Homology
BLAST of mRNA_H-paniculata_contig93.17077.1 vs. uniprot
Match:
D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI)
HSP 1 Score: 120 bits (302), Expect = 3.200e-29
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 1
Query: 1 VQEKRKVCPTCEVEYRKPRTWTGVRKEFLKRLEKCEKSKQAALGAAIAKQEQEQEFITRSVTPTSQRWHE----DGVFWEDVEDDFMSRLQEDALRRQISLQSRSKSLHPDCTFRTKVSRASERFVEKSSWSGAHQAIIMTDAAYPA 429
V+EKRK+C CE EYRKP+TW VRK+FL R+E ++SK+ A+ AA + R+ S R ++ + +FWED+EDDF+ RLQEDA RRQ SL+SRS +L+ D TFR +S ASER V++S+W+G+ ++ T PA
Sbjct: 383 VEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAVQAATQSR-------MRTFALGSHRSYDGAERERLFWEDIEDDFVYRLQEDAARRQESLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPA 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig93.17077.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 3.20e-29 / Id = 46.94 Sequence D8LTK2_ECTSI
Match Name E-value Identity Description
D8LTK2_ECTSI 3.200e-29 46.94 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 124.8 Seed ortholog evalue 3.3e-26 Seed eggNOG ortholog 2880.D8LTK2 Hectar predicted targeting category other localisation EggNOG OGs 2AZKF@1,2RZZN@2759 Ec32 ortholog description conserved unknown protein Ec32 ortholog Ec-28_003770.1 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 4 Model size 429 Cds size 429 Stop 0 Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig93.17077.1
>prot_H-paniculata_contig93.17077.1 ID=prot_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
VQEKRKVCPTCEVEYRKPRTWTGVRKEFLKRLEKCEKSKQAALGAAIAKQ back to top mRNA from alignment at H-paniculata_contig93:38664..41895-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig93.17077.1 ID=mRNA_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3232bp|location=Sequence derived from alignment at H-paniculata_contig93:38664..41895- (Halopteris paniculata Hal_grac_a_UBK monoicous)GTTCAAGAAAAACGCAAGGTTTGTCCAACCTGTGAAGTGGAATACCGAAA
GCCGAGGACCTGGACAGGCGTAAGAAAG GTGAAAGGCGCACGGTGACTGC
CAAACTTGGTTAGTCGAGGGACGTGTGGCTGTGCGACTACGGTTGTAGTT
TGCTCCAGCAGTATTCCCAACGAGGGCGACTTATCAATGCTAAGCGGCAC
ATCTTGTATGTGACAATATGACGTAGTGAAGGTCTGTTACCCCTCAAGAT
GCCTATATCTCGCTGTCGCTGGTGGTGAGCGATTTGGGATAAAACTTGTC
ACTCATCGGAACAACCGTAGCACACGAAACCCCATAAGGCTGTTCATATT
CCCTAGTATATTGTCATACTCCATTAGCAATTTCTCAGCTATTTACTTCC
GGCAACAGCAATCATCGTGTATGCCATCTCTCCCTTAATATTCGGGCGTC
ATTGGCAGGAGTTCCTGAAGCGACTGGAAAAGTGCGAAAAGTCAAAGCAG
GCAGCGCTCGGCGCCGCCATCGCCAAGCAAGAGCAAGAGCAAGAG GTATA
TTAGAGGATCCAAACTATTTTGACTGCAATATTACATAGGACGCATTCTA
GCAATTGTTCGGCGAGTCGATCCGCACCCGCGACGTTTCAGCGTCACCAG
GCGCCTTTAGGATTTGAAGTTGTGTGGGGTCTGAGAACGGACACCTCCTC
GTGGCGGCCGTTCAATAGTCAGAGTGAAAGTGAAATATAACGTGTTTTAA
GGCACGCAAAAGTCACACGTAAGCAGGAAACTCCCGCTTGGGATCGCTTT
CCCTCCCATTAGGCGACATAAACACGAGCCACTTACTATTGCAGTCATGC
TTCCATGCGCTTCCTGTTGAACGCCTATTTTTTTGGGACGTCCTCGATTT
TAGAGTGGTCCTTTTGTCAGTGCTCCATCGCCATTCTCCAGACCCTGATC
GACCGCAATGGATGAAGTAGATGAGAAGCTAATCCTCTCTTGTCCGCTGC
TCAATGCTTTTCCCTTCACCCGCTCTTTCTCTCTCTGCGGAAGAGAGGGA
AATGCGGTCAACATACGGAGAGACATAGCTGTTGAATGGTTTTCCCTCAA
TCTCTCTCTTTCTTTCTTTGCCAAGGATAGGAAAATGGGGCCGCATTTTG
AGGGGCATATGCACCCTGCTTCAAGACCGGAGTAATTATCTTTCAGACTC
GATCCTTACGACACCTATCGATTAGTCAATAGATACCTCTGACATTATTG
AAGTTGCCGCCGGCACCCCGTAAACATCGCCGACGCTCTTCCACCCCCGG
AAAGTGTCGGCGAAATATTCGCCGACGCTTCGGAAATTTCGCGGGCACGC
TCAAAAGTGTCGGTCACACCTGAGACAGTGTCGGTCACACCCCGGAATGA
GGATTCCGAAATTATCAGGGACACTTTCGGAAGTATTGCCGACCCTTTCG
ATATGCTGCCGATACCTCCTGAAGCGTAAAAAGAAACGTCGCCGACACCT
CCAAACTGTCCTTTCTGCTTCCAAATGCGTCAGCCACAGTTCTGATCATT
CCGGAACTGTTCGACACATTGGCAACTGCCGCCGACACCTGAGAGAGTTT
TCACCGGATGTGCCGGGAAACGCACGTCGCCCCTTCTACCGACCGCTCTG
TTGGACTGAAAACCTAGGGCGATGAAAATACATCCTTTTTTCCTGACACA
TGATCGTGCAGATACACGAACCAGCGATCTCATGAGTTTGCTGACAGCCG
TACATCGGAGTTCGTTCGTGACACTCCGTGGATCGCGATTACACCATGCT
AGGGTCATACTCCAAAATCGACGAAAATGACCTATTCTGGTGTTCGGTTG
ACGAAATAGACGCTCAACCACGTTGTTTTGTAGTAACTATACTCTTGTTT
CGTGCTCGAGCGATTGCTTCGCCGGCCAGTTTATAACTCGGTCCGTCACT
CCAACATCGCAGAGATGGCATGAAGACGGTGTGTTCTGGGAGGACGTGGA
AGATGACTTCATGAGCAG GTGAGCTAAAATAGCGTAGGTTTTATTGTAGA
CAGGGCTTTGGTTTCTTTTACATGATGTACTAATATATGATTCTATGAAG
AATCCGCAGAAATATCACATAAGTCAAGGTAGGACCAATATTAAGCTCAT
GCAGCTCGTGGTTGGTCCTCAATTCATGAACTTGCTGCACTTGCAAGTGG
CTCCTTGCACCCGCATAAAGATTCGTTCTTCAGGATTTACTTGAATACAA
ATTTGAATATATATTCCGGAATCCGGAATGACGACGACCTCAGCTCTATC
GTACTAAATTACAGGTACTCAATGTAAAGCTTATAGCTTAGTACGACCTC
CCCTGTTTCACCATGGTAGTGGCCGCCAAAGTCTGCTACACGTTTCGTGC
GAAATGCAGCCAAAAACTATTTGACTCCCCGCAGGTGCCCTATCAGACCG
AGGTTACGTCCTCCGTCCAAAGTCCTGTCCTATTAAGGTTTCGGTACTAA
AATCTTCTGTAATTTTGAGGTATATCAAACTCCGAGCATACCGTTCGACC
GTTCAAAGATTCAGCTTGCACAATCTGCTGTACTTGCCCCTCTTTTTTTC
CCGTAAGAACATCGTGTTGAGAAGAAAAAGTAAAAAAAATGTAATAAAAA
AACTATTTTGAAGATATCTATACGCGAGCCGACATCGTTATCTTTGCAGC
AGCTTCGACGCGCACATTTTGATGGAGCTCAATTTTGCAACATATGGAAA
ACGTTTTGGCCGATTTTACTGTCGTTGCAATATGTGTCATACAGAAAAAT
AGAATGTGGTTCGAGTATATGTTCTCAACCATTTCTACTTGAAGAATATT
ATGGAGCCGATCGTATACAGGTCGACGTTGTGGGCTTGTCGGACATTGTG
CTCGGAGCTTGATGATTCTCAAGATTACACACACACACACACACACATAC
ATATATATATAAACTACAGCAGGACAGACTTATGGGATGGGGAGAGTTTG
TACTTCCTCACCTATTTTTGTCGTATCTGATTCGCGCATCAAACGATGTG
ACCACAGGTTGCAAGAGGACGCGTTGCGAAGACAAATTTCTCTTCAATCT
CGCTCCAAGTCGCTACATCCAGATTGTACCTTCCGGACCAAGGTCAGCCG
TGCGAGCGAACGATTCGTCGAAAAGAGTTCTTGGTCAGGTGCGCACCAAG
CGATAATAATGACTGACGCAGCCTACCCGGCC back to top Coding sequence (CDS) from alignment at H-paniculata_contig93:38664..41895-
>mRNA_H-paniculata_contig93.17077.1 ID=mRNA_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig93:38664..41895- (Halopteris paniculata Hal_grac_a_UBK monoicous) back to top