mRNA_H-paniculata_contig9308.17090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9308.17090.1
Unique NamemRNA_H-paniculata_contig9308.17090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.610e-38
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAAYFSDGAIAMLAGGP 243
            LDPN+GDAWAA YAFELQQGTE EQ DVL RCVAAEPAHGELWTS+SKTTENRRL KA ILKKVVAAYFSDGA+ ++ GGP
Sbjct:  382 LDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKTTENRRLDKASILKKVVAAYFSDGAVVVIPGGP 462
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.680e-37
Identity = 68/81 (83.95%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAAYFSDGAIAMLAGGP 243
            LDPN+GDAWAA YAFELQQGTE EQ DVL RCVAAEPAHGELWTS+SKTTENRRL KA ILKKVVAAYFSDGA+ ++ GGP
Sbjct:  743 LDPNMGDAWAAYYAFELQQGTEVEQKDVLDRCVAAEPAHGELWTSVSKTTENRRLDKASILKKVVAAYFSDGAVVVIPGGP 823
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: D8LE81_ECTSI (Pre-mRNA splicing factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE81_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.040e-28
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKT--TENRRLSKAEILKKVVAAYFS-DGAIAMLAGGP 243
            LDP +GDAWA  YAFELQQGT+ E+ DVL RCVAA+P+HGELW SISKT  TE +R  KA IL+KVVAAYFS +G + ++  GP
Sbjct:   14 LDPYMGDAWAVHYAFELQQGTDVERTDVLGRCVAADPSHGELWKSISKTNTTEKQRFDKASILRKVVAAYFSGNGVVVVIPRGP 97
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.960e-22
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAAYFS 210
            LD + GDAWAA +AFELQQGT  +QADV+ RCV AEP+HGELW S+SK T N+RL +  +L+KVVA YF+
Sbjct:  743 LDADNGDAWAAFFAFELQQGTAEQQADVIARCVKAEPSHGELWCSVSKKTGNQRLDRETVLRKVVAQYFA 812
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.980e-21
Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAAYFSDG 216
            LDP++GDAWA  YAFELQ G + +Q ++LKRCVAAEP HGELW   SK TENRR +   ILKKVVAA    G
Sbjct:  254 LDPDLGDAWALFYAFELQHGKKEDQEELLKRCVAAEPTHGELWCGTSKKTENRRCNTETILKKVVAALAGIG 325
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A7S3XY73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XY73_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 1.140e-20
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVA 198
            L P +GDAWA  YAFEL+QGT  EQ  VL RCVAAEPAHGELW +++K T NRRL  AE+L+KVVA
Sbjct:  647 LRPGLGDAWARFYAFELRQGTPEEQRAVLDRCVAAEPAHGELWQAVAKRTANRRLGPAEVLRKVVA 712
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A061ET01_THECC (Pre-mRNA splicing factor-related n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A061ET01_THECC)

HSP 1 Score: 82.8 bits (203), Expect = 1.190e-18
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAA 201
            L P++GD WA  Y FELQ+G+E  Q DV+KRCVAAEP HGE W +ISK  EN       ILKKVV A
Sbjct:   36 LAPDIGDFWALYYKFELQRGSEENQKDVMKRCVAAEPKHGEKWQAISKAVENSHQPTEAILKKVVVA 102
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: UPI00098E1367 (protein STABILIZED1 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E1367)

HSP 1 Score: 88.2 bits (217), Expect = 1.670e-18
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAA 201
            L P+VGD WA  Y FELQ G E  Q DVLKRCVAAEP HGE WTSISK  EN  L    ILKKVV A
Sbjct:  862 LSPDVGDFWALYYKFELQHGNEDTQKDVLKRCVAAEPKHGERWTSISKAVENSHLLVEAILKKVVVA 928
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BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A5P1FRW4_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FRW4_ASPOF)

HSP 1 Score: 88.2 bits (217), Expect = 1.680e-18
Identity = 45/67 (67.16%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVAA 201
            L P+VGD WA  Y FELQ G E  Q DVLKRCVAAEP HGE WTSISK  EN  L    ILKKVV A
Sbjct:  934 LSPDVGDFWALYYKFELQHGNEDTQKDVLKRCVAAEPKHGERWTSISKAVENSHLLVEAILKKVVVA 1000
[Close]
BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.260e-18
Identity = 37/66 (56.06%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTTENRRLSKAEILKKVVA 198
            L+P++GD+WA  YAFEL+ G+E ++++VLK+C+ A+P HG +WT++SK+ EN R+SK  ILKKVVA
Sbjct:  866 LNPDLGDSWAYYYAFELRHGSETDKSEVLKKCLEADPTHGGIWTAVSKSVENWRVSKESILKKVVA 931
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9308.17090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYH2_9PHAE2.610e-3883.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI2.680e-3783.95PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LE81_ECTSI1.040e-2865.48Pre-mRNA splicing factor, putative n=1 Tax=Ectocar... [more]
A0A835YM25_9STRA6.960e-2264.29PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2USD3_9STRA1.980e-2163.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XY73_HETAK1.140e-2068.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A061ET01_THECC1.190e-1859.70Pre-mRNA splicing factor-related n=2 Tax=Pentapeta... [more]
UPI00098E13671.670e-1867.16protein STABILIZED1 n=1 Tax=Asparagus officinalis ... [more]
A0A5P1FRW4_ASPOF1.680e-1867.16Uncharacterized protein n=1 Tax=Asparagus officina... [more]
A0A4D9D6Q2_9STRA4.260e-1856.06Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9308contigH-paniculata_contig9308:1408..1842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6.9e-32
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
Ec32 ortholog descriptionpre-mRNA splicing factor, putative
Ec32 orthologEc-00_001250.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.4516113-CDS-H-paniculata_contig9308:1407..14991622931158.4516113-CDS-H-paniculata_contig9308:1407..1499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9308 1408..1499 +
1691481616.7375193-CDS-H-paniculata_contig9308:1407..14991691481616.7375193-CDS-H-paniculata_contig9308:1407..1499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9308 1408..1499 +
1622931158.466337-CDS-H-paniculata_contig9308:1679..18421622931158.466337-CDS-H-paniculata_contig9308:1679..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9308 1680..1842 +
1691481616.757666-CDS-H-paniculata_contig9308:1679..18421691481616.757666-CDS-H-paniculata_contig9308:1679..1842Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9308 1680..1842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9308.17090.1prot_H-paniculata_contig9308.17090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9308 1408..1842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9308.17090.1

>prot_H-paniculata_contig9308.17090.1 ID=prot_H-paniculata_contig9308.17090.1|Name=mRNA_H-paniculata_contig9308.17090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
LDPNVGDAWAASYAFELQQGTEAEQADVLKRCVAAEPAHGELWTSISKTT
ENRRLSKAEILKKVVAAYFSDGAIAMLAGGPGSGG
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mRNA from alignment at H-paniculata_contig9308:1408..1842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9308.17090.1 ID=mRNA_H-paniculata_contig9308.17090.1|Name=mRNA_H-paniculata_contig9308.17090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig9308:1408..1842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGACCCCAACGTGGGCGACGCGTGGGCCGCGTCTTACGCGTTCGAGCT
GCAGCAGGGCACGGAGGCGGAGCAAGCTGATGTGCTCAAGAGGTAGCTAA
CTGTTGCTATTGTTGTTGTTATTATTCGAATATTTATATAGTTCTTATCG
TCATATGTTAGTATTGTTCTTGTTATATTCATTGTTATCCTTTTGTGTTA
TTTTCCTCGCCTTCATTGTATTGTTGCACTCTTTGTTTTTTCGTGTCTGT
ACGGTGGAAAATAACACACAAGGTGCGTGGCGGCAGAACCCGCCCACGGA
GAACTATGGACGTCCATCTCTAAAACGACCGAAAATCGACGACTGAGCAA
AGCAGAAATCCTCAAGAAAGTTGTGGCGGCCTACTTTTCGGATGGTGCCA
TAGCAATGCTGGCGGGTGGACCGGGTTCGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9308:1408..1842+

>mRNA_H-paniculata_contig9308.17090.1 ID=mRNA_H-paniculata_contig9308.17090.1|Name=mRNA_H-paniculata_contig9308.17090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig9308:1408..1842+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGACCCCAACGTGGGCGACGCGTGGGCCGCGTCTTACGCGTTCGAGCT
GCAGCAGGGCACGGAGGCGGAGCAAGCTGATGTGCTCAAGAGTTGGACCC
CAACGTGGGCGACGCGTGGGCCGCGTCTTACGCGTTCGAGCTGCAGCAGG
GCACGGAGGCGGAGCAAGCTGATGTGCTCAAGAGGTGCGTGGCGGCAGAA
CCCGCCCACGGAGAACTATGGACGTCCATCTCTAAAACGACCGAAAATCG
ACGACTGAGCAAAGCAGAAATCCTCAAGAAAGTTGTGGCGGCCTACTTTT
CGGATGGTGCCATAGCAATGCTGGCGGGTGGACCGGGTTCGGGGGGGGTG
CGTGGCGGCAGAACCCGCCCACGGAGAACTATGGACGTCCATCTCTAAAA
CGACCGAAAATCGACGACTGAGCAAAGCAGAAATCCTCAAGAAAGTTGTG
GCGGCCTACTTTTCGGATGGTGCCATAGCAATGCTGGCGGGTGGACCGGG
TTCGGGGGGG
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