mRNA_H-paniculata_contig9284.17067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI) HSP 1 Score: 330 bits (845), Expect = 2.570e-101 Identity = 161/217 (74.19%), Postives = 185/217 (85.25%), Query Frame = 1 Query: 1 IIERVKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
++ RV QME+HP H + DP+ VAR+SK+I LEE+VRQGWK E+KLKQPAWDEFLA+CRVL RYDALKD + TPTAFGR+VG+INA+N+LWMALVLTR +I LG+TELASLMPAI+NEY+RPD TLYG SE V FL+EL PVASELSEIQ+LEQ + PVRLDG LCGLVEGWA+GCDWSELV STSLDQGDLCRILRR ME+LRQIPVL
Sbjct: 1096 VMSRVAEQMENHPVHQVEDPESVARLSKEIISLEEQVRQGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVS---TPTAFGRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 1309
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A6H5L415_9PHAE (DSHCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L415_9PHAE) HSP 1 Score: 308 bits (789), Expect = 4.060e-98 Identity = 161/251 (64.14%), Postives = 184/251 (73.31%), Query Frame = 1 Query: 1 IIERVKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKD---------KDDGQG-------------------------PTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
++ RV QME+HPAH + DP+ VAR SK+I LEE QGWK E+KLKQPAWDEFLA+CRVL RYDALKD ++DG P PTAFGR+VG+INA+N+LWMALVLTR +I LG+TELASLMPAI+NEY+RPD TLYG SE V FL+EL PVASELSEIQ+LEQ + PVRLD LCGLVEGWA+GCDWSELV STSLDQGDLCRILRR ME+LRQIPVL
Sbjct: 324 VMSRVAEQMENHPAHHVEDPESVARQSKEIISLEE---QGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVSTDASGEEDGAAAXXXXXXXXXDKKADSKRAKKKWGEPKPTAFGRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDSKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 571
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA) HSP 1 Score: 236 bits (603), Expect = 2.850e-68 Identity = 121/232 (52.16%), Postives = 160/232 (68.97%), Query Frame = 1 Query: 1 IIERVKVQMESHPAHSIGD--PDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPT-------------PTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
+++RV+ Q+E+HP H + + +EV SK I LE++VR GW+ E K +QPAWD+F++I RVL+RY AL +D Q TAFG LVG INADN+LW+ALVLT I++L +LA L+PAII+EYSRPD LYG SE V ++ L P+A+EL+ +Q+ D+PV+LD L GLVE WA GCDW+EL STSLDQGD+CR+LRRTME+LRQI +L
Sbjct: 896 VVQRVREQLEAHPLHGLDNVTKEEVLNASKDISALEDQVRNGWRSELKFRQPAWDDFVSITRVLIRYGALLPEDLSQESDVEDVGSNEKLRLRSTAFGDLVGGINADNELWLALVLTSSAIKALSDVQLAGLVPAIISEYSRPDMFNLYGVSEEVSLCVEALVPLATELTTVQLENAVDLPVKLDASLGGLVESWALGCDWAELCASTSLDQGDICRLLRRTMEVLRQIALL 1127
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A1Z4JAL9_LEPBY (DSH-like protein n=5 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A1Z4JAL9_LEPBY) HSP 1 Score: 152 bits (385), Expect = 6.090e-39 Identity = 82/211 (38.86%), Postives = 120/211 (56.87%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
V+ Q+E+HP H GD ++ + K+I L+ ++ + + Q W+EF+A+ VL ++ L D TPT G AI DN+LW+ L L ++ L LA+ A++ E SRPD+ T Y SE V+ L EL V +L ++Q Q +PV L+ + GLVE WA G DW EL +TSLD+GD+ R+LRRT++ L QIP
Sbjct: 655 VQAQLEAHPVHQWGDRPQIIKRQKRIEMLQSEIDDRQEKLDRQSQRHWEEFVALIEVLRKFGCLDDL------TPTILGEATAAIRGDNELWLGLALMSHDLDHLDPHHLATACAALVTEVSRPDSWTRYDVSEPVLEALSELRRVRRQLFQVQRRYQVVLPVWLEDEMVGLVEQWALGVDWLELCKNTSLDEGDVVRLLRRTLDFLSQIP 859
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A8J8CIT6_9CYAN (DEAD/DEAH box helicase n=1 Tax=Myxacorys almedinensis A TaxID=2690445 RepID=A0A8J8CIT6_9CYAN) HSP 1 Score: 151 bits (381), Expect = 2.110e-38 Identity = 86/221 (38.91%), Postives = 124/221 (56.11%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL--VSESWR 669
V QME+HP +S GD ++ + ++I L+ +V+ + Q W+EFLA+ +L + L D PTA G+ AI DN+LW+ L L + L LA+ A++ E SRPD+ T Y SE V+ L EL + +L ++Q Q +PV L+ L GL+E WA G DW EL +TSLD+GD+ RILRRT++ L QIP + +SE R
Sbjct: 658 VLAQMEAHPVNSWGDRAQILKRQRRIQGLQAEVQDRQTKLGRQSQRHWEEFLALLDILQSFGCLDDL------RPTALGQATAAIRGDNELWLGLSLMSGELDHLDPHHLATACAALVTEVSRPDSWTHYDTSETVLQALGELRGIRRQLFQVQRRHQVALPVWLEDELIGLIEQWALGVDWLELCSNTSLDEGDVVRILRRTLDFLSQIPHVPHISEILR 872
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A0P4US24_9CYAN (Putative helicase n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A0P4US24_9CYAN) HSP 1 Score: 150 bits (378), Expect = 5.340e-38 Identity = 88/223 (39.46%), Postives = 125/223 (56.05%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKV--RQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL--VSESWR 669
V QME+HP H G+ + + ++I L E++ RQ K++ K Q WDEF+A+ +L R+ L D TPTA G AI DN+LW+ L L + L A+ A++ E SRPDT Y S+ V+ L L + +L ++Q Q +PV L+ L G+VE WA G DW EL +TSLD+GD+ RILRRT+++L QIP + V E+ R
Sbjct: 655 VLAQMEAHPVHEWGNRPQTLKRQRRIETLREEISDRQA-KLDEKT-QRHWDEFVALIEILRRFGCLDDL------TPTALGESTAAIRGDNELWIGLALMSGELDPLDPHHFAAACAALVTEVSRPDTWIRYDVSDPVLEALGGLRSIRRQLFQLQRRYQVALPVWLEDELVGIVEQWALGADWGELCSNTSLDEGDVVRILRRTLDLLSQIPHMPHVREALR 869
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A1D2PB61_9CYAN (DSHCT domain-containing protein n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2PB61_9CYAN) HSP 1 Score: 138 bits (348), Expect = 7.740e-37 Identity = 71/211 (33.65%), Postives = 119/211 (56.40%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
V+ Q+E+HP H G+ + + Q+ LE +++Q ++ Q W+EFL + +L ++ L + PT G++ AI +N+LW+ LV + +L LA+ + A++ E RPD+M + SE V+ L L + ++ ++Q +P+ L+ L LVE WA G +W EL ++TSLD+GD+ RILRRT+++L QIP
Sbjct: 15 VQAQLEAHPLHQSGNAASIFKRRTQVAELEGEIQQMQAQVQQQSQRNWEEFLNLIEILQYFECLDNL------VPTRLGQIAAAIRGENELWLGLVFASGELDNLDPHHLAAAIAALVTETPRPDSMVRFDLSEEVLEALSRLRGIRRKMFQLQRRYNVALPIWLEFELIALVEQWALGMEWVELCENTSLDEGDVVRILRRTLDLLSQIP 219
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: UPI0019EED178 (DEAD/DEAH box helicase n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019EED178) HSP 1 Score: 145 bits (366), Expect = 2.190e-36 Identity = 82/213 (38.50%), Postives = 119/213 (55.87%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKV--RQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
V+ QM+ HP H+ GD +V + +++ LEE++ RQG + K Q W EFL + +L + L+D PT G AI DN+LW+ L L LG LA+ A++ E SRPDT T YG SE + L+ + + ++ + Q + +PV + L GLVE WA G +W EL ++TSLD+GD+ RILRRT++ L QIP
Sbjct: 655 VQAQMDEHPMHTWGDRGKVQKQQRRLVRLEEELDDRQGKLV--KQSQQRWQEFLGLIEILEHFGCLEDFK------PTRLGEATAAIRGDNELWLGLALMSGEFDHLGPHHLAACCAALVVEVSRPDTWTRYGISENTLEALEGVRGIRRQVFQQQRRREIMLPVWFELDLIGLVEQWALGTEWLELCENTSLDEGDVVRILRRTLDFLSQIP 859
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A7S2DG78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG78_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.340e-36 Identity = 81/196 (41.33%), Postives = 120/196 (61.22%), Query Frame = 1 Query: 73 RISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGC-DWSELVDSTSLDQGDLCRILRRTMEILRQIPVLVS 657
R++KQ E++V G ++ W++FLA+ VL R+ A+ DG PT G LVG+ N+DN+LW+AL+LT P ++ L ELASL+ A++ +Y+RPDT +G S V + L +A L + Q+ D PV+L G GLVE WASG W++L STS++QGD+C +LRRTME+LR + + +
Sbjct: 900 RLAKQKKRREKQVEAGSQV--------WEDFLAMRDVLERFSAI----DGDNK-PTDLGLLVGSANSDNELWLALILTSPCVRRLSAPELASLISAVMIQYTRPDTFVAFGPSAAVTIAAESLRELAETLYDAQVEFDVDCPVQLAGSYAGLVESWASGLVTWNQLTSSTSMNQGDVCTMLRRTMEVLRSMTSIAA 1082
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A3M9Z168_9CYAN (RNA helicase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9Z168_9CYAN) HSP 1 Score: 144 bits (364), Expect = 4.050e-36 Identity = 77/211 (36.49%), Postives = 119/211 (56.40%), Query Frame = 1 Query: 13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
++ Q++ HP HS+G P + + K+I +++++ + + Q W EFL++ +L + L+D PT G++ AI DN+LW+ L L + +L LA+ A++ E SRPD T Y AS V L EL + EL ++Q Q +PV L+ GLVE WA G +W+EL +TSLD+GD+ RILRRT++ L Q+P
Sbjct: 649 LEAQLKDHPLHSVGHPTYLLKRQKRIERMQDELASRRQKLSQHSQRYWQEFLSLMEILQAFGCLEDAK------PTPLGQVAAAIRGDNELWLGLALASGELDTLDPHHLAAACAALVTEVSRPDNWTRYDASLEVETALGELRSIRRELFKLQRRHQVALPVWLETEWMGLVEQWALGVEWTELCANTSLDEGDVVRILRRTVDFLSQVP 853 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9284.17067.1 >prot_H-paniculata_contig9284.17067.1 ID=prot_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp MESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAIback to top mRNA from alignment at H-paniculata_contig9284:3473..8300+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9284.17067.1 ID=mRNA_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4828bp|location=Sequence derived from alignment at H-paniculata_contig9284:3473..8300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9284:3473..8300+ >mRNA_H-paniculata_contig9284.17067.1 ID=mRNA_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig9284:3473..8300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |