mRNA_H-paniculata_contig9293.17075.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9293.17075.1
Unique NamemRNA_H-paniculata_contig9293.17075.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.960e-35
Identity = 81/102 (79.41%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTD+ ++ LD+AMELFQAADQFGVERLK++CES MLASINVENAA  XXXXXXXXXXXXXXX  NF+L NFD VTK+A FEEMGRTN+ELVFEIL+ R
Sbjct:  146 LEYLYTDQCEIPLDIAMELFQAADQFGVERLKKICESKMLASINVENAATIXXXXXXXXXXXXXXXCLNFVLANFDPVTKSASFEEMGRTNVELVFEILQKR 247
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: F0Y4D1_AURAN (BTB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D1_AURAN)

HSP 1 Score: 134 bits (337), Expect = 3.750e-35
Identity = 87/102 (85.29%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTD VD+ LD+AMELFQAADQFGVERLKRMCES MLASI+VENAA XXXXXXXXXXXXXXXXX NFIL NFDAVT+TA FEEMGR N+ELVFEIL++R
Sbjct:  378 LEYLYTDNVDIALDIAMELFQAADQFGVERLKRMCESKMLASIHVENAATXXXXXXXXXXXXXXXXXLNFILTNFDAVTRTASFEEMGRVNVELVFEILKSR 479
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S2XZ71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ71_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.040e-35
Identity = 86/102 (84.31%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTDE+ + LD+AMELFQAADQFGVERLK+MCE  MLASI++ENAAXXXXXXXXXXXXXXXXXX NFIL NFDAVTKT DFEEMGRT+I+LVFEILR R
Sbjct:  287 LEYLYTDEITIPLDIAMELFQAADQFGVERLKKMCEGKMLASISIENAAXXXXXXXXXXXXXXXXXXLNFILANFDAVTKTPDFEEMGRTSIDLVFEILRQR 388
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S2C711_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C711_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.440e-34
Identity = 66/102 (64.71%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTD+V+V LD+AMELFQ AD FGVERLK++CE  MLASINV+NAA                   NFIL NFD VTKTA FEEMGRTN+ELVFEIL+ R
Sbjct:  119 LEYLYTDQVNVPLDIAMELFQTADHFGVERLKKICEYKMLASINVDNAASIFHAADLHNAKSLREKCLNFILANFDPVTKTACFEEMGRTNVELVFEILQKR 220
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S4A3I8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3I8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.900e-32
Identity = 82/102 (80.39%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTD+V+V+LD+AMELFQAADQFGVERLKRMCES ML SI+VENAA XXXXXXXXXXXXXXXXX  F+L NFDAVT+T+ FEEMGR N++LVFEIL+ R
Sbjct:  418 LEYLYTDDVEVDLDMAMELFQAADQFGVERLKRMCESRMLGSIHVENAATXXXXXXXXXXXXXXXXXLAFVLANFDAVTRTSAFEEMGRVNVDLVFEILKAR 519
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S2GCG7_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GCG7_9DINO)

HSP 1 Score: 116 bits (291), Expect = 8.620e-31
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTDEV+V +D+AM+LF AADQFGVERLKR+CE  +L SIN+++ A                   +FIL NFDAV+KT  FEEMGR+N+ELVFE+L+ R
Sbjct:   90 LEYLYTDEVEVSMDIAMDLFVAADQFGVERLKRLCEKKILVSINIDSVATILQAANMHIAHGLRQSCMDFILRNFDAVSKTPAFEEMGRSNVELVFEVLKRR 191
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A2P4X727_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X727_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.050e-30
Identity = 59/102 (57.84%), Postives = 70/102 (68.63%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            +EYLYTD +DV +D AMELF  AD++GVERLKR+CES ML S+ VENAA                    F+L NFDAVTKT  FEEMGRTN+ELVFE+L+ R
Sbjct:   23 MEYLYTDYLDVAVDFAMELFVTADRYGVERLKRICESKMLGSLCVENAASIFHAADLHNATVLRDQCITFMLNNFDAVTKTDAFEEMGRTNVELVFELLKRR 124
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S4RUG7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RUG7_9DINO)

HSP 1 Score: 117 bits (294), Expect = 6.640e-29
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTDEV+V +D+AM+LF AADQFGVERLKR+CE  +L SINV++AA                   +FIL NFDAV+KT  FEEMGR+N+ELVFE+L+ R
Sbjct:  408 LEYLYTDEVEVGMDIAMDLFVAADQFGVERLKRLCEKKILVSINVDSAATILQAANMHIAHGLRQSCMDFILRNFDAVSKTPAFEEMGRSNVELVFEVLKRR 509
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BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A7S1SDQ4_ALECA (Hypothetical protein n=3 Tax=Alveolata TaxID=33630 RepID=A0A7S1SDQ4_ALECA)

HSP 1 Score: 115 bits (289), Expect = 9.910e-29
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTDEV++ LD+AM+LF AADQFGVERLKR+CE  +L SINV++A                    +FIL NFDAV+KT  FEEMGR+N+ELVFE+L+ R
Sbjct:  289 LEYLYTDEVEIGLDIAMDLFIAADQFGVERLKRLCEKKILVSINVDSAPTILQAANMHIAHGLRQSCMDFILRNFDAVSKTPAFEEMGRSNVELVFEVLKRR 390
[Close]
BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Match: A0A0G4FIC0_VITBC (BTB domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FIC0_VITBC)

HSP 1 Score: 117 bits (293), Expect = 9.910e-29
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAXXXXXXXXXXXXXXXXXXXNFILGNFDAVTKTADFEEMGRTNIELVFEILRNR 306
            LEYLYTDE+D+ LD+AM+LF AADQFGVERLK++CE  +L SI+++NAA                   +FIL NFDAV+KT  FEEMGR N+ELVFEIL+ R
Sbjct:  419 LEYLYTDELDISLDMAMDLFVAADQFGVERLKKLCERKILTSIDIDNAATILQAADLHTAVSLRQSCFDFILRNFDAVSKTQSFEEMGRANVELVFEILKRR 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9293.17075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BYV7_9STRA1.960e-3579.41Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y4D1_AURAN3.750e-3585.29BTB domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2XZ71_9STRA5.040e-3584.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2C711_9STRA4.440e-3464.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4A3I8_9STRA7.900e-3280.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GCG7_9DINO8.620e-3156.86Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A2P4X727_9STRA3.050e-3057.84Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A7S4RUG7_9DINO6.640e-2958.82Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1SDQ4_ALECA9.910e-2957.84Hypothetical protein n=3 Tax=Alveolata TaxID=33630... [more]
A0A0G4FIC0_VITBC9.910e-2957.84BTB domain-containing protein n=2 Tax=Vitrella bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9293contigH-paniculata_contig9293:2263..4050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue7.8e-30
Seed eggNOG ortholog44056.XP_009034935.1
Preferred namelztr1
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGs2CMFB@1,2QQ74@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons3
Model size309
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9293.17075.1prot_H-paniculata_contig9293.17075.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9293 2263..4050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931156.3120694-CDS-H-paniculata_contig9293:2262..22861622931156.3120694-CDS-H-paniculata_contig9293:2262..2286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 2263..2286 +
1691481615.8257763-CDS-H-paniculata_contig9293:2262..22861691481615.8257763-CDS-H-paniculata_contig9293:2262..2286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 2263..2286 +
1622931156.335454-CDS-H-paniculata_contig9293:3262..34211622931156.335454-CDS-H-paniculata_contig9293:3262..3421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 3263..3421 +
1691481615.837443-CDS-H-paniculata_contig9293:3262..34211691481615.837443-CDS-H-paniculata_contig9293:3262..3421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 3263..3421 +
1622931156.3779912-CDS-H-paniculata_contig9293:3924..40501622931156.3779912-CDS-H-paniculata_contig9293:3924..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 3925..4050 +
1691481615.8474772-CDS-H-paniculata_contig9293:3924..40501691481615.8474772-CDS-H-paniculata_contig9293:3924..4050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9293 3925..4050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9293.17075.1

>prot_H-paniculata_contig9293.17075.1 ID=prot_H-paniculata_contig9293.17075.1|Name=mRNA_H-paniculata_contig9293.17075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
LEYLYTDEVDVELDVAMELFQAADQFGVERLKRMCESTMLASINVENAAS
IFHAADERSAKSLREKCLNFILGNFDAVTKTADFEEMGRTNIELVFEILR
NR*
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mRNA from alignment at H-paniculata_contig9293:2263..4050+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9293.17075.1 ID=mRNA_H-paniculata_contig9293.17075.1|Name=mRNA_H-paniculata_contig9293.17075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1788bp|location=Sequence derived from alignment at H-paniculata_contig9293:2263..4050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGTACCTGTACACAGATGAGGTTCGTTGGCGGCGGCGGTGGCGGTG
GCGGTGGCAGTTGACCGCCAGGGGGTGTACCGGAGGGGTGCTGCATTACA
TGAGAACGGCATTAGTTTCTTGCATGATATTTGCTCTTTCGTGTCCTTAA
TGTCCTTTCAGCATTGCGTTGTGTTGATGTTTGGTTTTTTGGAAAAGTGT
GTTACCCTTGTTCCAACATATTTTGATTATGTTTTTGGTATGTAAAAGAG
ATGAAGAGTATTTCACGTATGGTATACATCAATATCGGCACGAGTTGGCT
CGTCTAAATGGGCGGTGGACAAAGGGGTGCTGCCTATCAGTAGGATACCG
ATCAAAGGTAGAAATTATGTATTGATGACCGATAATACAATCCGTCGGTG
CAAGATAAGCGGTGCGAGCTGTGAACGATCTGATCGTCTCGATGAGCCTT
GTAAGGTACCGATCCCAGTGTATCATCAAATGACTTGATCGGTTTGGACC
GTTCAATATCGGTGGTTGCAGGCTCGTTTCAATCAGACATGCACAAACGT
GTGCTGACAATCCTGTGCTAGCGAACGGTAGGGTACCAATCATAGATGGA
ATCAATGTATGGATCATACTGCTCATACCGGTAGCGCGATCTATCGGCGC
GTGAGAGCGGTTACGAACTATAAACAATCTGATCCGTGTTCTAGCCGTTA
AATATTTCGAGAAGAATATATACTTTTCGGATATGTTGTGTCCAAATGAA
CGGACTGTTGGGTTGCTGTGCTTTTTTTTTTAATATATATATTTCATCGA
TCAAGCAACGTATGTATTCGAATATTTGTTGGTGTCCCTTAATAGTAGGT
GGAATCGTAAATACATTTCAAGATCCAAAGATTCGAAAATGTGTATTAGA
AAAAAAAATGTGTATTTAAAAGAAAAGTAAAAGAAAAAAAGTATATAAAA
ATTCAACACGTTCATATTTCTGTATATGAATTGACACGCGAATGGAATAG
GTGGACGTAGAGCTGGATGTTGCGATGGAGCTGTTCCAGGCGGCTGACCA
GTTCGGGGTAGAGCGGCTAAAGCGCATGTGCGAAAGCACGATGCTCGCTT
CAATCAATGTGGAGAACGCAGCCAGCATTTTCCACGCGGCAGATGAGCGC
AGCGCCAAGGTACGACGAAAGTGACATAAAAAAAACACATGGACAAAAAT
ATGTCTTTGAAAAGAACAGCGGACACGCACACATTCATATGAGCCAATAA
TGTTATTTTTAGCGCTGGTAATTCAATTAGCGGTGGAATATTATCCCTTT
ATATACCATTGTTGGTTACGAGTAAGAAATGGAGGAGTATAAAAGCGAAC
AGGATTGTATTGTCTTTGTGTTCGATCTGTGTGTGCATAGAGTTAAAAAA
AAAAAAAAATCCGATTTCGCACCAGCCTCCACACACCTAAAAAGACCGAC
CAATTATTCTGTAGCTTTTTTATTTTTCGTTTTCGCGTTCTTTTTTGTTT
TTAGCATCTTTACGCTTCATCATTTTTAAATGTGAGAAAAAAGAAGGAAA
AAAACAGCTCAAGACATCCCGGGAATTTCTCCCCACTTGACTCCTTCCGG
TCTGCCGCTCGTCTCGATGTTGCGCTGTTTTCCGTATCACACACGCACAC
TTGGTGTACCAGTCTTTGCGGGAGAAATGCCTCAACTTTATCTTGGGTAA
TTTCGATGCTGTTACGAAGACCGCTGACTTTGAGGAGATGGGAAGGACGA
ATATCGAATTGGTTTTCGAGATCCTGCGGAACCGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9293:2263..4050+

>mRNA_H-paniculata_contig9293.17075.1 ID=mRNA_H-paniculata_contig9293.17075.1|Name=mRNA_H-paniculata_contig9293.17075.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig9293:2263..4050+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGTACCTGTACACAGATGAGTTGGAGTACCTGTACACAGATGAGGT
GGACGTAGAGCTGGATGTTGCGATGGAGCTGTTCCAGGCGGCTGACCAGT
TCGGGGTAGAGCGGCTAAAGCGCATGTGCGAAAGCACGATGCTCGCTTCA
ATCAATGTGGAGAACGCAGCCAGCATTTTCCACGCGGCAGATGAGCGCAG
CGCCAAGGTGGACGTAGAGCTGGATGTTGCGATGGAGCTGTTCCAGGCGG
CTGACCAGTTCGGGGTAGAGCGGCTAAAGCGCATGTGCGAAAGCACGATG
CTCGCTTCAATCAATGTGGAGAACGCAGCCAGCATTTTCCACGCGGCAGA
TGAGCGCAGCGCCAAGTCTTTGCGGGAGAAATGCCTCAACTTTATCTTGG
GTAATTTCGATGCTGTTACGAAGACCGCTGACTTTGAGGAGATGGGAAGG
ACGAATATCGAATTGGTTTTCGAGATCCTGCGGAACCGATGATCTTTGCG
GGAGAAATGCCTCAACTTTATCTTGGGTAATTTCGATGCTGTTACGAAGA
CCGCTGACTTTGAGGAGATGGGAAGGACGAATATCGAATTGGTTTTCGAG
ATCCTGCGGAACCGATGA
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