mRNA_H-paniculata_contig9307.17089.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9307.17089.1
Unique NamemRNA_H-paniculata_contig9307.17089.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: D8LFH3_ECTSI (Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH3_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 7.120e-109
Identity = 151/219 (68.95%), Postives = 182/219 (83.11%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYGAVYDGYLPMCLSGSV 657
            W + M+ +EET+QYVDGMAFHWY     R LDGS+GWG LN T++ L  S  DKFILS+ESCNCP VDHSLEGGW RAEH  H++IAD+NSWS+ WVDWNLMLSYDGGPNHAGNLCD+PI++N+NHTDVIFQPMFY +GH SKFA+ GA RLKSHVTG Y+ GG  PS+ + G+EAT+YGCEGSVRQ+WEMSATG+++LAD +GA YD + P+CLS  +
Sbjct:  361 WAEEMMSNEETAQYVDGMAFHWYVASWNRLLDGSMGWGALNTTHNLL--SGRDKFILSTESCNCPNVDHSLEGGWKRAEHTLHEMIADVNSWSTGWVDWNLMLSYDGGPNHAGNLCDTPIVSNENHTDVIFQPMFYSIGHMSKFAQPGARRLKSHVTGLYQNGGSGPSTALAGYEATLYGCEGSVRQSWEMSATGRISLADNFGAQYDWFQPLCLSKDI 577
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A835Z8L7_9STRA (Glucosylceramidase, family GH30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L7_9STRA)

HSP 1 Score: 250 bits (638), Expect = 4.850e-76
Identity = 111/220 (50.45%), Postives = 151/220 (68.64%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERG--GGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYGAVYDGYLPMCLSGS 654
            WT+ ++ D  T++Y+DGMAFHWY+GG +R LDGS GWG +      L    H KF+LSSESC+CPFVDH+L+G W RAEH+AHD++ADL + +  WVDWN+ L YDGGPNHAGNLCD PI AN++H+  +  PM+++MGH S+F   G+ R+ SH  G Y  G  G R S V+ GFEA++  C+GSVRQ W +   G++ L D     +  + P+CL  +
Sbjct:  261 WTQILMHDPATAKYLDGMAFHWYYGGMDRGLDGSYGWGNVEEAGALLLP--HGKFMLSSESCHCPFVDHTLDGSWARAEHLAHDVLADLEAGAGGWVDWNIFLDYDGGPNHAGNLCDVPIYANEDHSGAVVGPMYHFMGHVSRFVPPGSRRIASHARGAYGAGTLGSRASGVLRGFEASLAPCDGSVRQRWALLPDGRVQLVDQLTEYFQYWKPVCLGSA 478
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A7S3HLU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLU9_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.250e-53
Identity = 98/240 (40.83%), Postives = 142/240 (59.17%), Query Frame = 1 
Query:    1 WTKGMLRDEETS---------QYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYGAV-------------YDGYLPMCLSGS 654
            WT+ ++  +E S         +YVDGMAFHWY  GG R  DG+ G+  +N ++H   E+    F+L++E C+CP V+    G W RAE +AHD++ DL + +  WVDWNL+++++GGPNH GNLCD+ ++ N++ TDV+ QP F+Y+ HFSKF   GA R+KS   G+Y      P+ +  G E  +YGCE SVRQ W   A  K + A   G V             YDG + +C++ S
Sbjct:   97 WTETLMVQQEVSKKHQEKKKHEYVDGMAFHWY-SGGARVEDGTYGYDAVNASHHLAPEA----FLLATEGCSCPGVE---VGNWLRAERLAHDVMFDLQNHAQGWVDWNLLVNHEGGPNHLGNLCDAALVTNEDLTDVVVQPKFHYLAHFSKFVPPGAVRIKSTAVGNYHFAPVDPN-IQAGVEVGMYGCERSVRQVWSFGAEVKTSAAQ--GRVLQLASAALTMDQSYDGTVRLCVARS 325
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A7S2V2A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2A4_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.400e-52
Identity = 83/191 (43.46%), Postives = 124/191 (64.92%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEM 573
            W + +  D E     DGMAFHWY GG +R +DG+ G+ +L R ++       DKFIL SE C+CP V +   G   RAE  AHDI+ DLN+WS  WVDWNL+L+++GGPNH GN+CD+PI+  ++ +DV+FQP ++Y GH +++ + GA  + S  T  Y++  G  ++++   E T++ C+GS RQ W +
Sbjct:  348 WAEILYADPEARAVFDGMAFHWYGGGVDRLIDGTYGYAMLQRLHNLAP----DKFILPSEGCSCPGVKY---GSILRAERKAHDIMQDLNNWSVGWVDWNLLLNFEGGPNHVGNICDAPILTREDFSDVVFQPEYFYTGHITRYVQPGAVNIYSSPTARYQKYKGGRANIIENLEGTLWSCDGSSRQEWTL 531
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A662Y065_9STRA (Ricin B-type lectin domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y065_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.450e-48
Identity = 89/216 (41.20%), Postives = 126/216 (58.33%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYGAVYDGYLPMCLS 648
            W + +      SQYVDGMAFHWY  GGER LDG+     LN T+      D  +F+L++ESCNCP V H  +  W RA+   HDI+ADLN++   WVDWNL+L + GGPNH GN CD+PII  ++  D   QPM+Y++ HFSK+   G+ R+K+HV   +   G   + +M  +++ +  C+GS RQ   ++   K+ +            P CLS
Sbjct:  332 WAEVIYNHPTASQYVDGMAFHWYEDGGERYLDGAEYHDHLNDTHFV----DETRFMLATESCNCPGVAHG-DDAWFRAQRYGHDIMADLNNYVVGWVDWNLLLDHTGGPNHKGNNCDAPIIVTESGKDFFVQPMYYFIQHFSKYIPVGSRRVKTHVAARFAEPG--EAQLMVDYQSALAACDGSSRQAIHVTEDSKMQVTG---------TPFCLS 531
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A8J4S4Y0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4S4Y0_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.780e-46
Identity = 86/201 (42.79%), Postives = 122/201 (60.70%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALAD 603
            W + +      +QYVDGMAFHWY    ER +DG      LN T+      D  +F+L++ESCNCP V H  E  W RA+   HDI+ DLN++ S WVDWNL+L + GGPNH  N CD+PII +++ TD   QPM+Y++ HFSK+   G+ R+K+HV   + + G +P   +  + + +  C+GS  Q W  +  GKLA+ D
Sbjct:  289 WAEEIYNHPTAAQYVDGMAFHWY--DDERYMDGVEYHERLNDTHFV----DPSRFLLATESCNCPDVAHGDEA-WFRAQRYGHDILTDLNNYVSGWVDWNLLLDHKGGPNHLDNNCDAPIILSEDGTDFHIQPMYYFIQHFSKYIPVGSRRVKTHVAARFAQPG-KPQLYVD-YPSMLATCDGSSHQKWRPTDDGKLAVTD 480
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: H3GVE2_PHYRM (Ricin B-type lectin domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVE2_PHYRM)

HSP 1 Score: 171 bits (433), Expect = 4.660e-46
Identity = 83/197 (42.13%), Postives = 123/197 (62.44%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKL 591
            W + +      SQYVDGMAFHWY  GGER +DG      LN T+     +D  +F+L+SESCNCP V    +  W RA+   HDI++DLN+  + WVDWNL+L + GGPNH GNLCD+PII  ++ +D   QPM+Y++ HFS+F   G+ R+++ V  H+ + G   + +   +++++  C+GS RQ    +  GK+
Sbjct:  334 WAEVIYNHPTASQYVDGMAFHWYEDGGERYMDGVEYPEHLNDTHF----NDQSRFMLASESCNCPGVAVGNDA-WFRAQRYGHDILSDLNNHVAGWVDWNLLLDHKGGPNHKGNLCDAPIILTEDGSDFNIQPMYYFIQHFSRFIPVGSRRVEAQVAAHFAKPG--DAQLYVDYQSSLAACDGSSRQTIHRTDDGKM 523
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A662WYZ5_9STRA (Ricin B-type lectin domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WYZ5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 5.600e-46
Identity = 81/197 (41.12%), Postives = 119/197 (60.41%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKL 591
            W + +      +QYVDGMAFHWY    ER +DG      LN T+      D  +F+L++ESCNCP V H  +  W RA+   HDI+ DLN++ + WVDWNL+L + GGPNH GN CD+PII  ++ +D   QPM+Y++ HFSK+   G+ R+K+ V  H+ + G   + +   + + +  C+GS RQ W  ++  KL
Sbjct:  194 WAEEIYNHPTAAQYVDGMAFHWY--DNERYMDGVEYHERLNDTHFV----DETRFMLATESCNCPDVAHG-DAAWFRAQRYGHDIMTDLNNYVAGWVDWNLLLDHKGGPNHLGNNCDAPIILTESGSDFYIQPMYYFIQHFSKYIPVGSRRVKTQVAAHFAQPG--DAQLYIDYPSMLAACDGSSRQKWNPTSDNKL 381
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BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A3F2RBF7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBF7_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.450e-46
Identity = 86/201 (42.79%), Postives = 122/201 (60.70%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALAD 603
            W + +      +QYVDGMAFHWY    ER +DG      LN T+      D  +F+L++ESCNCP V H  E  W RA+   HDI+ DLN++ S WVDWNL+L + GGPNH  N CD+PII +++ TD   QPM+Y++ HFSK+   G+ R+K+HV   + + G +P   +  + + +  C+GS  Q W  +  GKLA+ D
Sbjct:  342 WAEEIYNHPTAAQYVDGMAFHWY--DDERYMDGVEYHERLNDTHFV----DPSRFLLATESCNCPDVAHGDEA-WFRAQRYGHDILTDLNNYVSGWVDWNLLLDHRGGPNHLDNNCDAPIILSEDGTDFHIQPMYYFIQHFSKYIPVGSRRVKTHVAARFAQPG-KPQLYVD-YPSMLATCDGSSHQKWRPTDDGKLAVTD 533
[Close]
BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Match: A0A7R9UG94_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG94_9STRA)

HSP 1 Score: 169 bits (428), Expect = 7.360e-46
Identity = 89/229 (38.86%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:    1 WTKGMLRDEETSQ-YVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESD-HDKFILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLSYDGGPNHAGNLCDSPIIANQ-NHTDVIFQPMFYYMGHFSKFAKAGAHRL--------KSHVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYGAVYDGYLPMCLSGS 654
            WT+ +  D   ++ Y+DGM +HWY GG +R LDG+ G+  L R   A++ +D   K +L +E CNCP +  + E    RA+ +AH++IADLNS +  WVDWNL+L   GGPNH GN CD+P+  ++ + + V  QPM +YM H   F   G+ R+          +  G Y+  G  PS  +PG E T+  CE S RQ W + A+G+L + D    + DGY  +C++ +
Sbjct:  320 WTEAVFGDGSPARDYLDGMGYHWYAGGMDRRLDGTQGYNNLKRAAQAMKSADLSPKILLGTEGCNCPGIARTEEISLFRAQRIAHNLIADLNSHAQGWVDWNLILDQQGGPNHLGNFCDAPMALSRFDESLVSLQPMMFYMWHIEGFLPPGSQRVHWEWVSLESGYEPGAYKISG--PSGALPGLEMTIGTCESSSRQAWVLRASGQLQVWD---TIDDGYSGICVASA 543
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9307.17089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH3_ECTSI7.120e-10968.95Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus... [more]
A0A835Z8L7_9STRA4.850e-7650.45Glucosylceramidase, family GH30 n=1 Tax=Tribonema ... [more]
A0A7S3HLU9_9STRA1.250e-5340.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2V2A4_9STRA5.400e-5243.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A662Y065_9STRA2.450e-4841.20Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A8J4S4Y0_9STRA2.780e-4642.79Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GVE2_PHYRM4.660e-4642.13Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A662WYZ5_9STRA5.600e-4641.12Ricin B-type lectin domain-containing protein (Fra... [more]
A0A3F2RBF7_9STRA6.450e-4642.79Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A7R9UG94_9STRA7.360e-4638.86Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9307contigH-paniculata_contig9307:163..7033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.5
Seed ortholog evalue1.8e-89
Seed eggNOG ortholog2880.D8LFH3
KEGG rclassRC00059,RC00451
KEGG koko:K01201
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EggNOG free text desc.glucosylceramidase activity
EggNOG OGsCOG5520@1,KOG2566@2759
EC3.2.1.45
COG Functional cat.M
CAZyGH30
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons5
Model size657
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9307.17089.1prot_H-paniculata_contig9307.17089.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9307 175..7033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.0873206-UTR-H-paniculata_contig9307:162..1741622931158.0873206-UTR-H-paniculata_contig9307:162..174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9307 163..174 +
1691481616.580543-UTR-H-paniculata_contig9307:162..1741691481616.580543-UTR-H-paniculata_contig9307:162..174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9307 163..174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.1194768-CDS-H-paniculata_contig9307:174..2871622931158.1194768-CDS-H-paniculata_contig9307:174..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 175..287 +
1691481616.599314-CDS-H-paniculata_contig9307:174..2871691481616.599314-CDS-H-paniculata_contig9307:174..287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 175..287 +
1622931158.1368155-CDS-H-paniculata_contig9307:1905..20671622931158.1368155-CDS-H-paniculata_contig9307:1905..2067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 1906..2067 +
1691481616.6089244-CDS-H-paniculata_contig9307:1905..20671691481616.6089244-CDS-H-paniculata_contig9307:1905..2067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 1906..2067 +
1622931158.164199-CDS-H-paniculata_contig9307:4134..42191622931158.164199-CDS-H-paniculata_contig9307:4134..4219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 4135..4219 +
1691481616.6191685-CDS-H-paniculata_contig9307:4134..42191691481616.6191685-CDS-H-paniculata_contig9307:4134..4219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 4135..4219 +
1622931158.2031405-CDS-H-paniculata_contig9307:6215..63601622931158.2031405-CDS-H-paniculata_contig9307:6215..6360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 6216..6360 +
1691481616.6309314-CDS-H-paniculata_contig9307:6215..63601691481616.6309314-CDS-H-paniculata_contig9307:6215..6360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 6216..6360 +
1622931158.2196848-CDS-H-paniculata_contig9307:6893..70331622931158.2196848-CDS-H-paniculata_contig9307:6893..7033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 6894..7033 +
1691481616.6415174-CDS-H-paniculata_contig9307:6893..70331691481616.6415174-CDS-H-paniculata_contig9307:6893..7033Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9307 6894..7033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9307.17089.1

>prot_H-paniculata_contig9307.17089.1 ID=prot_H-paniculata_contig9307.17089.1|Name=mRNA_H-paniculata_contig9307.17089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MLRDEETSQYVDGMAFHWYWGGGERALDGSVGWGVLNRTYHALQESDHDK
FILSSESCNCPFVDHSLEGGWNRAEHMAHDIIADLNSWSSAWVDWNLMLS
YDGGPNHAGNLCDSPIIANQNHTDVIFQPMFYYMGHFSKFAKAGAHRLKS
HVTGHYERGGGRPSSVMPGFEATVYGCEGSVRQNWEMSATGKLALADYYG
AVYDGYLPMCLSGSV
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mRNA from alignment at H-paniculata_contig9307:163..7033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9307.17089.1 ID=mRNA_H-paniculata_contig9307.17089.1|Name=mRNA_H-paniculata_contig9307.17089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6871bp|location=Sequence derived from alignment at H-paniculata_contig9307:163..7033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGACTAAGGGCATGCTGCGCGACGAAGAGACTTCCCAGTACGTGGACGG
CATGGCCTTCCATTGGTACTGGGGCGGCGGAGAGCGAGCACTCGACGGAA
GCGTCGGCTGGGGTGTCCTGAACAGGTAGGGTCAAGGGCCGAAGGGACCA
ACGCATTTTGTACTACCGGATAGGCAACAGTTCGGGGCGAACTAATAATC
TTGTGATTGACCAGACGTGAAATTGGATGATGGCCTGTGACCTTTTTTAT
GAAATGCTTGATTTATTGATAATAGCAGTAGAACAACGCCTAGGCCCCGT
GAAGTTCTTGCTTGTATTGAGCCCTCGGAATTACTGTGCCCCTCGCAGTA
GGGACTCGCGTTGCAACATCATTGCTTGATAGACTCGCCGTGGCTTCGCT
ACGCTCGCGTGAAGATTCGTTTTTAGGAGTTACTTGAGTACAGCATGGAT
TATATATTCCAGAATCACGATGGCCACGACGATCACCATCCCATCGAATG
AAATAATGAAAACAGTGCTTCTCTACTTGTACTGACCTCAAGATGTTTGT
TTCAAAAACCGCTTCTAAAAAGAGTCAAATCCGCGAAAAACTACGGTTCA
CAGTGCTCCACTTGATTCCTCCGTATTGAGAGCAACTCTTGCCCGTCTGA
GGCAAGACCTGCATCGTCTGAGAGTTGAGATATTCACTTTTACGCTGATA
CTGGTTAGCTACGCTGTGGAGGCTCTCTTTTGCATCTTATATCACGTCTC
CAAACATATTGTTGGTGCTGCACGATGCATTTACATCTACGAAAATTATA
TGCGGCGGAATTACATCTTCAGCAGATGTCAGGCCTATCGGGAACTACTC
ATTACGGACCAACCGTGGTAGATTTCACGTAAGGACAACAAGAATTAGGT
GGGGGACCACAATGAACGAGTCTGAGTTGCTGTGACACGGGATGGGAACA
ATTTGAAGATTTCGCTGGCAATTCTTATCAGTCAGACGTGAAACCGAATG
CTATGTTATTTGTTCATTTATTTATATTCCTTATATTGAAGACTTTGCTT
TATAAACCTTCCGGCGCCGGAGTAGGGCTGTCTCGGAAATAGAAATGAAA
TATGTCGACAGTTTTTGAGCACTGCTGTGATTAAGCGCAAAGCTTCGCCT
ATTCCCTCCACCCGCTGGTGTGTATTGCTTGTACTTGGCCGACTGTCTCA
ACAGCGGCAGCTCCCTCTTGCCGTATTCATGAGATTAGGTCACTAGATAC
GCGTTGTTTTTTCCTGTTTTTTGGATGGGGATTAGATATAGACCGGCGCC
CAAAAGATTGCGTGAATTTAAATTATCAGTATCCAATTGACGATCTGGTG
GTATGATTACGATTTCTTATTCGGTTTCGTACGTATATTGACTGCCTATA
CGGTTTTACGAGTTAATCAAACCTTTTCCATTTCGCTTGCTCGGGGGCTC
ACCCATTGTGGATGCTCACCTGCATGCATCCGATGACGTCGTCGCAGCCA
ATTTTTAGAAACTGTAGTGCTTTTTTTTTTTTTTAATCATTGACAGCATG
AGAACTGGTCCCCAATACTCCTAGACTCACAAATTTGGTCCGATTTCATT
GTTCGATTAGCGCTATTGAATAGAAGAATTTTTATTTTTTTGCAAGTTTC
ATAATTGTTTTTTGTTTTTTTTCCCCTTTTAAGAGGTATCCCCAGCGTAT
CACTCTCCTTATGTCCCCCCTCTTTTCGTCTTGACATCGGTAGGACATAC
CATGCGTTGCAGGAGAGTGATCACGACAAGTTCATCCTGTCGAGTGAAAG
CTGTAATTGCCCCTTCGTCGACCACTCGCTGGAGGGTGGCTGGAACAGGG
CGGAGCACATGGCGCACGATATCATAGCCGACCTCAACAGCTGGTCCTCC
GCCTGGTGAGAACCAGCCTCTCATTTTTTCATGATGACGGTGGTGGTTGC
GGTACTGGCGATGTGTTTCAATTATGACAGTTCCGCGTTTCATGTGGTAA
CGGAGGCATTTTTGTGTTTCACGCCTCCTGCCCCTCTCTCTCTCTCTTCG
TTTTTTCGCCATGACAAGTTGACCCATGCACGTCACGTGGGGGGTCTTCT
CATATACCCTCAGATGTTGTTGCGCGATTTGCGCCCAACCGAACCGAAGA
GGTTGCACTTGGCACACAAACAACCCGCTTAGAGGGAACCGGCTAGCCGG
TGCACGGAGAGTACCTGCTGCACTGGATGTGCTTGGTCAGGTGCTTGCAG
GAACCGAATTTCAGGAAAAAATGGATCATTATTTTTGGCTGGCGTATTGG
GGTGCACCGAGCCTCATACGGATGGATTCCCAAAACAAATTGTCTCGGTG
TGTATAGCCGATATTTGTCAACGTACTCTTGAGATAAGATACTCTACCGA
ATAATGTAGTGATGAGAAAACAGCACTATACTTAATGATGACATTATTGT
AGACAGTATCGCATATGTCCAATATTGGTGACTCAGGGTAAAATGATATT
CGGATCATATTCTTTTTGACTGAGAAGCAGCCGGGATGTTGGTCAAATAA
AATGAGAACAGAGAAGGATCTACTAATAGGAATGATGCATGTGACATATC
GGGTGGTTAGCATTAGTTAAACAAGTGGATTTTAGTGACCGGGGTATTGC
GGGACGTTACGCGGGACATAGGGAAATAAGATGATACCGTAAGGAGAACA
GGGAGCGTACACCAGTAGCACCACCCATTGCCGCTCACTCCTGTTTTCTC
CCACCCGAGACGCCGATAAGCCTGAGATCCCAGCCTAAGAAGTGAATCTA
GGTGTCTGCAGAGTCGAGTCCCGTATGAGTAGGACTTCTGTTGGACTGAC
CGCGATAGGAGCACCGGTGCTGTATTGGATACTAGTGGGACTTGGGTTTA
CGTTTATATACGAGGAAGGATAACAAAAGGAAGGAAACCGTAAAGAAACC
TTTTGAGTGAAACTATTGCCCAGGACACGCCAAAGATTGTCACGCGTCCG
AGGAAGGAGCCGTGTCACAGAGTCAGAGAAATATCAACATTGTGTTCGTC
GCTTTGTTCTAACAACTTCCTTCAGGACAATTAGTGTACTTGAAATCGTC
TGACTCTCCCCGCGTAAAATTCGTGTTCGGTATTCGTGATGTGTAAGTGG
GATGTGTATGCTGTTGTCATACTGTACAAGAAGAAAGGAGCATGTGTGTC
ACGTACGTTCAAGAGACACGTTTTTTTTGTTTTTTTTTGTGTGTAGTGCT
GATCCACTCGCCCCCAGTAAAGGGTGTGGTCGGCTTGCTGATACACTGGG
GGGAAAACCCAGTACACAAAAAACTTACTCGCTGAGGATTTTTCTGTTGT
GATGCAGGCCCTCAGCAACAACAGTGGTGTTTCTTTTTTTCGGTGCGCCG
GGTAGCCGACCTAGATCATAAAAGTGCTTGATCAGGCATTTTTCGTTTAT
CTCCAGGAGAAGATACTATGTCATTGTTTTCCTTACTATTTCAACGTAAA
GGTCATTTTGGAACACGAACATGGAGAGAAATGCCTCTCCTGCCCGCCCC
GCGAGCGATTTTGATACTGTCTCTCGTCTTATCTTTTTTACCCGAAAGTA
CCCATGCACCGGCCGACGAAACCACTAGTGGGTGAAGCAATCCGCTTGTT
CTTGTTTTTCCTTGAAAAAACACGCCTCCTCACCCGAGTGCCCCCGTTTT
TTATCTAAACCTGAGCTGAAAACTGCTGACTACTAAAAATAGCTATATAC
ACTAAAGCGCCAATCCGGTTAAACGTTTTTCGCGGCATAAAGGACGTTGT
CACAGACAGACAGACAGACACAGACATAGACACACATATACATGCTGTTC
GGACTGCAGTCTGATCAATCGTGATTTGCTCTAAAAAAAAACACTAAACC
TCTTTCCTTTCATTTTTTAAATTTTTTTCCCGCCCGATTAAAACTTTGCC
ACCCTCCGTGCTGCTGTTGTAGGGTTGATTGGAACCTGATGCTGAGCTAC
GACGGCGGGCCGAACCACGCCGGAAACCTGTGCGATAGCCCCATCATCGC
TAACCAGGTATTATCCCTGTACTTATACTGTGGATACATAATGTTTTTAC
TTGTAATACACGGTGTTGTCATACAGCTCGTCAGAAAGATCACTCTGATC
TTGAGCAAGTTTGTTTTCTTGTGTGAGTCCGTCAATTGACTTTCGGAGCC
GTCATAAGCATGACCCTTTAAGTCTTCCAAACGACATCTCCTCCCCTTTA
AGGACGCGCCAATTTAGTTCAAAAGGCTCGAAGTAACGGCTAGGTACTTG
AGTTTTGTGCTATCGCGGGGTGAGAGCAGCCGTCCTGTCCTTCTCATTTG
CTCCTTCACATTACACATCCCCAGAAATCCCAAACAGTTCTATATCCTTA
CTGAATACGCTCAAGTGTTGGTGTAGGTGGTGGTGGTGGTGGATCACTGT
CATTTCGCAATAGTGTTCTACTCTGTACTCTGTGTACTCCAGTATGTTAT
TAACAATGAATCGACACACCCAAATCTTGGAAATTTTGGAACGTTTACGA
GAACTTTGACAGCCAGTAGCAAGTATTACGTGCCGGTTGCAGACAAGCCG
CTGTATACACAACTGGTGGAGAGAGAGAGAGAGAGAGAGCACGGTGTACG
ATCGGCGACGTTATGCATAGGAGTAGACAAGAAGCTTGGGGGGAAGTTTG
TCTCTTTCATCGCCCGAAGCTTTTCCAGAACAAAACGGTATTATCATGCA
GTAAATGTCGAGTGCTGCAGTCGTTGTTCGCACACTGAGAAAAGTATATA
GACGTTAATCACGAAAGTGTTGGGTTAGGTTATATAGTGCTTAGGACCCC
AACCAATCTAAAATGAAAAATTAGGATCATAAGACTCGTTGTTTAGTTTA
TATTATTAATAAAAACTTAAACAAATATATATATAGGGAAGTGAGACATC
TTAGTACCTTGTAGATCAAATCAACCGAGATGTCGTTAGTAGTGGTGAGC
GAAAATGATAAAAATGGTATTATTAGTATAAAAGTAGAATTAACCTTAGA
AGGTGATAGCGCACTATCATGTCAAGTCATTGCCCATGGTTGGATATCCT
CTCTGTGCTGAAAGTGTCTGTCTGAAACGTGGCGGCTTCATATCCTCGTA
ATGGTGTCCAACCATAGGCGGCGGCGATTTTCACCGTTGTTGAAGTAGGG
GTTCGATGATGGAGATTAGAGGTGATCGAGTGCCAAAAGCGGGTGAAATT
TTGGGGTACCGGGGCGTGAGGTGTATGCACAATTACCTGCACTATGTATG
CAGTCCGTTTATGGTTTTTATGTATGTCGCGTGTTTTTTTTTTCGATATC
ACCGACCATTTCAATTCTCATGAATCATCAGATTGTGAACAACCTACCCT
GTACTATACAGTGCGTTTATGGTTTCATGTATGCCGTATGTTTTTTTTTT
TCATATATCCCACCGTCTTAGTTGTGTCACTACTCGTCACCTGACGCGGG
TTTGTTTGTCACCCAGTTGGTCATTCAACGACCATTATATATGCATGGTT
GATTGTGTGTGTATTTATTTATCCAACATGCGTGATCGTTTTTTTTTTCT
CAGTATGTGACGTCCAGCCCAACAAGGTTGGTTACATACACCCAAGCCTT
CTTTTTCAAGACTGCACCAACGTGCAACCGCCGCGCTGTTTTCAACGCAG
CAGGAGCAACGCAATGGCGGCCCTTGGCTCCAGCCGGACGGCAGTAGGTC
TCTTACGTTAAAAGGGAAACGTTACGTAATACAATATTTCCTTTTCTCCT
GCTACAACGCTAAGCGCAACTCGCTTTCAATATAAGCACAGGGTCTCACA
CGTGCCAGCATAGTGCCATGTAGGTCGTGGGTTGCAAGTTGCAAGTACAT
GCGATTTGGCCGATCTCCCTGGGGGATGGGTTGCATGCATGAATGCGGTG
ATAAACGAACCCCCGACAGCTGTGGTATCTACTAGTATAGAGCGACACGG
AAACCTCCTATCCACCCCAAATCGCCTGCTGTGGGATTACACTTGCATTG
CAGAACCACACGGACGTGATATTCCAACCGATGTTCTACTACATGGGTCA
TTTCTCCAAGTTTGCCAAGGCGGGGGCCCATCGCCTCAAAAGTCACGTGA
CTGGCCACTACGAACGCGGCGGGGGGCGCCCCTCGAGCGTCATGCCTGGT
ACGTGCATGGGATGTTCGTTGTTGTTATTATTATCCAATTGTTGTTATTG
TTGTTGTTTTCACGCGCAAGTACAACTGTGGAAAGCCATGCGCAGTAACT
GCATCTCGAAGATGCAGAGCTTTAGGCTCCTTCGAGAATAAAATATGTAA
ATGTGCATCAATATATGGGAGCAATTAACCCTGTAATTTTACGATCCATG
CCCACCCCCAAAAAACGATATAATGCATGATCGGTCGCTATTGCCTTATT
TCGTGTCTAGTTCTTGTTTCGTCGTGTGTCTCTTTTTCTCGTGTCTAGTT
CCTCCTGTCGTGTGTATTGTATATGTGTGTGTATGTGTGTGTTTTGTCTG
TTGGTAGCTTAATATCAAAGCACAACATCACCATTCAGTTAACGTTTAAA
CGAATCAAAATAATTGCAATTCAATCGGTAAGTATCGCATAACCGTTTTT
TTTTTTCGGTGGCGGGGGGCTCAGCTAAAATGCTCACTCGTTTTGTATAA
TTCGTTTCGTGTAACTGGTTTGGCTTTTCAGGTTTCGAGGCGACCGTTTA
TGGATGCGAAGGCAGTGTGCGGCAGAACTGGGAAATGTCGGCAACGGGAA
AATTGGCACTCGCAGACTACTATGGCGCCGTGTACGACGGATATTTACCC
ATGTGCCTATCCGGGTCTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig9307:163..7033+

>mRNA_H-paniculata_contig9307.17089.1 ID=mRNA_H-paniculata_contig9307.17089.1|Name=mRNA_H-paniculata_contig9307.17089.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig9307:163..7033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGCGACGAAGAGACTTCCCAGTACGTGGACGGCATGGCCTTCCA
TTGGTACTGGGGCGGCGGAGAGCGAGCACTCGACGGAAGCGTCGGCTGGG
GTGTCCTGAACAGATGCTGCGCGACGAAGAGACTTCCCAGTACGTGGACG
GCATGGCCTTCCATTGGTACTGGGGCGGCGGAGAGCGAGCACTCGACGGA
AGCGTCGGCTGGGGTGTCCTGAACAGGACATACCATGCGTTGCAGGAGAG
TGATCACGACAAGTTCATCCTGTCGAGTGAAAGCTGTAATTGCCCCTTCG
TCGACCACTCGCTGGAGGGTGGCTGGAACAGGGCGGAGCACATGGCGCAC
GATATCATAGCCGACCTCAACAGCTGGTCCTCCGCCTGGACATACCATGC
GTTGCAGGAGAGTGATCACGACAAGTTCATCCTGTCGAGTGAAAGCTGTA
ATTGCCCCTTCGTCGACCACTCGCTGGAGGGTGGCTGGAACAGGGCGGAG
CACATGGCGCACGATATCATAGCCGACCTCAACAGCTGGTCCTCCGCCTG
GGTTGATTGGAACCTGATGCTGAGCTACGACGGCGGGCCGAACCACGCCG
GAAACCTGTGCGATAGCCCCATCATCGCTAACCAGGGTTGATTGGAACCT
GATGCTGAGCTACGACGGCGGGCCGAACCACGCCGGAAACCTGTGCGATA
GCCCCATCATCGCTAACCAGAACCACACGGACGTGATATTCCAACCGATG
TTCTACTACATGGGTCATTTCTCCAAGTTTGCCAAGGCGGGGGCCCATCG
CCTCAAAAGTCACGTGACTGGCCACTACGAACGCGGCGGGGGGCGCCCCT
CGAGCGTCATGCCTGAACCACACGGACGTGATATTCCAACCGATGTTCTA
CTACATGGGTCATTTCTCCAAGTTTGCCAAGGCGGGGGCCCATCGCCTCA
AAAGTCACGTGACTGGCCACTACGAACGCGGCGGGGGGCGCCCCTCGAGC
GTCATGCCTGGTTTCGAGGCGACCGTTTATGGATGCGAAGGCAGTGTGCG
GCAGAACTGGGAAATGTCGGCAACGGGAAAATTGGCACTCGCAGACTACT
ATGGCGCCGTGTACGACGGATATTTACCCATGTGCCTATCCGGGTCTGTT
GTTTCGAGGCGACCGTTTATGGATGCGAAGGCAGTGTGCGGCAGAACTGG
GAAATGTCGGCAACGGGAAAATTGGCACTCGCAGACTACTATGGCGCCGT
GTACGACGGATATTTACCCATGTGCCTATCCGGGTCTGTT
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