mRNA_H-paniculata_contig9313.17096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9313.17096.1
Unique NamemRNA_H-paniculata_contig9313.17096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 201 bits (511), Expect = 1.090e-54
Identity = 112/302 (37.09%), Postives = 166/302 (54.97%), Query Frame = 1
Query:    1 DTKLLHERLGHVRDLLTVARQQSIRLSRKL-------GVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVDK-SFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            D+ L H+RLGH     T+ R  S  L + L        +C  C+ GK  + P       R TE L+LV++ + GP+   S  G ++ ++F+DD +RM  V+ L++KS+   +  +F+  V    GL++KRLRSD+G EYT   F++F    GI+ + +  YTPQQ    E   R+            + EMAR       +   +WAEAV ++V+ LN  PT+     TP+E WHG+TP ++HL+VFGC  Y +    +R KL+ K+  G+F GY   S  Y I NP TK I +SR+V+FDE
Sbjct:  392 DSFLWHKRLGHF-SYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRT------------VMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 199 bits (507), Expect = 1.660e-54
Identity = 120/298 (40.27%), Postives = 166/298 (55.70%), Query Frame = 1
Query:   10 LLHERLGHVRDL-LTVARQQSI-----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPV-DKSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            L H R GH+    L +  Q+S+      +  +  +C  C  GK  R P  +    R   PLELV++ I GP    SF   R+ I+FVDD SRM  VY L QKSEA    KQF+      +G  +K LR+D GGE+T   F ++   NGIK+E +A YTPQQ    E   R+            I EMAR+     ++ + +WAEA+ +AV  LNR+PT+    +TP+E WH   PK+D  ++FGCTAY    SQ+R K ++K    +F GY D S +Y +I+P+TKS+ +SR V FDE
Sbjct:  124 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPF-SQSSWRAKAPLELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRT------------IVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 408          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 199 bits (507), Expect = 3.690e-54
Identity = 120/298 (40.27%), Postives = 166/298 (55.70%), Query Frame = 1
Query:   10 LLHERLGHVRDL-LTVARQQSI-----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPV-DKSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            L H R GH+    L +  Q+S+      +  +  +C  C  GK  R P  +    R   PLELV++ I GP    SF   R+ I+FVDD SRM  VY L QKSEA    KQF+      +G  +K LR+D GGE+T   F ++   NGIK+E +A YTPQQ    E   R+            I EMAR+     ++ + +WAEA+ +AV  LNR+PT+    +TP+E WH   PK+D  ++FGCTAY    SQ+R K ++K    +F GY D S +Y +I+P+TKS+ +SR V FDE
Sbjct:  361 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPF-SQSSWRAKAPLELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRT------------IVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKREKFDEKGEKYIFVGYSDQSKAYRLIDPRTKSLVISRDVIFDE 645          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A251TN47_HELAN (Putative zinc finger, CCHC-type n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251TN47_HELAN)

HSP 1 Score: 194 bits (492), Expect = 3.860e-52
Identity = 113/301 (37.54%), Postives = 164/301 (54.49%), Query Frame = 1
Query:    1 DTKLLHERLGHVR--DLLTVARQQSI----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVDK-SFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            ++ L H R GH+    L  + +  ++    ++++   VC  C  GK +R+P     + R +EPL+LV+S I GP++  S GGC++ I F+DD SR   VY L+ KS+AL   K F++ V      +IK +R+D GGEY    F+ F   NGI  + +  YTPQQ    E   R+            + E++R+      + + YWAEAV  A + LNRA T+   + TP E W G+ P +DHLRVFGC AYV    Q R KL+DK    +F GY ++S  Y + NP T  + +SR V F E
Sbjct:  436 NSTLWHRRYGHLNLETLHDMGKNGTVNGLPKINKSEHVCEGCVFGKHARKPFSKKAKWRASEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIFKQLVENQIERKIKGIRTDRGGEYCGHEFQNFLKNNGIHHQLTTSYTPQQNGVAERKNRT------------LMELSRSMLKMKELPNTYWAEAVACATYLLNRATTKSVPKLTPQEAWSGKKPNVDHLRVFGCIAYVHIPKQHRSKLDDKTERAIFVGYSEHSKGYKLFNPITHKMIISRDVIFSE 724          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A251SKN6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SKN6_HELAN)

HSP 1 Score: 193 bits (491), Expect = 5.610e-52
Identity = 113/302 (37.42%), Postives = 167/302 (55.30%), Query Frame = 1
Query:    1 DTKLL-HERLGHVR-DLLTVARQQSI-----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPV-DKSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            DT +L H+R GHV  D L     + +     ++ ++  +C  C  GK +++        + ++PL+LV+S I GP+  +S GGCR+ I F+DD +R   VY L+ KSEAL   K+F+    + +   IK LRSD GGEY    F+++  VNGI+ + +  Y+PQQ    E   R+            + E++R+      + + YWAEAV  A + LNR  T+     TPYE W+G  P ++HL+VFGC AYV    Q+R KL+ K    VF GY +NS  Y + NP++  I +SR V FDE
Sbjct: 1181 DTTILWHKRYGHVNVDTLISMENKGLVFGLPKIMKRESLCEGCISGKQTKKTFPRKAIWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALSYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNEFQEYLKVNGIRHQLTNSYSPQQNGVAERKNRT------------LMELSRSMMNAKELPTCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 1470          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: Q9LH44_ARATH (Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9LH44_ARATH)

HSP 1 Score: 191 bits (484), Expect = 4.600e-51
Identity = 108/303 (35.64%), Postives = 167/303 (55.12%), Query Frame = 1
Query:    4 TKLLHERLGHVRDLLTVARQQSIRLSRKL-------GVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVD-KSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRE-TPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDEE 885
            T L H+R GHV +   +   Q++++  KL       G+C+ACE GK SR+      Q  T + LEL++S + GP+  +S  G R+ + F+DD SRM  VY L+ KSE +   K F+  V   +  RIKRLR+D GGE+  + F +    +GI  E +  Y+PQQ    E   R+            + EMAR+      + +++WAEA+ ++ +  NR P++   +  TP E W G+ P +DHL+VFGC  Y+    ++RRKL+ KA  G+F GY + S  Y +     + I++S+ V FDE+
Sbjct:  454 TDLWHKRFGHV-NYDKIETMQTLKIVEKLPKFEVIKGICAACEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYSPQQNGVAERRNRT------------LVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEIWSGKKPSVDHLKVFGCVCYIHIPDEKRRKLDTKAKQGIFVGYSNESKGYRVFLLNEEKIEVSKDVTFDEK 743          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 190 bits (483), Expect = 6.200e-51
Identity = 112/302 (37.09%), Postives = 166/302 (54.97%), Query Frame = 1
Query:    1 DTKLL-HERLGHVR-DLLTVARQQSI-----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPV-DKSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            DT +L H+R GHV  D L     + +     ++ ++  +C  C  GK +++        + ++PL+LV+S I GP+  +S GGCR+ I F+DD +R   VY L+ KSEAL   K+F+    + +   IK LRSD GGEY    F+++  VN I+ + +  Y+PQQ    E   R+            + E++R+      + + YWAEAV  A + LNR  T+     TPYE W+G  P ++HL+VFGC AYV    Q+R KL+ K    VF GY +NS  Y + NP++  I +SR V FDE
Sbjct:  429 DTSILWHKRYGHVNVDTLINMENKGLVFGLPKIMKQESLCEGCISGKQTKKTFPRKAMWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALNYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNAFQEYLKVNCIRHQLTNSYSPQQNGVAERKNRT------------LMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRRDKLDKKTEKTVFVGYSENSKGYKLYNPQSNKIIISRDVVFDE 718          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 188 bits (478), Expect = 2.620e-50
Identity = 110/298 (36.91%), Postives = 157/298 (52.68%), Query Frame = 1
Query:   10 LLHERLGHVR--DLLTVARQQSI----RLSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVD-KSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDE 882
            L H R GHV    L  +   +++    ++ +   +C  C  GK +R+P       R +EPL+L++S I GP+  +S GGCR+ I F+DD SR   VY L+ KS+AL   + F+R      G +IK +R+D GGEY    F+ F   NGI  + +  YTPQQ    E   R+            + E++R+      + + YWAEAV  A + LNR  T+     TP E W G+ P +DHLR+FGC AYV    Q R KL+ K    +F GY ++S +Y + NP T    +SR V F E
Sbjct:  356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRT------------LMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNRTKLDVKTERVIFVGYSEHSKAYKLYNPVTNRTIISRDVIFSE 641          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: A0A5H2YBV8_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YBV8_PRUDU)

HSP 1 Score: 187 bits (475), Expect = 4.510e-50
Identity = 114/299 (38.13%), Postives = 158/299 (52.84%), Query Frame = 1
Query:   10 LLHERLGHV--RDLLTVARQQSIR----LSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVDK-SFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDEE 885
            L H R GH+    L  + +Q  +R    +  +  VC AC  GK  R         R + PLELV+S + GP++  S GG R+ + F+DD SR   VY L+ KSE     K F+    + +G  +K LRSD GGE++   F  F   NGIK +F+A YTPQQ    E   R+            I E+AR+      M +R+WAEAV  AV+ LNRA +     +TP E W G  P + HLR+FG  AY     + RRKL+DK+   +  GY + + +Y + NP T  I +SR V+F+EE
Sbjct:  496 LWHLRYGHLSFNTLSLMGKQHMVRGLPTIQHQTQVCEACVLGKHQRNSFLTGYSWRASHPLELVHSDVCGPMNTTSTGGNRYFLTFIDDYSRKTWVYFLKYKSEVFDYFKVFKALAEKQSGFALKTLRSDQGGEFSSNVFENFLKENGIKHQFTARYTPQQNGVAERKNRT------------IMELARSMLKAKAMPNRFWAEAVACAVYLLNRASSNSVEGKTPQEAWSGLKPCISHLRIFGSIAYSHIPDETRRKLDDKSEKCILVGYSEKAKAYKLFNPLTNKIIVSRDVKFNEE 782          
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 187 bits (476), Expect = 5.330e-50
Identity = 111/299 (37.12%), Postives = 164/299 (54.85%), Query Frame = 1
Query:   10 LLHERLGHV--RDLLTVARQQSIR----LSRKLGVCSACEKGKASRQPVKNYRQDRTTEPLELVNSGIAGPVD-KSFGGCRFAIIFVDDCSRMRKVYTLRQKSEALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFSADYTPQQERCGEVSWRSXXXXXXXXXXXSIFEMARASTITANMGSRYWAEAVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQQRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDEE 885
            L H RLGH+  R +  +AR+  +R    +     +C  C   K +RQ   N  Q R  EPLELV + + GP+  ++ GG R+ ++ VDD  R   VY ++ K +A    K+F+  V + +  +IK LR+D GGE+T + F  F   +GI ++ +A YTPQQ   G V  R+           ++ E  R+   T  +   +W EAVR AV+ LNR  T+  N  TPYE+W G+ P L HLRVFGC AYV  +  +  KL+D++ T V+ G +  S +Y + NPK   I + R V F+E+
Sbjct:  481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWRAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQN--GVVERRNR----------TVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYVK-KFNEITKLSDRSETMVYLGVEKGSKAYRLYNPKENKIVVGRDVEFEEK 766          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9313.17096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA1.090e-5437.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1QWW3_PRUDU1.660e-5440.27Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU3.690e-5440.27Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A251TN47_HELAN3.860e-5237.54Putative zinc finger, CCHC-type n=2 Tax=Helianthus... [more]
A0A251SKN6_HELAN5.610e-5237.42Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
Q9LH44_ARATH4.600e-5135.64Copia-like retrotransposable element n=1 Tax=Arabi... [more]
A0A251UIF2_HELAN6.200e-5137.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A251T2S6_HELAN2.620e-5036.91Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A5H2YBV8_PRUDU4.510e-5038.13Transposable element protein n=1 Tax=Prunus dulcis... [more]
UPI0016531AD15.330e-5037.12uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9313contigH-paniculata_contig9313:8289..9182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score199.9
Seed ortholog evalue1.7e-48
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size894
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931159.1636364-CDS-H-paniculata_contig9313:8288..91821622931159.1636364-CDS-H-paniculata_contig9313:8288..9182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9313 8289..9182 +
1691481617.0692725-CDS-H-paniculata_contig9313:8288..91821691481617.0692725-CDS-H-paniculata_contig9313:8288..9182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9313 8289..9182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9313.17096.1prot_H-paniculata_contig9313.17096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9313 8289..9182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9313.17096.1

>prot_H-paniculata_contig9313.17096.1 ID=prot_H-paniculata_contig9313.17096.1|Name=mRNA_H-paniculata_contig9313.17096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=298bp
DTKLLHERLGHVRDLLTVARQQSIRLSRKLGVCSACEKGKASRQPVKNYR
QDRTTEPLELVNSGIAGPVDKSFGGCRFAIIFVDDCSRMRKVYTLRQKSE
ALWSLKQFERDVARANGLRIKRLRSDHGGEYTWKPFRQFGAVNGIKQEFS
ADYTPQQERCGEVSWRSWRSWRSWRSWRSIFEMARASTITANMGSRYWAE
AVRSAVHCLNRAPTRPHNRETPYEKWHGQTPKLDHLRVFGCTAYVMFQSQ
QRRKLNDKAWTGVFPGYDDNSPSYCIINPKTKSIQLSRHVRFDEENFV
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mRNA from alignment at H-paniculata_contig9313:8289..9182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9313.17096.1 ID=mRNA_H-paniculata_contig9313.17096.1|Name=mRNA_H-paniculata_contig9313.17096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=894bp|location=Sequence derived from alignment at H-paniculata_contig9313:8289..9182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTACTACACGAGCGACTTGGTCATGTTCGAGACCTTCTCAC AGTCGCGCGGCAACAAAGCATAAGGTTAAGCAGGAAGCTCGGTGTCTGCT CGGCCTGTGAGAAGGGGAAAGCGTCGAGACAGCCTGTGAAAAACTATCGA CAAGACCGAACGACCGAGCCGTTGGAGCTGGTGAACAGCGGTATAGCCGG ACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCG ACGACTGCAGCAGAATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAG GCACTATGGTCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAACGG TTTACGGATTAAGCGCCTTCGGTCGGATCACGGAGGAGAATATACGTGGA AGCCTTTTAGGCAATTCGGCGCGGTAAATGGCATCAAGCAGGAGTTCTCT GCCGACTACACACCGCAACAAGAACGGTGTGGTGAAGTCAGCTGGCGCAG CTGGCGCAGCTGGCGCAGCTGGCGCAGCTGGCGCAGCATTTTCGAGATGG CAAGAGCCAGCACGATCACCGCCAACATGGGTAGTCGATATTGGGCGGAA GCGGTGCGCTCGGCAGTGCACTGCCTAAATCGCGCCCCGACACGACCGCA CAACCGAGAAACGCCGTACGAAAAATGGCACGGCCAGACACCGAAGTTGG ACCACCTTCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAGTCGCAA CAGAGACGCAAGCTCAACGACAAAGCATGGACGGGGGTGTTTCCGGGATA CGACGATAACAGCCCGAGTTATTGCATAATTAACCCGAAAACCAAAAGCA TCCAGTTGAGCAGGCACGTGAGATTTGACGAGGAGAACTTCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig9313:8289..9182+

>mRNA_H-paniculata_contig9313.17096.1 ID=mRNA_H-paniculata_contig9313.17096.1|Name=mRNA_H-paniculata_contig9313.17096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig9313:8289..9182+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTACTACACGAGCGACTTGGTCATGTTCGAGACCTTCTCAC
AGTCGCGCGGCAACAAAGCATAAGGTTAAGCAGGAAGCTCGGTGTCTGCT
CGGCCTGTGAGAAGGGGAAAGCGTCGAGACAGCCTGTGAAAAACTATCGA
CAAGACCGAACGACCGAGCCGTTGGAGCTGGTGAACAGCGGTATAGCCGG
ACCGGTGGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCG
ACGACTGCAGCAGAATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAG
GCACTATGGTCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAACGG
TTTACGGATTAAGCGCCTTCGGTCGGATCACGGAGGAGAATATACGTGGA
AGCCTTTTAGGCAATTCGGCGCGGTAAATGGCATCAAGCAGGAGTTCTCT
GCCGACTACACACCGCAACAAGAACGGTGTGGTGAAGTCAGCTGGCGCAG
CTGGCGCAGCTGGCGCAGCTGGCGCAGCTGGCGCAGCATTTTCGAGATGG
CAAGAGCCAGCACGATCACCGCCAACATGGGTAGTCGATATTGGGCGGAA
GCGGTGCGCTCGGCAGTGCACTGCCTAAATCGCGCCCCGACACGACCGCA
CAACCGAGAAACGCCGTACGAAAAATGGCACGGCCAGACACCGAAGTTGG
ACCACCTTCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAGTCGCAA
CAGAGACGCAAGCTCAACGACAAAGCATGGACGGGGGTGTTTCCGGGATA
CGACGATAACAGCCCGAGTTATTGCATAATTAACCCGAAAACCAAAAGCA
TCCAGTTGAGCAGGCACGTGAGATTTGACGAGGAGAACTTCGTAGACACC
AAGTTACTACACGAGCGACTTGGTCATGTTCGAGACCTTCTCACAGTCGC
GCGGCAACAAAGCATAAGGTTAAGCAGGAAGCTCGGTGTCTGCTCGGCCT
GTGAGAAGGGGAAAGCGTCGAGACAGCCTGTGAAAAACTATCGACAAGAC
CGAACGACCGAGCCGTTGGAGCTGGTGAACAGCGGTATAGCCGGACCGGT
GGACAAGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACGACT
GCAGCAGAATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAGGCACTA
TGGTCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAACGGTTTACG
GATTAAGCGCCTTCGGTCGGATCACGGAGGAGAATATACGTGGAAGCCTT
TTAGGCAATTCGGCGCGGTAAATGGCATCAAGCAGGAGTTCTCTGCCGAC
TACACACCGCAACAAGAACGGTGTGGTGAAGTCAGCTGGCGCAGCTGGCG
CAGCTGGCGCAGCTGGCGCAGCTGGCGCAGCATTTTCGAGATGGCAAGAG
CCAGCACGATCACCGCCAACATGGGTAGTCGATATTGGGCGGAAGCGGTG
CGCTCGGCAGTGCACTGCCTAAATCGCGCCCCGACACGACCGCACAACCG
AGAAACGCCGTACGAAAAATGGCACGGCCAGACACCGAAGTTGGACCACC
TTCGCGTCTTCGGCTGTACGGCGTATGTTATGTTCCAGTCGCAACAGAGA
CGCAAGCTCAACGACAAAGCATGGACGGGGGTGTTTCCGGGATACGACGA
TAACAGCCCGAGTTATTGCATAATTAACCCGAAAACCAAAAGCATCCAGT
TGAGCAGGCACGTGAGATTTGACGAGGAGAACTTCGTA
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