mRNA_H-paniculata_contig9349.17120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9349.17120.1
Unique NamemRNA_H-paniculata_contig9349.17120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: D8LMQ3_ECTSI (Nitroreductase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ3_ECTSI)

HSP 1 Score: 304 bits (779), Expect = 1.090e-97
Identity = 155/213 (72.77%), Postives = 176/213 (82.63%), Query Frame = 1 
Query:    1 SAPSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPA-SPPPPSAGRDAKPKRWRYPPKEVVFDGSFGVGLEGVEPVV 636
            SAPSSFN+QPWSVV+VRD A RE L TAMLGGNA KVL+APVTAVFCADLEPSKR+ RM +L R+AGM EA+I +   AVNLFSGEGV+GN VR AVT+ ASP QPAPEV+   AWSFKNTALA Q Y+L+CTA GL TAPMEGFDARRVRAALDIPDRYG+P++V TGYPA S P    G     +RWRYPP+EVVFDG+FGVG+ GV+PVV
Sbjct:  103 SAPSSFNIQPWSVVVVRDTAARERLSTAMLGGNAKKVLAAPVTAVFCADLEPSKRINRMVELNRKAGMPEAEITKFCLAVNLFSGEGVVGNAVRNAVTTIASPMQPAPEVASAEAWSFKNTALAVQTYILSCTAHGLDTAPMEGFDARRVRAALDIPDRYGIPIIVPTGYPAPSKPEGQGGGGGVARRWRYPPQEVVFDGTFGVGMTGVDPVV 315
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A835Z3C4_9STRA (Putative nitroreductase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C4_9STRA)

HSP 1 Score: 201 bits (512), Expect = 8.150e-59
Identity = 104/206 (50.49%), Postives = 138/206 (66.99%), Query Frame = 1 
Query:    7 PSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRWRYPPKEVVFDGSFGVGLEGV 624
            P+SFN QPW+ ++VRD+  +E L  AM+G N  KV +AP+TAVF ADL+P++R+PRM + +R AG  E ++ ++ A + LF GEG     +R  VT+A SP +P P V+   AWS+K+  LAAQ Y+LA TA GLATAPMEGFD RRV AALD+PDRYG+ + VATGY      PSA        WR+ P+E+VF   FG  +  V
Sbjct:   30 PTSFNAQPWACIIVRDEEQKEALAQAMVGPNIMKVRAAPLTAVFLADLQPTRRVPRMMEEERRAGTPEERVARLPAMIGLFGGEGAAAEALRRGVTAALSPLKPMPSVTSTEAWSYKHAGLAAQTYLLAATAHGLATAPMEGFDGRRVCAALDVPDRYGVAVAVATGYEDPQHAPSAAS------WRFAPEEMVFLDRFGAPVPDV 229
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A484DVA5_BRELC (Nitroreductase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVA5_BRELC)

HSP 1 Score: 191 bits (484), Expect = 3.280e-54
Identity = 102/211 (48.34%), Postives = 136/211 (64.45%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRW--RYPPKEVVFDGSFGVGLEGVEP 630
            AP+SFNVQP++ +LVR +  R+ L  AM+GGNA KV+ APV AVF ADLEP+KR+PR+ +L  ++G     +  M   V LFSGEG++ +++R  +++A SP QPAP      AWSFK T+ AA  ++ A    GLAT PMEGFD  RVR ALDIPDRY +P+++A GY        A   AKPK+   R  P E+ FDG FG   + + P
Sbjct:   63 APTSFNVQPYACILVRQEKDRKKLAEAMMGGNARKVIEAPVIAVFAADLEPTKRVPRLQKLAYDSGAPADFVSNMPHVVRLFSGEGMISSMLRKIISTAVSPLQPAPSDVSTEAWSFKQTSFAAATFLYAAQVHGLATCPMEGFDIIRVRNALDIPDRYSVPVVIALGY--------ADPSAKPKKLSERLDPTEMFFDGKFGDSCKKIFP 265
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A1V9ZJF0_9STRA (Nitroreductase family n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJF0_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.800e-53
Identity = 100/208 (48.08%), Postives = 132/208 (63.46%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRWRYPPKEVVFDGSFGVGLEGVE 627
            AP+S N+QP++ +LV+D A RE L  AMLGGN  KVL AP+ AVF ADLEPSKR+P +  + REAG   + +  + A +  F GEG +   +R  +++A SP +P P   PV AW+FK T +AA  +  A  + GLAT  MEGFD  R+R ALDIPDRY +P++VA GYPA     +A RD  P   R P  E+ F G FG  + G+E
Sbjct:   40 APTSLNMQPYACILVQDAAEREALSAAMLGGNVNKVLDAPLVAVFAADLEPSKRVPAVQHMLREAGAHPSSVQSLDAKLRFFGGEGHLAGGIRALISTAVSPLRPVPTYVPVTAWAFKQTMIAATTFTYAAESHGLATQLMEGFDDTRLRHALDIPDRYSVPVVVACGYPADA---NAPRDPSP---RLPSSELFFAGKFGQKVPGLE 241
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: W2YM79_PHYPR (Nitroreductase domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=W2YM79_PHYPR)

HSP 1 Score: 187 bits (474), Expect = 8.780e-53
Identity = 102/209 (48.80%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKR--WRYPPKEVVFDGSFGVGLEGV 624
            AP+ FNVQP++ VLVR++  RE L  AM+  N  KV  APV AVF ADLEPSKR+PR+  L  + G     +  M   V LFSGEGV+ + +R A+ +A SP  PAP      AW+FK TA AA  ++ A    GLAT PMEGFD  RVR ALDIPDRYG+P+++A G+        A  DAKP++   R  P E+ FDG FG   E +
Sbjct:   59 APTGFNVQPYACVLVREQKDREKLAEAMMDSNIRKVKEAPVVAVFAADLEPSKRVPRLQHLMHDNGAPADFVANMPHVVRLFSGEGVVASTLRAAIATAVSPLMPAPSNVSTEAWAFKQTAFAAATFLYAAQTHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGH--------ANPDAKPEKPSARLDPTEIFFDGKFGNSSEKI 259
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A6G0XIZ5_9STRA (Nitroreductase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIZ5_9STRA)

HSP 1 Score: 184 bits (468), Expect = 3.630e-52
Identity = 96/201 (47.76%), Postives = 125/201 (62.19%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRWRYPPKEVVFDGSFG 606
            APS FN+QP++ V+V+D   R  L TAMLG N  KV  AP+ AVF +DLEPSKR+P + QL   AG S A I Q+   +  F GEG +  L+R+ +++A +PFQ  P  +P +AWS+K+T LA   Y+LA  + G+ T  MEGFD  R+R ALDIPDRY +P++V  GYP            KP   R  P EV FDG FG
Sbjct:   38 APSGFNLQPYACVVVQDPDERAQLSTAMLGDNIRKVKDAPLVAVFASDLEPSKRVPAIQQLMETAGQSTADIHQLPMKLRFFGGEGHLAGLIRSGISAAFTPFQAVPTYAPTIAWSYKSTMLAVTHYVLALESHGIGTCVMEGFDETRLRHALDIPDRYSVPVVVTAGYPVE--------STKPLTLRLDPNEVFFDGKFG 230
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: D0NC21_PHYIT (Nitroreductase family, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NC21_PHYIT)

HSP 1 Score: 183 bits (465), Expect = 5.100e-51
Identity = 102/203 (50.25%), Postives = 128/203 (63.05%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKR--WRYPPKEVVFDGSFG 606
            AP+ FNVQP++ VLVR+   RE L  AM+  N  KV  APV AVF ADLEPSKR+PR+ QL  + G S   +  +   V LFSGEGV+ + +R A+ +A SP  P P      AW+FK TALAA  ++ A  A  LAT PMEGFD  RVR ALDIPDRYG+P+++A G+        A  DAKP++   R  P E+ FDG FG
Sbjct:   94 APTGFNVQPYACVLVREPKDREKLAEAMMDSNIRKVKEAPVVAVFAADLEPSKRVPRLQQLAHDNGASADFVANLPHFVRLFSGEGVVASGLRAAIATAVSPLLPVPSNVSTEAWAFKQTALAAATFLYAAQAHDLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGH--------ANPDAKPQKPSVRLDPTEIFFDGKFG 288
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: H3GH55_PHYRM (Nitroreductase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GH55_PHYRM)

HSP 1 Score: 182 bits (461), Expect = 1.230e-50
Identity = 101/207 (48.79%), Postives = 127/207 (61.35%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRWRYPPKEVVFDGSFGVGLEGV 624
            AP+ FN QP++ VLVR++  RE L  AM+  NA KV  APV AVF AD EPSKR+ R+ +L  + G     +  M   V LFSGEGV+ + +R A+ +A SP QPAP      AW+FK T  AA  ++ A    GLAT PMEGFD  RVR ALDIPDRYG+P+++A G+P       A +  KP   R  P EV FDG FG   EG+
Sbjct:   77 APTGFNTQPYACVLVREQKDREKLAEAMMDSNARKVTEAPVVAVFAADCEPSKRVLRLQKLAHDNGAPADFVGNMPHVVRLFSGEGVVASGLRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATFLYAAQVHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGHPNP-----AAKPEKPSV-RLDPTEVFFDGKFGQSSEGI 277
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A225VC66_9STRA (Nitroreductase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VC66_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.780e-50
Identity = 100/206 (48.54%), Postives = 126/206 (61.17%), Query Frame = 1 
Query:    7 PSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRW--RYPPKEVVFDGSFGVGLE 618
            P+ FN  P++ VLVR++  RE L  AM+  N  KV  APV AVF ADLEPS+R+PR+ QL  + G S   +  +   V LFSGEGV+ + +R A+ +A SP QP P      AW+FK TA AA  ++ A  A GLAT PMEGFD  RVR ALDIPDRYG+P+++A G+           D KPK+   R  P EV FDG FG   E
Sbjct:   71 PTCFNTMPYACVLVREQKDREKLAEAMMDSNVRKVKEAPVVAVFAADLEPSQRVPRLQQLAHDHGASVDFVSNLPHVVRLFSGEGVIASALRAAIATAMSPLQPVPSNVSTEAWAFKQTAFAAATFLYAAQAHGLATCPMEGFDQIRVRNALDIPDRYGVPVVIALGH--------ENPDFKPKKQSARLDPTEVFFDGKFGDSSE 268
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BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Match: A0A3R7NF45_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NF45_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.050e-49
Identity = 99/207 (47.83%), Postives = 124/207 (59.90%), Query Frame = 1 
Query:    4 APSSFNVQPWSVVLVRDKAGREDLGTAMLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAAAVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMYMLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPSAGRDAKPKRWRYPPKEVVFDGSFGVGLEGV 624
            AP+ FN QP++ V+VR +A RE L  AM+  N  KV  APV  VF AD EP+KR+PR+ +L  + G S   +  +   V LFSGEGV  + +R A+ +A SP QPAP      AW+FK T  AA   + A    G+AT PMEGFD  RVR ALDIPDRYG+P+++A GYP       A    KP   R  P EV FDG FG   EG+
Sbjct:   63 APTGFNTQPYACVVVRKQADREKLAEAMMASNVRKVKEAPVVVVFAADCEPTKRVPRLQKLAADNGASTDLVNNLPHVVRLFSGEGVAASGIRAAIATAVSPLQPAPSNVSTEAWAFKQTTFAAATLLYAAQEHGVATCPMEGFDQIRVRNALDIPDRYGIPVVIALGYPNP-----ATAPTKPSV-RLQPTEVFFDGKFGQSSEGI 263
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9349.17120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ3_ECTSI1.090e-9772.77Nitroreductase domain-containing protein n=2 Tax=E... [more]
A0A835Z3C4_9STRA8.150e-5950.49Putative nitroreductase family n=1 Tax=Tribonema m... [more]
A0A484DVA5_BRELC3.280e-5448.34Nitroreductase domain-containing protein n=1 Tax=B... [more]
A0A1V9ZJF0_9STRA6.800e-5348.08Nitroreductase family n=1 Tax=Achlya hypogyna TaxI... [more]
W2YM79_PHYPR8.780e-5348.80Nitroreductase domain-containing protein n=5 Tax=P... [more]
A0A6G0XIZ5_9STRA3.630e-5247.76Nitroreductase domain-containing protein n=1 Tax=A... [more]
D0NC21_PHYIT5.100e-5150.25Nitroreductase family, putative n=3 Tax=Phytophtho... [more]
H3GH55_PHYRM1.230e-5048.79Nitroreductase domain-containing protein n=2 Tax=P... [more]
A0A225VC66_9STRA2.780e-5048.54Nitroreductase n=1 Tax=Phytophthora megakarya TaxI... [more]
A0A3R7NF45_9STRA1.050e-4947.83Nitroreductase domain-containing protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9349contigH-paniculata_contig9349:2367..9669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score263.8
Seed ortholog evalue5.9e-68
Seed eggNOG ortholog2880.D8LMQ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1320
Cds size558
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.4260137-UTR-H-paniculata_contig9349:2366..24501622931162.4260137-UTR-H-paniculata_contig9349:2366..2450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9349 2367..2450 +
1691481618.5539055-UTR-H-paniculata_contig9349:2366..24501691481618.5539055-UTR-H-paniculata_contig9349:2366..2450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9349 2367..2450 +
1622931162.6353254-UTR-H-paniculata_contig9349:8991..96691622931162.6353254-UTR-H-paniculata_contig9349:8991..9669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9349 8992..9669 +
1691481618.624086-UTR-H-paniculata_contig9349:8991..96691691481618.624086-UTR-H-paniculata_contig9349:8991..9669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9349 8992..9669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931162.4484513-CDS-H-paniculata_contig9349:2450..25171622931162.4484513-CDS-H-paniculata_contig9349:2450..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 2451..2517 +
1691481618.56565-CDS-H-paniculata_contig9349:2450..25171691481618.56565-CDS-H-paniculata_contig9349:2450..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 2451..2517 +
1622931162.4718208-CDS-H-paniculata_contig9349:3660..37341622931162.4718208-CDS-H-paniculata_contig9349:3660..3734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 3661..3734 +
1691481618.5752995-CDS-H-paniculata_contig9349:3660..37341691481618.5752995-CDS-H-paniculata_contig9349:3660..3734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 3661..3734 +
1622931162.5374706-CDS-H-paniculata_contig9349:3984..40861622931162.5374706-CDS-H-paniculata_contig9349:3984..4086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 3985..4086 +
1691481618.586356-CDS-H-paniculata_contig9349:3984..40861691481618.586356-CDS-H-paniculata_contig9349:3984..4086Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 3985..4086 +
1622931162.5805242-CDS-H-paniculata_contig9349:4359..44781622931162.5805242-CDS-H-paniculata_contig9349:4359..4478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 4360..4478 +
1691481618.5959897-CDS-H-paniculata_contig9349:4359..44781691481618.5959897-CDS-H-paniculata_contig9349:4359..4478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 4360..4478 +
1622931162.6187606-CDS-H-paniculata_contig9349:8795..89911622931162.6187606-CDS-H-paniculata_contig9349:8795..8991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 8796..8991 +
1691481618.6064582-CDS-H-paniculata_contig9349:8795..89911691481618.6064582-CDS-H-paniculata_contig9349:8795..8991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9349 8796..8991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9349.17120.1prot_H-paniculata_contig9349.17120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9349 2451..8991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9349.17120.1

>prot_H-paniculata_contig9349.17120.1 ID=prot_H-paniculata_contig9349.17120.1|Name=mRNA_H-paniculata_contig9349.17120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MLGGNATKVLSAPVTAVFCADLEPSKRLPRMAQLQREAGMSEAQIVQMAA
AVNLFSGEGVMGNLVRTAVTSAASPFQPAPEVSPVVAWSFKNTALAAQMY
MLACTARGLATAPMEGFDARRVRAALDIPDRYGLPMMVATGYPASPPPPS
AGRDAKPKRWRYPPKEVVFDGSFGVGLEGVEPVVG*
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mRNA from alignment at H-paniculata_contig9349:2367..9669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9349.17120.1 ID=mRNA_H-paniculata_contig9349.17120.1|Name=mRNA_H-paniculata_contig9349.17120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7303bp|location=Sequence derived from alignment at H-paniculata_contig9349:2367..9669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGCTCCATCTTCTTTCAATGTTCAGCCATGGAGCGTAGTATTGGTGCG
AGATAAAGCTGGTAGAGAGGACCTAGGCACGGCAATGCTTGGAGGGAATG
CGACGAAGGTGCTGTCGGCGCCGGTTACAGCCGTCTTCTGCGCAGACTTG
GGTAAGTGGGGATACAACCGTTACAGAATCTATAATTAACAGCAAAATGT
AACTTTTTTGCTCATCATTTGGAGTTTAAACTCGTGAGACCAGGTCAAAC
TACTCACACTGACGAGGGCACGTTGACGTGTTGATACACTTCATGTCTTT
CCAGCGGCTTTTGACCTCGTTAGGAGGTGAACGCCAAAACTAGCTGCTTA
CCCCTGTACCACCGTGGCTAGTTGAGCAGCGACAAGAAAAAAAACTCCCG
TGCACGTCACGAGAGCGAACATTGTTTTTACTGTGTTGAAACGAAGGGAA
TTTATTGTAAGCTTTCTCAGTGAAAATTTGCACTCACTACTGACGTCTTA
CAACAGTGCCGACGCGTATTTTTACGGCAGAATATGGCGAAAGAAAGGAA
TGGGTAAGTCCACCTCAAGTCCCACGCAAGGTACAGTACACAATCCATAG
GATACGTGTACCAGTAGATCCACAAAGAGTCAGATCTATACCGCAATGAA
ACATTATTAGTGATAACTAGACCAACCATGACAATTAGCGTTGCTTGTCC
CCCAGCAACGACAGCTTATCCCTCTTGGGATATCTTCAGTCATGTGTTTC
GTGTCAAACTATCGCAGCGACAGCACGAGTGCAGCGCTGTCTTGAGACGT
GAGTATCACCACACCGCCAAGCACAATTGGTATAGCCTTCAATCTCACCC
AGAGGGCTTCCAATTATTTCTACACATGCAAGAACCGTTGTAATACGGTC
TGCTTGGCATGGAGAAAAGTCCGAGTTACTTTGTTGCTCTTTCGTCTATT
TTATACAGATGAGAAATCGTGCACTTGTTTCTTTTGTACGCACGCATTAG
TCAGTTGTGTATATTACATCGAATTTTACGGATTGATGTATTCTCGCGTT
AGATGTCCAGTGTCACACGAGGAGAGGCCAAGGAGCAAACGAGAAAGAAC
ACAGAACGCGCAAGAGGCTTGCGTACCGAAACGAAAATGGTTCCGATAAT
TCCCGCCGATAAACCCATTCATGCGTGATGAAAAATGAACTTATTCCAAA
CCGTACCGTCAGCACCATCAAGACGATGTACACATTCCTTTAAACACATG
GGTGATGTTTTTTCCCGTTGTCTTCTATTTTTTTCCACGAGCAGAACCTT
CTAAACGCCTTCCTCGAATGGCACAGCTGCAGCGCGAAGCAGGCATGTCA
GAGGCGCAGATAGTGCAGGTAAATCGGTACTTTCATATACCCTTGAGGTG
AGCGTATCCATTGTCGTCAAGAGTGTGTAGAGGTAGGTAACATACTGCTG
CGAAAGGTTCCGCCCCCCCCCCCCTCCCCCTGCCCTAATTAGGTCGCTCG
ATGTTTGTTAAATGACTGAGCACACCGCCGATTTTGTCCCGCCCCACTCC
ACTTGATCTGCGTTATCGGGATGGATGTTTCCGCTCTGCATGGTTTTTAC
TGTCGCTCTCCCTCGCAGATGGCAGCTGCGGTGAACTTGTTTTCAGGCGA
AGGCGTGATGGGTAACTTGGTTCGAACGGCCGTTACAAGTGCTGCCTCTC
CCTTTCAACCGGCGCCTGAGGTACGAACACACCACCACCAAACGACTATT
CAGGACTTGGCTGATTTTGGGCGTTAGCTTGTAACGAAATCAAGTTGGAC
GTTCAAAGTGGGAGTGATATCTCTATATGGGGGATCCTAATGTGAGTTTC
CGTTTTCACTGGTTTCATGTGCTTTCGAATTTGTGGGGAAAATTGAATTG
TTTGACGAAAGAAGGAACGAAAGAAATGAGGCAAACTGCTTAAAAAATGA
ACATAGGTCAATCGGATAGGACTTCATGTTTGTCAAACCCCAGGTGTCTC
CAGTGGTGGCGTGGTCCTTCAAGAATACAGCCTTGGCTGCGCAGATGTAC
ATGCTCGCGTGCACCGCGCGGGGGCTTGCAACGGCACCTATGGAGGGATT
TGATGCCCGAAGGTAAGATGCATACCGGCGGCAATGCCTCAGTCAGTCAG
ACCACGCCGACCCCACATGTACATCCTCGTAAAAATAGGCCTTCCGTTTG
GGTTACGCGACAACGAAGGTCACTATCTAGACGTGCGTACGAATGCTACT
TCTTGTCCATAACTTGTCTGACAGAATTCTGGTGTACTGACTTTGGACTT
CCAGCCCGGCAGTCATACCGTGGAAACTTCCTTTCTGCACTAGCCAGAGT
GACTTACCCAGTGTACGCTAATGTCACCTACCACACTGGAAGTATCCCAT
AAGCCATTCACACTGAAACCCGCAATACACTTACTCCTGCTTGAAGGTTT
TAATTCACCAAGAGCTAAACTCAACAAAAACGTACCAAAGCTCTAGAGCG
TCCGATAAAACAGTCTAATAAACTACGACCCATGCTCATCAAGATAATTT
TCCCAGCATGAAAGACATGCAGAATCCCTACGAAAACCGCCCATCACATG
TTTGCCCAACCGAAATTGACGATCACACATCGCGAAGAACCTCCAACCGA
TGTTTTCGCCGTGCAAGCAGTACAGCTCTCGTCCTCAGTATGATGAAACC
AACAACAACTCGAACCCGCTTAGTAGCCCTTTGAAAAAATCGAAGTTACA
TGCGGAAGACAAATCAGTTGCGCGCGTCCCCAAACAAAATGCGAATCACA
TCAGCTTCTCCATGTTATGCATCAAACTAGCAAAGGACGCTAATTCACCG
GTCCCCCCCGAAAAACGATCCAGTCGCCTCGCGAATCACCCTGCGAATAG
TAACGACTGCCAGCGCAGTTTTGGTTTTGGAAATCCCGCACGCAACATGA
AAATCGCCCAGTGTCCGCAGAAAATTCTTCAAAGGCAGTCCGACAACTTT
TCAAGAAGCAACACAACACGCGGACATTCACGGAATGTAACCCAATCAGC
AAAAGCACACATACCGTACCGGAACAAGTGATATAAAACTGGCCTTTGCC
CAGCAGTCAAGCGTCAAATGCGAAAAACAGAAAAAAAGTTAGTCGCAACG
TGTGTCCATGTTGGCGTCAGCCGCACGCACAAAAGAAGAACTGACTACCC
GCCCACAAAGCAAACTTGGTATGATTGAAAACCCGTCACCAAACAGGAGT
ACCAACGCACGCGCCACAAGCTGATCCGAACAAACCGTAAGCAAAAACGG
CCAATTCTCGTACAACCCAGCGACCGGAGGCGGTCCTGGACGGCTATCTC
CTAAGGCCTGAGGTTTTATGGAAACCGAAGGCTGGACTGAGTGGCCTATA
AATACGCGTTCTGCGTATAGGTCTAGAATCAGAACACGGTAAAAAGTGTT
GTGGGCTTAAGCGTGTTTCCCTCTCAATCTATCTGAAGAAATGAGTAAAA
TCACGACTTTCAGGGGATGAAAGAAAGATGATCCGAACCTGGAAAACGTA
GAGTGCTCGGTGACAATTTGTCGCCAAATAGCCAGCAACATAACTCAAAA
TGCCAATCCTCCAACGTCGACGACCATTGAGACAATCAATGACATCAACT
GGATCCTCGCCTAACCGAACAATACTATCTCCCGTCCCGTCGTTGCGTCA
AGAATGTAATCCAAGAGTTATCACATAGTTTACGGCAAGGAACACCATGA
CGCTCGGTGACAATTTGTCGCCAAATAGCCAGCAACATAACTCAAAATGC
CAATCCTCCAACGTCGACGACCATTGAGACAATCAATGACATCAACTGGA
TCCTCGCCTAACCGAACAATACTATCTCCCGTCCCGTCGTTGCGTCAAGA
ATGTAATCCAAGAGTTATCACATAGTTTACGGCAAGGAACACCATGACGA
TTCGCTGCCTTGCACCACGACAAAGGGTAGCATGTCAGCATGGCCGCAAT
CACTACATTACGTCCCCGGGTTCTGCTTTTCACCTATCATAACATGATCG
AACAAGTAATGGTCGACCAGCTACCCGAACAAGCTATCCTGAACCTTATG
GAACCAGTCGTCAGATGGCGCCCTTGAGTCCATCCTAGGCAGTTCGGCCA
TTTCAGTGGTGCAATGTTTTAAACCAAACTCGTAATCCATTTAGGCAAAC
TTGCGCAATCCGATGTGCAGTATGTTCCATGTTGCCTGCCGCCCACCAAA
CTGCCTGTACCTAATCGTCTCTTCCACGGAGAGCGCTACGAATTCTCTCA
TGCTGTCTACTGTGCGCTCTACATCACCTCCGTTTGAGAATCCCATCTCA
TGCTTATCTCCTGCGTGTGCCTTTATGGAAGTGCGCACATCCCTTGCCGT
TTGTTTGTCCACGCTTGTCAAACCCGGATGGCTTTCGTCCCGCTCGTGAC
CCATACCTTCTTCGCTTCTCCTTGATGCCTCACGGCGCTCGCATTGCTAT
CCTCCAACCTCTTCGCCAAGAATTTCTCACAATGATCGGGCTCTTTGATA
AACCGCTGTCTTCTCGTTGCCTCTGGGCCTTGTTTGTGCGTGCAACGCTG
CAACACTCAGTGTCACCGGACAATCCCGCTTCCAAACCGCGAAGTCATGA
AATTACAGAATTCGATCAAATTATTTTGACGGTGGACTTCCAGCCGGGCA
ATCATAGTCTCAGAGGCTTCTCTGTTGCACTGACGCGAATCAATCTACCA
AGCATGCGCTATTGTCACCTACCACGTACGCAAGTGCCGCAGCACGGCCC
AAAGCTCAATGATGGACTGAAGTATTACAAATCGCTTAGCGTCATTTCAG
TTACCCCAAAAATATATAACACATATACCCAATTCCGTTACAGAATACGC
AATGTTTTCTTTTTGAATATATGCTACGGTGGTATCTACGCTGCAGCACA
ATGACGAAATGACGAAAATGTAAGTCAATTTTTATATGAACGAAAAAGGT
CTGCATGCGACGGTATTTTGAGAGGCACTTGGTGCTACTTCGTGAAGTCC
TCATCAATTAATACGCACAAATGATGGTGATGTAGGTGATGCTTATTTCG
GAACAGTTTTCATACCCTGTCCGAGTGGTTTTTCCAACTTGTTGTGTGGG
CTAACACAGCAACAGAGGTGCTGGAGGTACACACTGCACCAGCAAGAAAG
ATAGTTATACAATCACAAGCCGATGACTCTGCGACCCAAAGCAGTAGCAT
TCTGAAACACACCAGGGGCAGTGCTACACCATGTGTGATCTGAACACGGG
CAGGGCAACACTTGTTTGTTCTCGAGAAAAAACAATGAAATGTGCCAATT
AGTTATCACAAAGACAATCTGAAATCCAGCACAGGGTGGTAACACAGGGA
GAAGACGGTGAGATGAATAGGATGTAGCCAGCAACTTGTCACGGCCTTGA
GTGATCCTGCGCCTCAAAGTGGCATCATTCCGCAATACACCAAGAACAGC
ACCACGTGTGACATGAGAAAAGGCAGGGCACCACCTCCAACAATGTTGTT
GTGTAGAAGACACGGGTTTGTTGCGTACCTGGGCGTTTAACTTTTAGAAT
TCATGAGGTTCTCGACTAATGTACTCAGTCCTCGAGCCCCATCTCCTCTT
TTGAGCAATTTCAATTTTTCAGTTGCTCCTTGGTCCGGAAAAAGCAGCAT
CAGAGACCTGCACACAATTTGTAGATCATGAGCTACGTTTCTTTTTAATT
CTAGTGTAAGCAAAGAAGGCGATTCCGAGGGTACTAATGAGTTGCACAGT
TGCACAGATATGTTGAAATATGTATGACCAGTAGCCTACGAAGTTTGACT
CTGTTTTAATCGTGTGTTTACACAATGTATATTGCTGTTACGAACTGCAA
AAGAGTGCTTAGTCTACATTTTAGCACAGCCAGTCGGTGTGAAAGCATTA
TTGTGACGTTTACAGAGTCGCCGCCACTGGCGTAGCCGTGGCCTATCTCT
ACTAGCACTCATGAAGCCTCCAGCCTTGTAATTTCATTTCACATGGACTC
GCCCGCCACCTCATGTTCCGCCCGTCCCGTTAAGGACGCGCTGTAAATGA
ATTGATAACTAAAGTATGCAATAAAGGAATGCCCCCCGTTAACCCTATAC
ATATCCTCGGCATTGAAAGGCATGAAAAAAGCAACAGTAAATATTATGGC
ACATCACAAAATGGGTTAACTCATTCCGGCGGGTTTGCAAGGTGGATGTA
TCTATTTTTTGTCATGTCCATTGCTAGGTCAGATACGTGTAGTTACGCCA
TATATCATAGATGCAATAATCCACGTACCCCCGCTTCCCGCACCGCCCCT
CCAGCGATACGTGGTCAATAGATTAACAACTAAGGCATATGCCTGCCCCA
CTCGGTCACTCCCGCCCTACACAAAGCAGAGTCAGAGCAGCGCTCGATAT
TCCTGACCGATATGGCCTCCCAATGATGGTCGCAACCGGATATCCCGCCT
CGCCGCCGCCACCGTCTGCCGGACGTGATGCAAAACCGAAGAGATGGCGC
TACCCTCCAAAAGAAGTTGTCTTCGATGGGTCCTTTGGCGTGGGGTTGGA
AGGGGTCGAACCTGTGGTCGGTTAACGCTTTCGTCGGCCGCGAAGGGACA
TCTGTGTCCAAACATGAGTCGGGCATGATTTTGTAATCGGTTGATCGTGC
ACGATTGATTGAATGTGAAGTGAAGATCCTCCAATCCTTCTTGATGAAAG
GGTAATTAGGTGTAGGTTTTGAAACTTGTTGTCGTCTCTTCGTTGACGTT
GTCGCCTTCCAGCTATTTTTTTCTGCCGAGTGATGCTTATTCCGCTTTTG
TTCGGATAACCATCCCTCATGGTTGTTAGCTAATGTACCAAGACTGTAGG
AAGTAATGTTTGATTCCGGGGTGCGCTAGAAGGCTTTTGCAAGGATAGTG
TGCGTAGTAGGGTAGTCAGTCGTAGTGACGTAAATCAATAGTACTTTAAT
GAGCCCATTCGTTCGTCACTTCACTGTCGCTTTGATTATCTTGTTTGCCT
TTGGCAGTAACTCGCTATGCCGTTAGTGATTTACGTGGACTTCTCTACGC
TTTCCGATTGTGCTTGCCCTGTTTTCACCGTCGATTCTAAATAAACGTCA
GGATTGGGGAGGGAGGTTGGTGGTCGGGAAAGGAGGCAACTGGGATATGG
GAATTAGCCCAAGATCCACGTAGAACAGAGTGTTCGTGAGATGGAGAATC
TATTTTCAAGAAGAAAACGGGGGATATTTTGAAACCGTCCTGCAGTCCAC
CGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9349:2367..9669+

>mRNA_H-paniculata_contig9349.17120.1 ID=mRNA_H-paniculata_contig9349.17120.1|Name=mRNA_H-paniculata_contig9349.17120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig9349:2367..9669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGGAGGGAATGCGACGAAGGTGCTGTCGGCGCCGGTTACAGCCGT
CTTCTGCGCAGACTTGGATGCTTGGAGGGAATGCGACGAAGGTGCTGTCG
GCGCCGGTTACAGCCGTCTTCTGCGCAGACTTGGAACCTTCTAAACGCCT
TCCTCGAATGGCACAGCTGCAGCGCGAAGCAGGCATGTCAGAGGCGCAGA
TAGTGCAGAACCTTCTAAACGCCTTCCTCGAATGGCACAGCTGCAGCGCG
AAGCAGGCATGTCAGAGGCGCAGATAGTGCAGATGGCAGCTGCGGTGAAC
TTGTTTTCAGGCGAAGGCGTGATGGGTAACTTGGTTCGAACGGCCGTTAC
AAGTGCTGCCTCTCCCTTTCAACCGGCGCCTGAGATGGCAGCTGCGGTGA
ACTTGTTTTCAGGCGAAGGCGTGATGGGTAACTTGGTTCGAACGGCCGTT
ACAAGTGCTGCCTCTCCCTTTCAACCGGCGCCTGAGGTGTCTCCAGTGGT
GGCGTGGTCCTTCAAGAATACAGCCTTGGCTGCGCAGATGTACATGCTCG
CGTGCACCGCGCGGGGGCTTGCAACGGCACCTATGGAGGGATTTGATGCC
CGAAGGTGTCTCCAGTGGTGGCGTGGTCCTTCAAGAATACAGCCTTGGCT
GCGCAGATGTACATGCTCGCGTGCACCGCGCGGGGGCTTGCAACGGCACC
TATGGAGGGATTTGATGCCCGAAGAGTCAGAGCAGCGCTCGATATTCCTG
ACCGATATGGCCTCCCAATGATGGTCGCAACCGGATATCCCGCCTCGCCG
CCGCCACCGTCTGCCGGACGTGATGCAAAACCGAAGAGATGGCGCTACCC
TCCAAAAGAAGTTGTCTTCGATGGGTCCTTTGGCGTGGGGTTGGAAGGGG
TCGAACCTGTGGTCGGTTAAAGTCAGAGCAGCGCTCGATATTCCTGACCG
ATATGGCCTCCCAATGATGGTCGCAACCGGATATCCCGCCTCGCCGCCGC
CACCGTCTGCCGGACGTGATGCAAAACCGAAGAGATGGCGCTACCCTCCA
AAAGAAGTTGTCTTCGATGGGTCCTTTGGCGTGGGGTTGGAAGGGGTCGA
ACCTGTGGTCGGTTAA
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