61_APHCR (BED-type domain-containing protein (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VZ61_APHCR) HSP 1 Score: 57.0 bits (136), Expect = 4.140e-7 Identity = 34/124 (27.42%), Postives = 57/124 (45.97%), Query Frame = -2 Query: 27 VVEKKEFKDMVGVLNKQAKMPQRR--------------------GVVRRIEHPSLITDVWMSCANDSYQLLTMAYINDESKLVTLVLNCSKKEGSQTEEDMADAIQTFVKDHGLSGHVMTSNTD 338
+VE KEFK ++ +LN +P R+ + + SL TD W S N++Y +T+ +I+ +L + VL C+K T E++ + +Q +K+ GL V TD
Sbjct: 127 IVEDKEFKKLINMLNPGYSLPSRKTLSVSLLPILYNKIYNEVKLDIEVNAHYVSLTTDAWTSLKNENYMAVTVHFIDMSCQLKSYVLQCTKFPERHTSENIKNCLQNTIKNRGLKNKVAACTTD 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9351.17125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9351.17125.1 >prot_H-paniculata_contig9351.17125.1 ID=prot_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp PSFTIDSSQSVLLVITCPERPWSFTNVWIASAMSSSVCEPSFFEQLRTRVback to top mRNA from alignment at H-paniculata_contig9351:5510..5851+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9351.17125.1 ID=mRNA_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig9351:5510..5851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9351:5510..5851+ >mRNA_H-paniculata_contig9351.17125.1 ID=mRNA_H-paniculata_contig9351.17125.1|Name=mRNA_H-paniculata_contig9351.17125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig9351:5510..5851+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |