mRNA_H-paniculata_contig9315.17098.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9315.17098.1
Unique NamemRNA_H-paniculata_contig9315.17098.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9315.17098.1 vs. uniprot
Match: D8LRP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP3_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.430e-33
Identity = 121/331 (36.56%), Postives = 156/331 (47.13%), Query Frame = 3 
Query:  390 IPLDVLAGHSSSEVRLVSIKGVVFDVSRDEAFQSQDGATGTGTGGSLAHLAGHDASRYLATFHINDVKTREAATSATVDAVDGSRQKGVNCGGIGGSGFDVGLEGLSYEEHWRLESHFVRMVEMFRAVAVLEDDDHTRIFGIPFGGAGGIRSHLAQLDQQYDTAVHSSGGSNNSQASSNISPTPSPRPSLPSLPNTNRAVELHSLVEGVDAEAIKRLLDGMPSE--GKAVVGAVLATRPSSVSSGAVEEGDYCSQAESKKPL-----VDAKCPRTGMTPLLKAVEGASEGVVRVLLGAGANVRCQAALYDGDDAMRLAERLGDREEIVEML 1361
            +PL VLAGH +    LVS+KG+VFDVS DEA+  +         G+LA  AGHDASR                    + A  GSR +G    G GG   D GLEGL YEEH RLE++FV +    RAVAVL D+D+  IFG P   +G      A        A+++   +NN +A                         LH+ VE  DAEA++ +L     +  G+ V  A           G   +GD   Q E  +P      VD+ CPRTGM+PLLKAVEG S                +AALYDGD A+ LA RL   + I+EM+
Sbjct:    1 MPLAVLAGHPT----LVSVKGIVFDVSDDEAYNHE---------GALAGCAGHDASR-------------------VIGASAGSR-RGY---GDGGGKLDAGLEGLRYEEHQRLEAYFVELARSRRAVAVLTDEDYISIFGTPLVASGDTGYTPAAATTASALAINTQ--TNNVKA---------------------LVAVLHASVEQGDAEAVRNVLSSRYQQPPGEEVEDA-----------GGDADGDSA-QIEETQPKSLLVPVDSACPRTGMSPLLKAVEGGS---------------AKAALYDGDTALDLARRLSCSDTIIEMI 245
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BLAST of mRNA_H-paniculata_contig9315.17098.1 vs. uniprot
Match: A0A024G7A2_9STRA (Ag1487 protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7A2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.850e-5
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 3 
Query: 1107 VSSGAVEEGDYCSQAESKKPLVDAKCPRTGMTPLLKAVEGASEGVVRVLLGAGANVRCQAALYDGDDAMRLAERLGDREEIVEMLRPHYAS 1379
            VS G V++      A    P ++  CPR+GMT L +AVE   EG+VR+LL AGA+V   A+LY+    + LA+R    + + E+L  H ++
Sbjct:  331 VSEGNVDKLKRVLDAVKGSPTLNEPCPRSGMTLLHRAVESDQEGIVRLLLEAGADVNATASLYEDATPLDLAKRFAS-QHVQELLLLHQST 420
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9315.17098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP3_ECTSI2.430e-3336.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024G7A2_9STRA2.850e-538.46Ag1487 protein n=1 Tax=Albugo candida TaxID=65357 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9315contigH-paniculata_contig9315:684..4031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-12_000540.1
Exons3
Model size1860
Cds size1248
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9315.17098.1prot_H-paniculata_contig9315.17098.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9315 1162..3897 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.4390967-UTR-H-paniculata_contig9315:683..11611622931159.4390967-UTR-H-paniculata_contig9315:683..1161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9315 684..1161 -
1691481617.2219863-UTR-H-paniculata_contig9315:683..11611691481617.2219863-UTR-H-paniculata_contig9315:683..1161Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9315 684..1161 -
1622931159.5101175-UTR-H-paniculata_contig9315:3897..40311622931159.5101175-UTR-H-paniculata_contig9315:3897..4031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9315 3898..4031 -
1691481617.2688694-UTR-H-paniculata_contig9315:3897..40311691481617.2688694-UTR-H-paniculata_contig9315:3897..4031Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9315 3898..4031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.4608045-CDS-H-paniculata_contig9315:1161..12601622931159.4608045-CDS-H-paniculata_contig9315:1161..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 1162..1260 -
1691481617.2335327-CDS-H-paniculata_contig9315:1161..12601691481617.2335327-CDS-H-paniculata_contig9315:1161..1260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 1162..1260 -
1622931159.4764776-CDS-H-paniculata_contig9315:2081..25621622931159.4764776-CDS-H-paniculata_contig9315:2081..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 2082..2562 -
1691481617.243179-CDS-H-paniculata_contig9315:2081..25621691481617.243179-CDS-H-paniculata_contig9315:2081..2562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 2082..2562 -
1622931159.491679-CDS-H-paniculata_contig9315:3229..38971622931159.491679-CDS-H-paniculata_contig9315:3229..3897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 3230..3897 -
1691481617.252837-CDS-H-paniculata_contig9315:3229..38971691481617.252837-CDS-H-paniculata_contig9315:3229..3897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9315 3230..3897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9315.17098.1

>prot_H-paniculata_contig9315.17098.1 ID=prot_H-paniculata_contig9315.17098.1|Name=mRNA_H-paniculata_contig9315.17098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=416bp
MSGKALCPFASSFQSSSSPPSENRGGELLQNRCPFGFGSSATPTSSTAGN
RDNSATLTCPLGFGSGNRSSRNKSLSLLAFDRLPRIPLDVLAGHSSSEVR
LVSIKGVVFDVSRDEAFQSQDGATGTGTGGSLAHLAGHDASRYLATFHIN
DVKTREAATSATVDAVDGSRQKGVNCGGIGGSGFDVGLEGLSYEEHWRLE
SHFVRMVEMFRAVAVLEDDDHTRIFGIPFGGAGGIRSHLAQLDQQYDTAV
HSSGGSNNSQASSNISPTPSPRPSLPSLPNTNRAVELHSLVEGVDAEAIK
RLLDGMPSEGKAVVGAVLATRPSSVSSGAVEEGDYCSQAESKKPLVDAKC
PRTGMTPLLKAVEGASEGVVRVLLGAGANVRCQAALYDGDDAMRLAERLG
DREEIVEMLRPHYAS*
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mRNA from alignment at H-paniculata_contig9315:684..4031-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9315.17098.1 ID=mRNA_H-paniculata_contig9315.17098.1|Name=mRNA_H-paniculata_contig9315.17098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3348bp|location=Sequence derived from alignment at H-paniculata_contig9315:684..4031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGGTGAAACGACCTTCCGACCCTGTTACCGACAGGTCAGTACATGAG
ACCACTGTACATGAACGTCAGGATCAGACGAGACTATCATAGCTTCGGTA
TATCTGGAAATCAAAAGCAAGAGAGCAAGGAAACATGAGTGGTAAGGCAT
TGTGTCCCTTCGCATCATCATTTCAATCATCAAGCTCGCCCCCAAGCGAA
AACCGTGGTGGTGAGCTTTTGCAAAACAGGTGTCCCTTCGGCTTTGGATC
ATCAGCAACACCGACGTCCTCAACAGCCGGGAATAGAGACAATAGTGCTA
CGCTAACATGTCCCCTCGGCTTCGGTAGCGGCAACCGAAGCAGCCGCAAC
AAATCATTATCGCTACTTGCTTTCGATCGGCTCCCGCGGATACCTCTTGA
CGTGTTGGCTGGGCACTCGAGCAGTGAGGTGCGTCTCGTTTCCATCAAAG
GCGTGGTTTTTGACGTATCACGCGACGAGGCCTTTCAGTCACAAGATGGT
GCTACAGGCACCGGCACCGGCGGGTCGCTGGCGCACCTGGCAGGACACGA
TGCGAGTCGTTATTTGGCTACCTTCCATATAAACGATGTGAAAACCCGCG
AGGCCGCTACTAGTGCTACTGTCGATGCTGTAGATGGGAGCAGGCAAAAG
GGGGTGAATTGTGGAGGTATAGGTGGTAGTGGATTTGATGTGGGGTTAGA
GGGGCTTTCTTACGAGGAGCACTGGAGGCTGGAATCGCACTTCGTGCGGA
TGGTGGAAATGTTTAGGGCCGTAGCCGTGCTGGAAGACGATGATCACACC
AGGTGCCAAAGCGCGTGGATGAACTGTTGCAGAAAGAGTGTGTTGTGTAG
TTTTCGTCTGTTGTTGTCATCATGATGTGCCTGATGCCTGACTCTTGGCT
GGCCAAAGCCACATCAAGTTACGGCGGCGGTTTCACGTCGGATTTGATCC
AGGCGTTACCCGTCATATCTTCTGTTTTCGTGCAAGTCTCTCCACTATCC
CTGCTGCACAGACAACGCACATATTTCACAGTATTTCCCATCATCCAGGA
CCACGACCAGAGTCGCCGTCATTCAAACATGCCGTCTCCGTCTGGTGTAT
TTTCCTTTTCTTGGGTTTGTTCGGTTGTCCCGAAAAGAAAACGGATTTGA
TCAAACCTTCTACGAGTATCAAGAATAGCTTGAAACGCCTTTCCTTTTCC
TTCCGCGAAAGTTCTGGACAAGTAAAAAGCTGCCACAGGTTGCGTTGTTG
CCCCCACTTAGTACGACTGTAGTTCAACATCGTGAATGACAAAGTACCGC
TTGTACACCGACAACCTCCGTCTATTATTTTTGGTCATCACAGCCTTGAT
TTGGTGCTTCGCTGCGTTTGTTGGACTAAACGCTGGCTTGCACTCTGAGT
ACACGCATAAAACGTTTTTTTCCGCGACCGGTTTGCCGTTCGTTTTGGCT
GCGTCTTGCTCAAAAACAGGATCTTCGGCATACCGTTTGGCGGCGCGGGA
GGGATAAGGTCGCACCTAGCACAGCTGGATCAACAGTACGATACAGCAGT
ACACAGCAGTGGCGGCAGCAACAACAGCCAGGCCTCGTCGAACATCTCTC
CAACACCGTCACCACGACCATCGCTACCGTCGTTACCAAATACCAACCGA
GCGGTCGAACTACATTCCTTAGTCGAGGGCGTTGATGCAGAAGCAATAAA
ACGCCTCCTGGACGGTATGCCCAGCGAGGGGAAAGCAGTCGTCGGCGCCG
TGTTGGCGACGCGTCCTTCTTCAGTCAGTAGTGGTGCCGTCGAGGAGGGC
GACTACTGCTCCCAGGCAGAAAGCAAAAAGCCGCTTGTCGACGCGAAGTG
TCCTCGAACAGGGATGACACCGTTGCTTAAAGCAGTGGAAGGCGCATCCG
AGGGCGTCGTGCGAGTGTTATTGGGTGCCGGGGCAAACGTGCGATGTCAG
GTGCGGCGTGCATGTGGCATTCCGTTTGTGGAGGATTGGGGGTGTGAGGT
GTGAGGGAGGCGCCAGCTTCAACACGGTGAAGATTGACGACCTACATAGT
CAGAAGAGACTGAGACAAACCGGCAGTACAGTAGCCATGAAAAATAAACG
CGTAGCCGTTTTTCCACAATGACTCTGCACACATAAGAGCTCAACTGCAA
TCCAACTAATCAAGAGTGGTGTCATGTCTTGCATGCCTTGGCTGCTGCTA
GATTTTTGTCCGCTTCCGCTCGTGGGGCGGGGGCGGGATGTGGGGGGAGG
GGGGGAGCATAGAAGTTGTCGATTATGTTGATCGGATTTTTCGAATGCGT
TGCGTGTGGGAGGTCGTAACCGGCAGCGTATTGTGTGGGTTCGTTGTGCT
ATACTGTGCATTGTATCACAGAATTGCTGTCTGTTTTGTGGCGTTCTGTG
GCAAGGTAAGTTTTGTATATTCTTTTATACTATGCGGGAAAAGACGCCAT
GCAGTGACTTTGCAGTCGTTGAGCCGATGGCAGGCCTAGAGTGGCTCTTT
CCTGGGAAACTTATTTCGTCCACCAATGCTAACTCGAACCCTTGGACTGT
GCATTCGTTTTTTTGCCTGTAGAAGAGACTAATTTTATGCAAACTTTGCA
CAACGCTAGAATATTACCCCATGGCCTTATATGAGGAGCGCAAGCACCCC
ATGATCCAGTATATTAGATCATGCAACGTTACTACAGTACACCGTCTTGC
TCTCTTTTGTGAGATTTATACTGGGTTCAATTCTTATTCTGTCTGCTTCG
CGGTGTCTGATGAAACTGCAGGCAGCACTTTACGACGGCGACGACGCGAT
GAGGCTTGCTGAACGGCTCGGTGATCGGGAGGAAATAGTGGAGATGTTGC
GTCCTCACTACGCGTCGTAAACTGCCATTTATTGCCACTCTTTCGCTTTT
AATATATCACGTGTACACATCACGTAGGCGTTTTTTCCGGGGCGGACCCG
ACATGTGTGGGTGATGATAACAGCTGCTCGGCATACCACCTCCTGCTTGG
TGAATTGGAAGCTTCAGTCTCTTAACACCTCTACCCCTGAGAAGAGGAAA
ATACTCTGACCGTCCTATGGGCGAAGATGGTTGAACGACAGAGCAGAGCC
TATTTGCTTGGTGCGGAATAGAGCACTTAGTCTGCAGTCTTTGTGCGAAG
GTAGTACAGCTGACAGAGTTGCAATGCACTGGTTTGAGCGGTGGAACAGA
GGAGCTCGTATAGATAGTGACAGGCTGCCGTGCAGGCAACTGTTGTCTGT
GGCGATAGCGTAGACTACACATGACAGACAGATACATAACAAGTACAACA
GAGAGAAGCACCCGGCCGATTGAAGTCAAGAATCAAGCTTGTTTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9315:684..4031-

>mRNA_H-paniculata_contig9315.17098.1 ID=mRNA_H-paniculata_contig9315.17098.1|Name=mRNA_H-paniculata_contig9315.17098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig9315:684..4031- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGTAAGGCATTGTGTCCCTTCGCATCATCATTTCAATCATCAAG
CTCGCCCCCAAGCGAAAACCGTGGTGGTGAGCTTTTGCAAAACAGGTGTC
CCTTCGGCTTTGGATCATCAGCAACACCGACGTCCTCAACAGCCGGGAAT
AGAGACAATAGTGCTACGCTAACATGTCCCCTCGGCTTCGGTAGCGGCAA
CCGAAGCAGCCGCAACAAATCATTATCGCTACTTGCTTTCGATCGGCTCC
CGCGGATACCTCTTGACGTGTTGGCTGGGCACTCGAGCAGTGAGGTGCGT
CTCGTTTCCATCAAAGGCGTGGTTTTTGACGTATCACGCGACGAGGCCTT
TCAGTCACAAGATGGTGCTACAGGCACCGGCACCGGCGGGTCGCTGGCGC
ACCTGGCAGGACACGATGCGAGTCGTTATTTGGCTACCTTCCATATAAAC
GATGTGAAAACCCGCGAGGCCGCTACTAGTGCTACTGTCGATGCTGTAGA
TGGGAGCAGGCAAAAGGGGGTGAATTGTGGAGGTATAGGTGGTAGTGGAT
TTGATGTGGGGTTAGAGGGGCTTTCTTACGAGGAGCACTGGAGGCTGGAA
TCGCACTTCGTGCGGATGGTGGAAATGTTTAGGGCCGTAGCCGTGCTGGA
AGACGATGATCACACCAGATGAGTGGTAAGGCATTGTGTCCCTTCGCATC
ATCATTTCAATCATCAAGCTCGCCCCCAAGCGAAAACCGTGGTGGTGAGC
TTTTGCAAAACAGGTGTCCCTTCGGCTTTGGATCATCAGCAACACCGACG
TCCTCAACAGCCGGGAATAGAGACAATAGTGCTACGCTAACATGTCCCCT
CGGCTTCGGTAGCGGCAACCGAAGCAGCCGCAACAAATCATTATCGCTAC
TTGCTTTCGATCGGCTCCCGCGGATACCTCTTGACGTGTTGGCTGGGCAC
TCGAGCAGTGAGGTGCGTCTCGTTTCCATCAAAGGCGTGGTTTTTGACGT
ATCACGCGACGAGGCCTTTCAGTCACAAGATGGTGCTACAGGCACCGGCA
CCGGCGGGTCGCTGGCGCACCTGGCAGGACACGATGCGAGTCGTTATTTG
GCTACCTTCCATATAAACGATGTGAAAACCCGCGAGGCCGCTACTAGTGC
TACTGTCGATGCTGTAGATGGGAGCAGGCAAAAGGGGGTGAATTGTGGAG
GTATAGGTGGTAGTGGATTTGATGTGGGGTTAGAGGGGCTTTCTTACGAG
GAGCACTGGAGGCTGGAATCGCACTTCGTGCGGATGGTGGAAATGTTTAG
GGCCGTAGCCGTGCTGGAAGACGATGATCACACCAGGATCTTCGGCATAC
CGTTTGGCGGCGCGGGAGGGATAAGGTCGCACCTAGCACAGCTGGATCAA
CAGTACGATACAGCAGTACACAGCAGTGGCGGCAGCAACAACAGCCAGGC
CTCGTCGAACATCTCTCCAACACCGTCACCACGACCATCGCTACCGTCGT
TACCAAATACCAACCGAGCGGTCGAACTACATTCCTTAGTCGAGGGCGTT
GATGCAGAAGCAATAAAACGCCTCCTGGACGGTATGCCCAGCGAGGGGAA
AGCAGTCGTCGGCGCCGTGTTGGCGACGCGTCCTTCTTCAGTCAGTAGTG
GTGCCGTCGAGGAGGGCGACTACTGCTCCCAGGCAGAAAGCAAAAAGCCG
CTTGTCGACGCGAAGTGTCCTCGAACAGGGATGACACCGTTGCTTAAAGC
AGTGGAAGGCGCATCCGAGGGCGTCGTGCGAGTGTTATTGGGTGCCGGGG
CAAACGTGCGATGTCAGGATCTTCGGCATACCGTTTGGCGGCGCGGGAGG
GATAAGGTCGCACCTAGCACAGCTGGATCAACAGTACGATACAGCAGTAC
ACAGCAGTGGCGGCAGCAACAACAGCCAGGCCTCGTCGAACATCTCTCCA
ACACCGTCACCACGACCATCGCTACCGTCGTTACCAAATACCAACCGAGC
GGTCGAACTACATTCCTTAGTCGAGGGCGTTGATGCAGAAGCAATAAAAC
GCCTCCTGGACGGTATGCCCAGCGAGGGGAAAGCAGTCGTCGGCGCCGTG
TTGGCGACGCGTCCTTCTTCAGTCAGTAGTGGTGCCGTCGAGGAGGGCGA
CTACTGCTCCCAGGCAGAAAGCAAAAAGCCGCTTGTCGACGCGAAGTGTC
CTCGAACAGGGATGACACCGTTGCTTAAAGCAGTGGAAGGCGCATCCGAG
GGCGTCGTGCGAGTGTTATTGGGTGCCGGGGCAAACGTGCGATGTCAGGC
AGCACTTTACGACGGCGACGACGCGATGAGGCTTGCTGAACGGCTCGGTG
ATCGGGAGGAAATAGTGGAGATGTTGCGTCCTCACTACGCGTCGTAAGCA
GCACTTTACGACGGCGACGACGCGATGAGGCTTGCTGAACGGCTCGGTGA
TCGGGAGGAAATAGTGGAGATGTTGCGTCCTCACTACGCGTCGTAA
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