Homology
BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Match:
A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE)
HSP 1 Score: 99.4 bits (246), Expect = 2.770e-19
Identity = 113/375 (30.13%), Postives = 161/375 (42.93%), Query Frame = 2
Query: 2 QVMEQVLQGVRGMRQSMSTLQRTRTQVTFGCAMAASLIDTATAVQGVLAAISDGDTIWHRHNLLLPLS------KPPRDIQVRSRAAGTSGGTAVAAGEGWEWVSSASGKSVSP--------REARDRAVERLSRAVEVLILEYDKARKRIVFGLDEQGRTLGEQQG---ENGVGGAAKGGDGEETRDEETD-ISHLGLTFRSPSRSLSNVKSHGGVVEHGY-RDPEEKSIKDEI-------------PTHVMSMEERHRVGGQPEMARGAFFFSLQALCNMLIKTTSMR----RPAKISVAS-YVLPGLWTAVRPPPELWNMIMTARRFAGLNLFRVGEQREPESGEADVTTTPVPVATSAVGAASGKLHAPKR 1015
++MEQVLQGVRGM QSM + RTR QV+F + +SL D + AV L A S R + LLP S + I S + + + A RL AV ++ +Y +ARK +++GLD+ GR L E E GG + E E+ +S R+ S ++S +K+ G +E + DEI P HV+ M+ER ++G MARGAF FSL LC+ L K R RP++ + A+ +++ GLWTA+RPPP L + + AGL R R S V +A +GA SG + R
Sbjct: 37 ELMEQVLQGVRGMLQSMVDMHRTRAQVSFSRVVGSSLRDVSKAVDLTLEATS-------RRSALLPASILACCHRDALGIMTTSSVGNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQSSLLEATGRLEEAVSRMMKDYQRARKEVLYGLDDLGRPLEEVASLGREVDRGGRSPSIPREPVSLEDLQSLSKREKLPRTGSINISVLKNGLSTTAGGVPASSKEAQVSDEIAGRRKERDPLGGVPNHVLVMKERQKLGSSATMARGAFLFSLSGLCSALTKKRVSRAGGWRPSQSAEAARFIISGLWTAIRPPPGLLGALSST---AGLLAPRCCRPRGSSSSRGH--RRKVKLALKRLGARSGPVSPTSR 399
BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Match:
D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)
HSP 1 Score: 84.7 bits (208), Expect = 3.630e-14
Identity = 65/207 (31.40%), Postives = 94/207 (45.41%), Query Frame = 2
Query: 353 RLSRAVEVLILEYDKARKRIVFGLDEQGRTLGEQQGENGVGGAAKGGDGEETRDEET--DISHLGLTFRSP---SRSLSNVKSHGGVVEHGYRDPEEKSIKDE--------------IPTHVMSMEERHRVGGQPEMARGAFFFSLQALCNMLIK-----TTSMRRPAKISVASYVLPGLWTAVRPPPELWNMIMTARRFAGLNLFR 901
RL AV ++ +Y +ARK +++GLD+ GR L E+ +G + G RD + D+ L P S +LS +K+ G +++ E +P HV+ M+ER ++G MARGAF FSL LC+ L K T R A +V GLWTA+RPPP L + + F FR
Sbjct: 466 RLEEAVSRMMKDYQRARKEVLYGLDDLGRPL-EEVASSGREVDSGGRSPSLPRDPVSLEDLQSLSKRINLPRTGSINLSGLKNGLSTTAGGLPARSKEAEVSEGIGGRRREGDPLGGVPNHVLVMKERQKLGSAATMARGAFLFSLSGLCSALTKKRVNRTGGWRPSQSAEAARFVFSGLWTAIRPPPGLLGALSSTPGFLAARCFR 671
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9337.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.77e-19 / Id = 30.13 Expect = 3.63e-14 / Id = 31.40 Sequence A0A6H5JZ72_9PHAE D8LD61_ECTSI
Match Name E-value Identity Description
A0A6H5JZ72_9PHAE 2.770e-19 30.13 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more] D8LD61_ECTSI 3.630e-14 31.40 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 3 Model size 1062 Cds size 1053 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9337.17117.1
>prot_H-paniculata_contig9337.17117.1 ID=prot_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=351bp
MEQVLQGVRGMRQSMSTLQRTRTQVTFGCAMAASLIDTATAVQGVLAAIS back to top mRNA from alignment at H-paniculata_contig9337:4416..7538+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9337.17117.1 ID=mRNA_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3123bp|location=Sequence derived from alignment at H-paniculata_contig9337:4416..7538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)ACAGGTG ATGGAGCAAGTACTGCAGGGCGTTCGAGGCATGAGACAGAGCA
TGTCCACCTTGCAGCGCACGCGCACGCAGGTCACATTCGGCTGCGCGATG
GCCGCATCCCTCATAGACACCGCCACGGCCGTCCAAGGAGTTCTCGCCGC
AATCTCCGATGGCGACACTATTTGGCACCGCCACAATCTGCTCTTGCCAC
TATCCAAGCCCCCCCGAGATATACAAGTAAGAAGCAGGGCTGCTGGAACG
AGCGGGGGCACTGCTGTGGCGGCGGGTGAGGGATGGGAGTGGGTAAGCTC
GGCGTCTGGGAAGAGTGTGTCACCGCGCGAGGCTCGTGATAGGGCCGTTG
AAAGGCTTAGTAGAGCCGTTGAGGTGTTGATACTGGAGTACGATAAGGCC
AGGAAGAGGATTGTCTTCGGGCTGGATGAACAAGGCCGGACGCTTGGTGA
GCAACAGGGGGAAAATGGGGTCGGCGGTGCTGCTAAAGGTGGTGATGGGG
AGGAGACTCGTGATGAAGA GTGAGTGGAAGCATGTGTTAAACAGCAAATA
GGAGAGGATGCAATTGTTGAACGATTGATACAGCAAACCAAGGGGCCGTA
GGATGCCATCATTACGCGAAGCATAGAATACGTGTATACATAATCAGGTG
TATATCTATATCCACATCTATATATGCGTGCATGTATTGATTTTTATGCG
AGTTTCCACCTGCATGTGGATATCTGCACATTAACCGAAACTAACCGAAA
AGGGTACTGCAAAAAGCATAAAAAGTTCATCTGACACCAGGCAAAAGCGG
AGGAGACACGCGTGAAGGTTAGCATTGAAAGTTGTATGTAGCTGGTATAC
TGTAGACGATAATCTAATGACAATACTGCTATTAATATTGCTGCAACGAG
AGGAAGCAGGGTTTGTCACTGTATGTCGTGCTTCTCGGACAGCGTTTCTT
CTCTGTTTTGACGTGAGTGCGTCTCCAAGCCCGTGTTGCGAATTTGTGGT
CGGTGTGTGGTCGTACGACATCGACCAAGAATCAGGTGCGTAATGGGACT
GTATGAGGACTTATATTCTTTTGCGGTGTACCTGGAGTAGGTAGCACTCG
TCTTCGTCGATCCTTTGAACAAGTATGCGTCTGATCCTGATCGATCTCGG
CATGTACTGGAGTATGATCAGTAATTGCATGTACATTTTTATCGTGCTGT
TGCCTCACACGACAATATTCTACTCTCCAAGTTGGATCCAATATGAAAAC
AAGTACCCTTCGTGTGGGTCCCGCCAGCGTTTCATCCATTTTATTCACAG
ATCACCGTCTTTTTTGTAACCGTGCCTCCATTTTCCCATCGTTCCCATTG
TGCGATGTCAACGGTACATTGTTTTACATAACATCTGACTTGCCCGGCAC
AGAACCGACATTTCTCATCTCGGGCTAACATTCAGGAGCCCGTCAAGGAG
TCTTTCAAACGTGAAAAGTCACGGAGGCGTTGTGGAGCATGGGTACAGGG
ATCCCGAAGAAAAGAGCATCAAGGACGAAATTCCTACGCACGTCATGTCC
ATGGAAGAGAGACACCGGGTTGGCGGACAGCCTGAGATGGCTAGGGGAGC
GTTCTTTTTCAGCCTGCAGGCGTTGTGTAACATGCTTATCAAGACGACCT
CAATGCG GTGCGTCTCGTGGAGAAATGTGCAGAGGAGTGATGTTGTGGTG
CCAGTCTTTCAAGATTTCAGTATCACCCTTTGTATTTGTTTGATTGGTTT
TGCTCTGTTTTGTCCTGGCTTGCCAAGACTTGACACGCACGCTTTGTGAG
ATCATCACTAACATTGTGTGAAATGAAAATAGCTGTTTGATCGATCCCGT
CAAAATCTCGCCGTTGGGAAATGACCCCGCATCATTTGACCGCCTCTCAG
TTTGATCGCACGGCACGCGGCTCGGAAATTTCTCACAGAATGAGAACGGA
AGCTTGTTCTGTCGGGACTTGTTCCCGTGGTGTAGCGGTTTATGCCCGGG
CTTACTTGCAATTTTGGCGTCACGTATGGTATCTGAGGTTCGGACTAAAA
GTTCGAAGAGGGTATGCATATGTAGCTAGCTAGCCATCCGCACGTTGTGT
ATGCTGCATACGTCCGATGGCTTCGTGTGCGAAATGGCATGAGTTGCTCT
CTTAGCCGCGTGTTAATCAACGAAGGGAAAAATAATATACATGGGATTGA
AAATGAAAATTTGACCCTATGTTGCCTCTGTGGTTGGCCAGTGCTCATGC
GACTACCCTGGTCCTGCGCGTACACGGATAGTCGTACGAACACTGGCCAA
CTACAGAGCGTTGAAGCAGATTCGCATGCTTGTTATCATGGTTTCCTCAT
TCGCTTAAAATAACTGTATGTACTACACGGTACATCTTACAGCGGTTGAG
CACAGTGAATCAATCTACTCCGACAACTCATTCTGAGGCACTCCAACAAC
CTTAACGTTGGCGCTCAAACCGCGAGCAACATTCCCCAGCATAGTGTTTG
TTAAGTCTCTCAGCATCTTCCCCGCTTCATTATGCCAAGCTTATTCATAA
GTAAACACACCTCGCTGTGACGTTGGGCTCACATGACGTAAGAATATTCG
TGAATATTAAATTAGTATAAATGAAAAGACAAACCCGAAAAAACCCCAGC
ATACCGGGCTGCAATGTTTGACAACCTTGCTTCTTCCTCCCCCGCTCCCG
ACCCCTGAATATCATTAATCCCCGCTCCTCCCTATATAAGCTCCGTCATC
TTGAGGGTCCAACAACCAAGGCATGTAACGTAGGAATACCCCACCCCCTC
GCTGCTCCCTTCCCCCGCGAAACAACTTACTACGAAGACGGCCGGCCAAA
ATTTCAGTGGCGAGCTACGTTCTTCCCGGCTTGTGGACAGCAGTGCGTCC
TCCTCCGGAACTTTGGAACATGATAATGACTGCGAGACGATTTGCAGGGT
TAAACCTTTTCCGTGTGGGGGAACAGAGGGAACCAGAGAGTGGCGAAGCA
GACGTGACTACAACTCCGGTCCCCGTTGCGACTAGCGCTGTGGGCGCGGC
TTCTGGAAAACTACATGCGCCGAAGCGGTGTGCTAGGTGTTGGGGAGTGG
GCACCACATTCTGGGCGTTCAAG back to top Coding sequence (CDS) from alignment at H-paniculata_contig9337:4416..7538+
>mRNA_H-paniculata_contig9337.17117.1 ID=mRNA_H-paniculata_contig9337.17117.1|Name=mRNA_H-paniculata_contig9337.17117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2106bp|location=Sequence derived from alignment at H-paniculata_contig9337:4416..7538+ (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top