mRNA_H-paniculata_contig9290.17074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI) HSP 1 Score: 168 bits (426), Expect = 2.990e-48 Identity = 87/161 (54.04%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
VN+A+++D SGS+ + DW L KEFA+N V +FA +NLF NGG+AS+ QF+S GTF + + F F D DV+ GGTDI G+ + R+L++A +FMIV TDG DP EADAARAEGTI++AVGVG+ S LLAIGGDE+NVF++ +F+ELD
Sbjct: 74 VNVAVIIDASGSVGTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFASDASEGGTFYSLEDFNAFVDADVKHSGGTDIIDGIAKGRELLSASPAATSFMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELD 234
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.670e-46 Identity = 88/161 (54.66%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
VN+A+++D SGS+ + DW L KEFA+N V +FA +NLF NGG+AS+ QFSSS GTF + + F F D D + GGTDI G+ + R+L++A +FMIV TDG DP EADAARAEGTI++AVGVG+ S LLAIGGDE+NVF++ +F+ELD
Sbjct: 91 VNVAVIIDASGSVSTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFSSSASEGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPAATSFMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELD 251
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.480e-44 Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 1
Query: 1 QVNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQG---GGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
QVN+A+++D SGS+ + DW L EFA+N V +FA +NLF NGG+AS+ QFSSS GTF + + F F D + + GG T+I G+ + R+L+ A T ++MIV TDG P EADAARAEGTI++AVGVG+ + TLLAIGGDE+NVF++ +F+ELD
Sbjct: 107 QVNVAVIIDSSGSVSTADWELSMEFAKNTVASFAEQNLFTNGGSASFAQFSSSASEGGTFYSLEDFDAFVDAETKYATFGGSTNIISGIAKGRELLGASPTTTSYMIVTTDGEADSPQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEELD 271
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 165 bits (418), Expect = 2.810e-44 Identity = 87/161 (54.04%), Postives = 116/161 (72.05%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
VN+A+++D S S+ + DW L KEFA+N V +FA++NLF NGG+AS+ QFSS GTF + + F F D D + GGTDI G+ + R+L++A T +FMIV TDG DP EADAARAEGTI++AVGVG+ S LLAIGGDE+NVF++ +F+ELD
Sbjct: 81 VNVAVIIDASVSVGTADWELSKEFAKNTVASFAQQNLFTNGGSASFAQFSSDASEGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPTTTSFMIVTTDGVAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEELD 241
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI) HSP 1 Score: 152 bits (384), Expect = 5.080e-42 Identity = 83/162 (51.23%), Postives = 110/162 (67.90%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQ-GGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
VN+A+++D SGS+ +W + FA++AV +FA +NLF NGG+AS QFSSS GTF + + F F DG+ + GGTDI G+ + R+L+ A T +FMIV TDG P EADAAR EGTIV+AVGVGT + LL IGG+E+NVF++ FDELD
Sbjct: 60 VNVAVIIDSSGSVDDDEWDMSMAFAKDAVSSFADQNLFTNGGSASIAQFSSSASEGGTFYSLEDFNAFVDGNTKYSSGGTDIIDGIAKGRELLKASPATTSFMIVTTDGQSSSPKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDELD 221
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 155 bits (393), Expect = 6.330e-41 Identity = 86/164 (52.44%), Postives = 114/164 (69.51%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNG-GDPAPEADAARAEGTI-VFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELDS 489
VN+ IV+DGSGSIVS DWILE++FA++ V AFARRN+F NGGTASYVQFS+S GTF + + F D +Q GG TDI G+ R L+N + +FM++ITDG DP+ A RA+ T +FAVGVG+++ST TLL I G+ESNVF + +F L++
Sbjct: 50 VNVVIVVDGSGSIVSSDWILEQQFAKDTVAAFARRNIFDNGGTASYVQFSTSTYDEGTFTSTESFDEHVDSVIQWGGDTDIADGIIAGRALLNENPASFSFMVLITDGESYTDPSTAAQETRADNTTTIFAVGVGSQISTETLLDIAGEESNVFSVTNFSSLEA 213
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 153 bits (387), Expect = 2.110e-40 Identity = 85/162 (52.47%), Postives = 111/162 (68.52%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQ-GGGGTDIEVGVREARDLINAQDGTAAFMIVITDGNGGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELD 486
VN+A+++D SGS+ S +W + FA+NAV +FA +NLF NGG+AS QFS+S GTF + + F F DG + GT+I G+ + R+L+NA T +FMIVITDG P EADAARAEGTIV+AVGVG+ + S LL I GD+SN F + DFDELD
Sbjct: 60 VNVAVIIDSSGSVNSDEWDMSIAFAKNAVSSFADQNLFTNGGSASIAQFSNSASEGGTFYSLEDFNDFVDGSTKYQSQGTNIIAGIAKGRELLNASPTTTSFMIVITDGQSSSPKDEADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDELD 221
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.670e-38 Identity = 86/169 (50.89%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 1 QVNLAIVLDGSGSI--VSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVREARDLI-NAQDGTAAFMIVITDGN---GGDPAPEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELDS 489
+VN+A+++D SGSI + G ++LEKEFA+N +FA +NLF NGGTASY FS + GTF ++ F F D G T+IE G+ + R+L+ N +F+I+ITDG+ GGDP EADAAR EGTIV+AVGVG +VS +TLL+IGGD +NVF+ +F ELD+
Sbjct: 66 KVNVAVIIDSSGSIFDIDGAFLLEKEFAKNVAASFAAKNLFTNGGTASYASFSDAASDGGTFGSEAEFNEFVDNASWIEGDTNIEAGLSKGRELLANGTSTRTSFLILITDGDWNRGGDPQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTELDN 234
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: UPI0015FF590C (uncharacterized protein LOC118404903 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FF590C) HSP 1 Score: 69.3 bits (168), Expect = 1.130e-10 Identity = 59/168 (35.12%), Postives = 82/168 (48.81%), Query Frame = 1
Query: 4 VNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVRE-ARDLINAQDGTAA----FMIVITDGNGGDPAPE-ADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDFDELDS 489
++L +LDGSGS+ ++ L K+F +N V F + + G Y + T+D + D GGT+ ++ A D A G F+IV+TDG D + AD R G VFAVGVGT+V TLLAI D VF+IGDF+ L+S
Sbjct: 253 IDLMFLLDGSGSVTKTNFDLVKQFVKNIVQNFDIQPGTTHVGVLQYSTTVKEHFALNTYDRSAQVLSAIDRIQYMQGGTNTGAALQYLAHDSFTAAKGGHPNHQNFVIVVTDGKSSDSVMQPADELRKMGVKVFAVGVGTQVDNDTLLAIATDPKKVFQIGDFEGLNS 420
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Match: A0A8J9YT76_BRALA (COL6A3 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YT76_BRALA) HSP 1 Score: 68.2 bits (165), Expect = 2.890e-10 Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query: 7 NLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFSSSVISSGTFDTQDGFRTFSDGDVQGGGGTDIEVGVR-EARDLINAQDGTAA----FMIVITDGNGGDP-APEADAARAEGTIVFAVGVGTEVSTSTLLAIGGDESNVFEIGDF 474
+LA++LDGSGS+ + ++ L K+FA+ V F G Y S+ F T+ DG V GGT+ + +++ + +G A ++V+TDG D A A +AR EGT+++AVGVG V+ +TLL I G + V + DF
Sbjct: 5193 DLALLLDGSGSVGADNFNLVKQFAKRLVDNFEISQTDNKVGVVQYSSSSNVEFYLNAFSTKQPVLDAIDGIVYQQGGTNTGAAITFTMQEIFASANGARANYPDILVVVTDGESSDDVAAPALSARNEGTLIYAVGVGNGVNQATLLQIAGSAAQVLQAADF 5354 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9290.17074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9290.17074.1 >prot_H-paniculata_contig9290.17074.1 ID=prot_H-paniculata_contig9290.17074.1|Name=mRNA_H-paniculata_contig9290.17074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp QVNLAIVLDGSGSIVSGDWILEKEFAQNAVGAFARRNLFGNGGTASYVQFback to top mRNA from alignment at H-paniculata_contig9290:165..1744- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9290.17074.1 ID=mRNA_H-paniculata_contig9290.17074.1|Name=mRNA_H-paniculata_contig9290.17074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1580bp|location=Sequence derived from alignment at H-paniculata_contig9290:165..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9290:165..1744- >mRNA_H-paniculata_contig9290.17074.1 ID=mRNA_H-paniculata_contig9290.17074.1|Name=mRNA_H-paniculata_contig9290.17074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig9290:165..1744- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |