mRNA_H-paniculata_contig9310.17095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A6H5L0U1_9PHAE (Copper homeostasis protein cutC homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U1_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.060e-76 Identity = 140/237 (59.07%), Postives = 168/237 (70.89%), Query Frame = 3 Query: 3 SATQAGLGGAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTH-RQQSSVQLGASG-GGAGDVMMRVSPDLVSNLL 707 SA+QA GGAHR+ELCAN AQGGVTPS GDI+ ++ A+ GSHTRVHVLIRPRPGDFVYS LEKQ M D+ AAV GAHGVVIG A +CSITFHRAFDCCTT+ VAA+E+L+RLGVDRVLTSGR SAW+GR I+RL+EA RI ++PGAG+T NV L+ TGA+E+HVGS CQE VP+T R+ ++V +G G G A + RVS V +L Sbjct: 25 SASQARSGGAHRIELCANLAQGGVTPSAGDIEGALLAVRGSHTRVHVLIRPRPGDFVYSVLEKQVMEKDVSAAVKAGAHGVVIGVAKAXXXXXXXXX------AKDACSITFHRAFDCCTTDEVAAMESLVRLGVDRVLTSGRHESAWDGRAVISRLVEASGGRIGILPGAGVTHGNVKQLLLHTGAKEVHVGSACQEKVPRTALREDATVCVGLVGEGSAAAGLKRVSAGRVCEML 255
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A1T3NS32_9ACTN (PF03932 family protein CutC n=3 Tax=Embleya TaxID=2699295 RepID=A0A1T3NS32_9ACTN) HSP 1 Score: 187 bits (476), Expect = 1.350e-51 Identity = 108/206 (52.43%), Postives = 135/206 (65.53%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHRQQSSVQLGA 644 GAHRVELCA+ +GG+TPS+G I+ +++A+ RVHV++RPR GDFVY E AM D++A A GA GVVIGAL G++D L+AAA S+TFHRAFD T +P AALE LI LGVDRVLTSG+ S EG IARL+ RIVVMPG GIT N++ ++A TGARE+H +G P THR + GA Sbjct: 30 GAHRVELCADLFEGGITPSLGLIETTLAAVEA--IRVHVIVRPRGGDFVYDEYEAAAMRRDVEAIRAAGAQGVVIGALTPEGDLDRPVIEALLAAAG-DLSVTFHRAFDM-TRDPHAALEELIELGVDRVLTSGQDSSVLEGAPLIARLITQAAGRIVVMPGGGITARNIDRVLAATGAREVHFAAGAILESPATHRNPNPYMGGA 231
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: UPI00104146C4 (copper homeostasis protein CutC n=1 Tax=Actinomadura fibrosa TaxID=111802 RepID=UPI00104146C4) HSP 1 Score: 185 bits (470), Expect = 7.140e-51 Identity = 103/197 (52.28%), Postives = 130/197 (65.99%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GAHRVELCA GG+TPS+G ++A++ A+ S RVHV+IRPR GDF++ E AM HD+ GAHGVVIGAL +GE+D T L+AAA+ +TFHRAFD T +P AALETL+ LGVDRVLTSG+ S EG IA L+ RIVVMPG G+T N+ ++A TGARE+H + + P HR Sbjct: 22 GAHRVELCAALFDGGLTPSLGTVRAALDAV--SSIRVHVIIRPRGGDFIFDEHEVAAMEHDVALVREAGAHGVVIGALTAAGEVDRPVTERLIAAAD-GLPVTFHRAFDM-TADPFAALETLVELGVDRVLTSGQDVSVLEGAPLIAELVRRAGDRIVVMPGGGVTARNIARVVAETGAREIHFAALSEAPSPAVHR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A8J3QX66_9ACTN (PF03932 family protein CutC n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QX66_9ACTN) HSP 1 Score: 185 bits (469), Expect = 9.950e-51 Identity = 107/204 (52.45%), Postives = 133/204 (65.20%), Query Frame = 3 Query: 6 ATQAGLGGAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 A A GGA RVELCA GG+TPSIG I+ +VS++ RVHV++RPR GDF+YS+ E + MV D++AAVA GAHG+VIGAL G+ID ETT L+ AA SITFHRAFD +P AALE LI LGVDRVLTSG+ S EG IA L++ RIVVM G G+ + N+ ++A TG ELH + P +R Sbjct: 14 AVAAEQGGADRVELCAALFDGGLTPSIGTIETAVSSVR--RIRVHVIVRPRGGDFIYSSREIETMVRDVRAAVAAGAHGIVIGALTPEGDIDVETTRRLIEAAG-DASITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQESSVLEGAPLIAELVKRAGDRIVVMAGGGVNERNIARILAETGVHELHFTAMVSADSPALYR 213
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A7W3LZP9_ACTNM (PF03932 family protein CutC n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3LZP9_ACTNM) HSP 1 Score: 184 bits (468), Expect = 1.430e-50 Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GAHRVELCA +GG+TP++G ++A+++A+ S RVH ++RPR GDF+Y E AM HD+ G HGVVIGAL +GE+D T L+AAA +TFHRAFD +P AALETL+ LGVDRVLTSG+ S EG IA L+E RIVVMPG G+T N+ ++A TGARE+H + E P HR Sbjct: 22 GAHRVELCAALFEGGLTPTLGTVRAALAAV--SSIRVHAIVRPRGGDFIYDEYEVAAMEHDVALLREAGVHGVVIGALTAAGEVDRPVTERLIAAAG-GLPVTFHRAFDMAA-DPFAALETLVDLGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIVVMPGGGVTDRNIARVLAATGAREVHFAALTDEPSPAVHR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A365H0Q2_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365H0Q2_9ACTN) HSP 1 Score: 184 bits (468), Expect = 1.430e-50 Identity = 105/197 (53.30%), Postives = 129/197 (65.48%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GAHRVELCA +GG+TPS+G I+A+++A+ S RVHV++RPR GDF++ E AM HD+ G HGVV+GAL G+IDE T LVAAA S+TFHRAFD T +P AALETL+ LGVDRVLTSG S EG IARL+E RI VMPG G+ N ++A TGARE H + +EA P R Sbjct: 22 GAHRVELCAALFEGGLTPSLGTIRAALAAV--SSIRVHVIVRPRGGDFIFDAHEIAAMEHDVALLREAGVHGVVVGALTPDGDIDEAVTGRLVAAAG-GLSVTFHRAFDM-TADPFAALETLVDLGVDRVLTSGHDVSVLEGAPLIARLVEQAGDRIAVMPGGGLNARNAARVVAATGAREFHFAALSEEASPAVFR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: UPI00082B44A4 (copper homeostasis protein CutC n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082B44A4) HSP 1 Score: 184 bits (467), Expect = 1.990e-50 Identity = 102/197 (51.78%), Postives = 129/197 (65.48%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GAHRVELC+ +GG+TPS+G ++A+++A+ S RV+V+IRPR GDF+Y E AM HD+ A GAHG+VIGAL GEID T L+AAA +TFHRAFD +P AALETLI LGVDRVLTSG+ S EG IA L+E RI+VMPG G+T N+ ++ TG RE+H + E P HR Sbjct: 22 GAHRVELCSALFEGGLTPSLGTVRAALAAV--STIRVNVIIRPRGGDFIYDEHEVAAMEHDVALAREAGAHGIVIGALTADGEIDRAVTERLIAAAG-GLPVTFHRAFDMAA-DPFAALETLIELGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIIVMPGGGVTSRNIGRILEATGVREVHFAALTDEPSPAVHR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: W2F0C2_9ACTN (PF03932 family protein CutC n=3 Tax=Microbispora TaxID=2005 RepID=W2F0C2_9ACTN) HSP 1 Score: 184 bits (467), Expect = 2.050e-50 Identity = 103/197 (52.28%), Postives = 131/197 (66.50%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GA RVELCA +GG+TP++G ++A+++A+ S RVHV+IRPR GDFV+ E +AM D++A GAHGVVIGAL GE+DEE L+ AA S+TFHRAFD +P AALETL+ LGVDRVLTSG+ +A EG IA L+E R+VVMPG GIT N ++ TGARE+H + E P HR Sbjct: 22 GAQRVELCAALFEGGLTPTLGTVEATLAAV--SSIRVHVIIRPRGGDFVFDRYEIEAMERDVEAVREAGAHGVVIGALTPQGEVDEEVAKRLIGAAE-GLSVTFHRAFDMAA-DPFAALETLVALGVDRVLTSGQDSTALEGAPLIASLVERAGDRLVVMPGGGITPRNAGRVVEATGAREIHFAALVDEPSPVVHR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A419HI55_9PSEU (PF03932 family protein CutC n=1 Tax=Pseudonocardiaceae bacterium YIM PH 21723 TaxID=2340915 RepID=A0A419HI55_9PSEU) HSP 1 Score: 184 bits (466), Expect = 2.690e-50 Identity = 103/197 (52.28%), Postives = 131/197 (66.50%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GA RVELC+ GG+TP++G I+A+++A++G +VHV+IRPR GDFVY E AM HD+ A G HGVVIGAL GEID E T L+ AA+ ITFHRAFD T +P+AAL+TLI LG++RVLTSG+ S EG IA L++ RIV+MPG GIT NV ++A TG RELH + + P HR Sbjct: 22 GAQRVELCSALFDGGLTPTLGTIRAALAAVSG--IKVHVIIRPRGGDFVYDAHEIDAMEHDLILAREAGVHGVVIGALTAEGEIDREVTERLIKAAD-GLPITFHRAFDM-TVDPIAALDTLIELGIERVLTSGQEVSVLEGAPLIAELVQRAGDRIVIMPGGGITPRNVTRIVAETGVRELHFAALVDQDSPAVHR 214
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A372JI91_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura logoneensis TaxID=2293572 RepID=A0A372JI91_9ACTN) HSP 1 Score: 184 bits (466), Expect = 2.780e-50 Identity = 107/197 (54.31%), Postives = 130/197 (65.99%), Query Frame = 3 Query: 27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617 GA RVELCA GG+TP++G ++A+++A+ S RVHV+IRPR GDF++ E AM HD+ AA GAHGVVIGAL GEID T L+ AA S+TFHRAFD +P AAL+TLI LGVDRVLTSG+ SA EG IA L+ RIVVMPG GIT NV ++A TGARE+H + E P HR Sbjct: 22 GADRVELCAALFDGGLTPTLGTVRAALAAV--SSIRVHVIIRPRGGDFIFDEHEIAAMEHDVVAAREAGAHGVVIGALTPEGEIDRPVTERLMKAAG-GLSVTFHRAFDMAA-DPFAALDTLIDLGVDRVLTSGQDSSALEGAPLIAELVRRAGDRIVVMPGGGITPRNVARVVAETGAREIHFAALTPEPSPAVHR 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9310.17095.1 >prot_H-paniculata_contig9310.17095.1 ID=prot_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp MVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAback to top mRNA from alignment at H-paniculata_contig9310:2149..8443- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9310.17095.1 ID=mRNA_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6295bp|location=Sequence derived from alignment at H-paniculata_contig9310:2149..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9310:2149..8443- >mRNA_H-paniculata_contig9310.17095.1 ID=mRNA_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig9310:2149..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |