Homology
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match:
A0A6H5K2E2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2E2_9PHAE)
HSP 1 Score: 171 bits (432), Expect = 4.300e-52
Identity = 87/122 (71.31%), Postives = 106/122 (86.89%), Query Frame = 1
Query: 28 GPRLGKLQGLRRD-EDDDCCGKRRSPSKKEGIKLLPLILMFVMFGPVVLTGLIYVFEIVANSEFAVKIGLSDDPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKYVRVSSKQ 390
GPRLG LQGL+R+ +DDD K R P KKEGIK+LPLILMFVMFGPVVLTGLI+VF+ VANS++ +KIGL+DDPRTRLTKFY K+NPTKMRDVDKL++KY+GRY EMF++L+ KY R +K+
Sbjct: 5 GPRLGNLQGLKREGDDDDPQAKMRRP-KKEGIKILPLILMFVMFGPVVLTGLIFVFDYVANSDWGIKIGLADDPRTRLTKFYKKHNPTKMRDVDKLLKKYKGRYPEMFQRLDAKYNRRKTKE 125
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match:
A0A835ZDU7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU7_9STRA)
HSP 1 Score: 110 bits (276), Expect = 4.280e-28
Identity = 61/134 (45.52%), Postives = 87/134 (64.93%), Query Frame = 1
Query: 16 PVSGGPRLGKLQGLRRDEDDDCCGKRRSPSK--------KEGIKLLPLILMFVMFGPVVLTGLIYVFEIVANSEFAVKIGLSDDPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKYVRVSSKQK 393
PVSGGPRLGKL+GL + KR+ SK K G+ +P+ILMFV+FGP VL +Y+F+ V+ S++ + +GLS +LT FY ++NPTK+R+V L RKY+GR AE+ +L+DKY R+ +K
Sbjct: 44 PVSGGPRLGKLKGLGESK------KRKGGSKGVPAEAPAKGGLNWMPIILMFVVFGPAVLPVFVYLFDKVSTSDWGINMGLSRSLEAKLTDFYKQHNPTKLREVPSLARKYKGRDAEIMARLQDKYKRLEDLKK 171
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Match:
A0A448ZFC5_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFC5_9STRA)
HSP 1 Score: 58.5 bits (140), Expect = 2.920e-7
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 241 DPRTRLTKFYTKYNPTKMRDVDKLMRKYQGRYAEMFKKLEDKY 369
D RTRLTKFY KYNP+K+ VD ++KY+GR EMF+KLE KY
Sbjct: 668 DYRTRLTKFYEKYNPSKIDSVDANLKKYEGREEEMFRKLEAKY 710
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9322.17106.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.30e-52 / Id = 71.31 Expect = 4.28e-28 / Id = 45.52 Expect = 2.92e-7 / Id = 65.12 Sequence A0A6H5K2E2_9PHAE A0A835ZDU7_9STRA A0A448ZFC5_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 170.6 Seed ortholog evalue 5.1e-40 Seed eggNOG ortholog 2880.D8LIN0 Hectar predicted targeting category signal anchor EggNOG OGs 2D02J@1,2SCJ9@2759 Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-11_004490.1 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 3 Model size 417 Cds size 417 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9322.17106.1
>prot_H-paniculata_contig9322.17106.1 ID=prot_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MAINPPVSGGPRLGKLQGLRRDEDDDCCGKRRSPSKKEGIKLLPLILMFV back to top mRNA from alignment at H-paniculata_contig9322:348..4101-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9322.17106.1 ID=mRNA_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3754bp|location=Sequence derived from alignment at H-paniculata_contig9322:348..4101- (Halopteris paniculata Hal_grac_a_UBK monoicous)ATGGCGATCAATCCTCCCGTATCTGGAGGCCCTCGACTGGGCAAGCTTCA
AGGGTTGAGGCGAGATGAAGATGATGACTGCTGCGGAAAGCGACGCTCTC
CCTCGAAAAAAGAAGGGATCAAG GTGGGGGGGAAAAGCAGATGTTTATTG
CTTGTTGTAATTTACAGTCAAATTCAGATTTTCCGTCTGTAGTGACATTC
ACTCGTCAAACTGAAAGGCACATCATTCTCGACATAAAACGTCTACGTGC
GGACGAGCCTCACTCCAGATTCAGCCTGCGCGCTTAGTGGTGTAAGAAAT
TGATATAGTTTGATTTGCAGGTGTATGGAGACTCTTTATATACAGCAGTG
GATGGTGTGAGACTCTTGATATGGAGCAGTGGACAGAGTGAAACATCTTC
GCCTTTTCCTGTAGCGTAAGAACACTTCATCCTACAAGGCTATGTGCGCT
AGTGTTTGATTGGGCCTAGTGTCGTCCCACGATCCCCCGCACCAATTTAG
TGTGCTACATTTTGCCTTATACAAACACCAGATATGGAAGAAGAGTTTGG
TTCAGAACGGACAGTATTGACAGACAGTGCAGCCAAGTCCCTACATAATC
CGTAGCACCATATAGCCTCATGCTGGATGGCAACGTAGTTAACGTACCAA
GGTGTATGGGCAAGGTAGATCATCCCATGTGTTGTGATGCGCCTGAGTTG
TATGCATCGACTCTCACCTCTACTATATAACAGTCAGTATTGAGTAGACC
GTGTCACTGCCTCTCTGCGGTCTATGTATTGACTCATCGAATTACGAGGA
TACGGTGAGTGTGCCATAGTACAGCGGAGTAGTTACAACAGCGACGTGCT
CCTGAATGTGTGATCTTGATTACTTTGTCTCCTTTGCCCATGCGAGTGCC
ACGTGTGTGTGTATATATATATATATATATACACAAGGACCTACGCCCGA
ACGGGTAGCGTAGCTCGTGAACTGAGCATGACTGGAAGTCTAGTCAGAGG
TCTTTTAGTGGGTGCAACTCCCACACCTACTTGGTTCTACAGAACCGGGG
TGGTGCCTACCCCGCAGAGTAACAAATAACTGTGTTCTGTTAAAGGAAAT
GTAGAAATACTTCGGTAGAAACACTTGAGTATGGAAACATCGGATAAAGG
TTTTTACCTTAGCCTTCCGCAGGTTAAAACCCCCCCCCAAAATATATATT
TATATATATATATATGTTTCTGCCGACTGGTCATAATCTAGACTGGTAAA
TAAATGAATTGAAACAAGTCCCGTCACAACTTCAATTTTTATTGTCACCC
GACCTCTGATTTTGAGTATTCTAAATATCGTCTGTGCATGCTTGCGACAA
TGCCAGGAGGGATGTCGATACTACTTGCGCCTTGCGATAAATGCCTTGCG
GTATGTGTGCCTTGCGGTATGTGTGCATGTACTTGTATATTATACCTTTC
TGCTATATTATGCGCCCGCGCTTTGTTATTTTCTGTCTTACGGGCAACAG
AAGAGTGAAAATATCTAATTTGAGATTATGGTCGGTACATCGCACAACAA
GGACGCTAAGAACCGTACCGGACGAGATGCGCGTGCTGTAACGGTCGAAT
GTCTTACATCGCGCTCTCTCAGCGGCGTTATTCCACCCGCTGTTGAGTCG
CAAACAAGAGTCCGGGCACGTGAACGAGTGCCACCATTCTTCAGTCGGGT
AAAAGGCACATGTAGCAATGTCAATCAATTGTCTCCAAGTTTTGGATTGT
TTGCTTGAACATCATTCAGTCAACCCCCCGAGAGTTTAACCACGCGTAGA
CAAACCCCGGCATCCGAGCACTCACGGGATGGCGAAGAAACCAGGGACCC
CAATCGGTGACGCTAGGCGCCTTGGCGGGTAATGCAAAGCGACGCATCGG
GCTGAGGCGCGAAAATCCATCCGGAGACGCTTGACGCCAACGCCCCGATC
GGTCAGGCAAAACGCAGCGCAGGTGATGCAAGCGCTGCGTCGGTCAGGTT
GCCGTCGCCTGGGACGGTGGCGCTGCCCGCGGAGGCACGGCTGGGAGAGC
GAGTGCAATTCAAGGATTTGGGCAATGCAAATTTTGGCAGTGTAAAAATC
CGTCGTGCACCTCGCTCCGTGCCTCTGATTCATTCTCCCGGCGCGCCCAT
GCTGCCCACAATGACGAGGTCCATGCTGTCCGGCGCACAGTGCGCACGGG
GGAGCAGGATAGACCGACCGCTGACTGCATCATCTCGTACTCTATTGTTG
TTCTCTAGCTCGAAAGCGAGTTCCCCGTCGCGCCGGCCATGGGTTAATAT
TGAGCGACACCCATTAGATAGCAGCCACCGGCGAGCTTTAGATCAGTACG
TCTTCTCTTCTCGTGTTTCGGCGTCCTGTTTGCCGAGTGGTGGTCACGTC
AGCAGCACTCCCGCACCGTGCGGTGGAACCTGTATTCAGGGGGGGGGAAA
TGTAATTGTGTGCTTGGTAAATATGCACTAAGGCTCTACTAGTTCAAGGG
TCTCAACAGACAAGTTACCCAGGCCTCCATACGAATTGCCATTTGTTGAT
CGATGACTTGTTTGGTGGCATTTGTTGTGGCGATTTGGCGGGAACAAGAA
GGAAAATGACCTGATTATTGCCGTATTACTGTTCGACACGTGCTTCCTTT
CGCCCTCTCTGGCGCACTGAATGTGTTTGTATATACCACTCAACGATAAA
TGGAACACTACGATACCGTAAAAGTAATTATACAGTAGGACTTTACGCAG
CATTGAAAGCCAAACTTGATAAGTGTTCCTTTTCGGCCGGTGAATCAAAT
ATTAAATATTTCACACACGGCGTTTTTGCCTGTCCTCATCGTACGATACC
TGTTCTGGATAATATTCCGCCGCAGCTATTGCCGCTGATTCTGATGTTTG
TCATGTTCGGACCGGTGGTGCTGACGGGTCTCATCTACGTCTTCGAGATC
GTGGCCAATAGCGAGTTCGCCGTGAAGATAGGCTTGTCCGATGACCCCCG
TACGCGATTGACCAAGTTCTACACCAAGTACAATCCGACCAAGATGCGCG
AT GTGAGCTAGTACAGTTACACTTGTAGCTTGAGAGCTAGCTCATATTTA
TAGGGGTCGGTGTTCAACTATTTTTTGCCTCTCGGAAACGTTTTTTGGAA
GGGAGGGGGGCGTTTCATACAATTAGCTGGTTGACAAGGGTATGATGCGA
TGTATGATACAGTACGATGACGATATGCTCGTTGAATGTGGATAATACGT
TAAGGCAGAGCGCATCTGTAGCAGTAGTTAGGTGACTGTTTTTTAAATGT
ATTATTTTTAAGCTGTTTGGAATTGTCCTTTGCTTTGTTCTTTGTCGAGT
AGGTCGTTGCGGTGGTTTGTGGTATTAGTGACGGCGTTTTCGTCGAGGAT
ATGTCCAGAGTAATTTGATTTTCTTTGAGTATAGGAGTGGGGTTTCAAGG
CTGGTGAGAAATAAGGACTTGATAGATTTTACCCTGCTGGATGAAAGTAT
TCAAGTATTGACAAGACCAAGCTATTTCAAGGTTGAAAATGAAAAGACTG
TTATTTTCAAGGATTATTGTCGAAGTTTAAAATAACGGTAACGATATTTA
CCGATTAATATATATGTTTCCCGGCCAAAAATGACAGGTGGACAAGCTAA
TGAGGAAATACCAGGGCCGGTACGCGGAGATGTTCAAGAAGCTTGAGGAT
AAGTATGTACGAGTCAGCTCAAAGCAAAAGGTGAGATTTTGGGAAAATCC
TTGA back to top Coding sequence (CDS) from alignment at H-paniculata_contig9322:348..4101-
>mRNA_H-paniculata_contig9322.17106.1 ID=mRNA_H-paniculata_contig9322.17106.1|Name=mRNA_H-paniculata_contig9322.17106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig9322:348..4101- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top