mRNA_H-paniculata_contig932.17101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A6H5KJ22_9PHAE (BED-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ22_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.460e-57 Identity = 120/241 (49.79%), Postives = 130/241 (53.94%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVAEANTDEVTPVTKQETHPDV-----LAPGQPAGVPGQPVLPQFHPQMPGMYGQPMXXXXXXXXXXXXXXXXXXXXXXXFNPMQNG------------VPQMQHGAQRMPPHMFGGPPGSNGQFQGMYGAPGGPMPG 672 MGKKKKQ KDE EAWCYYCDRVFEHEEVLI HQK KH C C KKLSTAGGLVVH QVH+ETI+ VPNAKEGR+SVD EIYG+NGIP EA+AERAAKKAR+A N P+ PGQ GQ + PQF+ QPM F+P G P HG MPPHM GGP G NGQ G GPM G Sbjct: 1 MGKKKKQKVAKDETEAWCYYCDRVFEHEEVLILHQKTKHLSCMFCKKKLSTAGGLVVHAQQVHRETISEVPNAKEGRKSVDLEIYGINGIPAEAWAERAAKKARIAGTNGXXXXXXXXXXXXPETPKVETATPGQQPAXXGQGMPPQFNGH------QPMPGMMFPGGAPGPGMGFHPMGQPGFHPGMMGPXXXXXXXXXXXXPPPMHGGPNMPPHMLGGPRGPNGQMLG------GPMQG 229
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A835ZE93_9STRA (BED-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE93_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.360e-42 Identity = 76/106 (71.70%), Postives = 90/106 (84.91%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVA 318 MGKKKKQ +++++ WC+YCDRVF+HEEVLIQHQKAKHFKC C+KKL+TAGGLVVH QVHKET+T V NAKEGRES +YEI+G+ GIP EA AERAA+KA A Sbjct: 1 MGKKKKQKVEEEKEQPWCFYCDRVFDHEEVLIQHQKAKHFKCLVCNKKLTTAGGLVVHCQQVHKETVTQVQNAKEGRESAEYEIFGMEGIPAEAIAERAARKAAEA 106
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A7S3YKR3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YKR3_HETAK) HSP 1 Score: 141 bits (356), Expect = 6.680e-38 Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAK 303 MGKKKK+ AV++E++ WC+YC+R+FE E+VLIQHQK+KHFKC C+KKLSTAGG+VVH QVHKETI V NA + R++ DYEIYG+ G+P+EA E AK Sbjct: 1 MGKKKKKTAVREEEKPWCFYCERIFEDEKVLIQHQKSKHFKCHVCNKKLSTAGGMVVHCLQVHKETIKNVHNAIKERDTTDYEIYGMEGVPQEAVDEHRAK 101
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A834FYY0_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834FYY0_RHOSS) HSP 1 Score: 135 bits (340), Expect = 7.750e-36 Identity = 63/96 (65.62%), Postives = 75/96 (78.12%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFA 288 MGKKKK+ A+K E WCYYCDR F+ E++L+QHQKAKHFKC C KKLSTAGG+V+H QVHKE++ VPNAK GRES D EIYG+ GIP + A Sbjct: 1 MGKKKKRAALK---EVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVPKVPNAKPGRESTDIEIYGMQGIPPDVLA 93
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A3Q7FHP4_SOLLC (BED-type domain-containing protein n=5 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7FHP4_SOLLC) HSP 1 Score: 138 bits (348), Expect = 4.230e-34 Identity = 76/151 (50.33%), Postives = 96/151 (63.58%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVAEANTDEVTPVTKQETH---PDVLAPGQPAGVPGQPVLPQFHPQMP 444 MGKKKK+ + K WCYYCDR F+ E++L+QHQKAKHFKC C +KLSTA G+ +H QVHKET+T VPNAKEGRES D EIYG+ GIP +A A ++ A A T +V ++ Q P LA G P V P ++P +P Sbjct: 1 MGKKKKRASDK----VWCYYCDREFDDEKILVQHQKAKHFKCNHCHRKLSTASGMAIHVLQVHKETVTKVPNAKEGRESTDIEIYGMEGIPPDALAAHYGEEEDEAVAKTAKVDILSSQYVGGVLPGSLAAGYPPRATFGTVPPLYNPAVP 147
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A1Q3BMZ7_CEPFO (BED-type domain-containing protein (Fragment) n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BMZ7_CEPFO) HSP 1 Score: 131 bits (329), Expect = 9.110e-34 Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFA 288 MGKKKK+ K WCYYCDR F+ E++L+QHQKAKHFKC C KKLSTAGG+ +H QVHKE++T VPNAK GRES D EIYG+ GIP + A Sbjct: 1 MGKKKKRVPSK----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKSGRESTDIEIYGMQGIPPDVLA 92
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A4D9BUW6_SALSN (BED-type domain-containing protein n=5 Tax=Salvia TaxID=21880 RepID=A0A4D9BUW6_SALSN) HSP 1 Score: 137 bits (346), Expect = 9.410e-34 Identity = 73/153 (47.71%), Postives = 98/153 (64.05%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVAEANTDEVT-PVTKQETHPDVLAPGQPAGVPGQPVLPQFHPQMPGMYG 456 MGKKKK+ AV + WCYYCDR FE E++L+QHQKAKHFKC C KKLSTAGG+ +H QVHKE +T VPNAK GRES + EIYG+ GIP + A ++ + ++ P++ + V+ G P QP+ P ++P++PG G Sbjct: 1 MGKKKKRGAVD---KVWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKEQVTKVPNAKPGRESTEIEIYGMQGIPADVLASHYGEEDDENPSKAAKIDLPIS--QIGGGVIPRSLGVGYPPQPLPPNYNPRIPGPPG 148
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: T1E1I5_SILLA (C2H2-type zinc finger protein (Fragment) n=1 Tax=Silene latifolia TaxID=37657 RepID=T1E1I5_SILLA) HSP 1 Score: 129 bits (324), Expect = 1.330e-33 Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFA 288 MG+KKK+ K +CYYCDR F+ E++L+QHQKAKHFKC C+KKLSTAGG+V+H QVHKE++T VPNAKEGRES + EIYG+ GIP + A Sbjct: 1 MGRKKKRQNDK----VFCYYCDREFDDEKILVQHQKAKHFKCHACNKKLSTAGGMVIHVLQVHKESVTKVPNAKEGRESTEIEIYGMQGIPADVLA 92
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: A0A1S4C9X3_TOBAC (protein SUPPRESSOR OF FRI 4-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4C9X3_TOBAC) HSP 1 Score: 135 bits (341), Expect = 1.350e-33 Identity = 72/148 (48.65%), Postives = 94/148 (63.51%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVAEANTDEVTPVTKQETHPDVLAPGQPAGVPGQPVLPQFHPQMP 444 MGKKKK+ + K WCYYCDR F+ E++L+QHQKAKHFKC C KKLSTAGG+ +H QVHKET++ VPNAK GRES D E+YG+ GIP + A ++ A A T +V + Q + PG P P + P ++P +P Sbjct: 1 MGKKKKRASDK----VWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKETVSKVPNAKAGRESTDIEVYGMQGIPPDVLAAHYGEEDDEAPAKTAKVDIPSSQYVGGAI--PGYPPRAPFGAMPPLYNPAVP 142
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Match: D7T9P9_VITVI (BED-type domain-containing protein n=5 Tax=Vitis TaxID=3603 RepID=D7T9P9_VITVI) HSP 1 Score: 137 bits (345), Expect = 1.410e-33 Identity = 76/142 (53.52%), Postives = 89/142 (62.68%), Query Frame = 1 Query: 1 MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSTAGGLVVHNSQVHKETITVVPNAKEGRESVDYEIYGVNGIPEEAFAERAAKKARVAEANTDEVTPVTKQETHPDVLAPGQPAGVPGQPVLPQ 426 MGKKKK+ A K WCYYCDR FE E++L+QHQKAKHFKC C KKLSTAGG+V+H QVHKET++ VPNAK GRES + EIYG+ GIP E A A E + D + + K E L G G G V PQ Sbjct: 1 MGKKKKRVAAK----VWCYYCDREFEDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKETVSKVPNAKPGRESTEIEIYGMEGIPHEILA------AHYGEEDEDVPSKLAKVEIPSSQLGGGAVPGTLGIGVPPQ 132 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig932.17101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig932.17101.1 >prot_H-paniculata_contig932.17101.1 ID=prot_H-paniculata_contig932.17101.1|Name=mRNA_H-paniculata_contig932.17101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp MGKKKKQNAVKDEKEAWCYYCDRVFEHEEVLIQHQKAKHFKCPTCSKKLSback to top mRNA from alignment at H-paniculata_contig932:11108..14412- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig932.17101.1 ID=mRNA_H-paniculata_contig932.17101.1|Name=mRNA_H-paniculata_contig932.17101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3305bp|location=Sequence derived from alignment at H-paniculata_contig932:11108..14412- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig932:11108..14412- >mRNA_H-paniculata_contig932.17101.1 ID=mRNA_H-paniculata_contig932.17101.1|Name=mRNA_H-paniculata_contig932.17101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig932:11108..14412- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |