mRNA_H-paniculata_contig9280.17065.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9280.17065.1
Unique NamemRNA_H-paniculata_contig9280.17065.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9280.17065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9280contigH-paniculata_contig9280:8765..9547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9280.17065.1prot_H-paniculata_contig9280.17065.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9280 8795..9547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.2773468-UTR-H-paniculata_contig9280:8764..87941622931155.2773468-UTR-H-paniculata_contig9280:8764..8794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9280 8765..8794 +
1691481615.3077743-UTR-H-paniculata_contig9280:8764..87941691481615.3077743-UTR-H-paniculata_contig9280:8764..8794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9280 8765..8794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.289588-CDS-H-paniculata_contig9280:8794..88691622931155.289588-CDS-H-paniculata_contig9280:8794..8869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9280 8795..8869 +
1691481615.3186593-CDS-H-paniculata_contig9280:8794..88691691481615.3186593-CDS-H-paniculata_contig9280:8794..8869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9280 8795..8869 +
1622931155.30486-CDS-H-paniculata_contig9280:9436..95471622931155.30486-CDS-H-paniculata_contig9280:9436..9547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9280 9437..9547 +
1691481615.3268359-CDS-H-paniculata_contig9280:9436..95471691481615.3268359-CDS-H-paniculata_contig9280:9436..9547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9280 9437..9547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9280.17065.1

>prot_H-paniculata_contig9280.17065.1 ID=prot_H-paniculata_contig9280.17065.1|Name=mRNA_H-paniculata_contig9280.17065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MALRAEPYLIQEFNHLAEEIEHLNEATNGAIPRHLSHGELRERFRDLAAR
SVPLLRRVRVI*
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mRNA from alignment at H-paniculata_contig9280:8765..9547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9280.17065.1 ID=mRNA_H-paniculata_contig9280.17065.1|Name=mRNA_H-paniculata_contig9280.17065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at H-paniculata_contig9280:8765..9547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGACGAGACGCAGGCGAATCTCGCATTTATGGCGCTGCGGGCGGAACC
TTACCTCATCCAAGAGTTCAACCATCTTGCCGAGGAGATAGAACACCTAA
ACGAGGTTGGTTAGGCCCCGAAGTTGGTTGGTCGGTTAGCCGCCGCCGCC
GCCGCCGCCGCCGCCGCGTTAATGTTCTTTGGACGGTTTCCGGCTCGCTG
CTTTGTGTGACTTATTCCTGGCTCGGCGGCGGATCTTCATTACAAAACTG
TACCTAGATTGTTGCGGCTTTGGAGGGGTGCTGTGCAATTTTCACGTTGG
CATCCGCCCTTTGAGAAAGCACTGCCCTCCGTGGCCGCACTAATGCGACC
TGCCTAATCTATGATTCTGTGCTTTCGTACCCATTGTGTGTTTTCTTTGG
CGTGTTCAGCACCATTTGCGCCAACATATGTCTTTTTCACAAACCTCAAA
AGTTGATGGGTTCTTGCGGTATACGGCCACCCCCCCCCCCCTTGTATGTT
TATAGTGTTCGTTAATATTTCCGTAGCTTGAAAAATATCTCATCACCTCT
CATTCCCCTATTTGCTTCTTCTGAAGTCGTGAGTCCAGTGACATTTACGA
GTATAATACAGCTGCACATGTCTCTTGCGCTAACTCCCCCCCCACTCCCC
CCTCGTGCCCCAAATGCACTAGGCGACGAACGGCGCGATCCCTCGTCACT
TGTCGCATGGAGAGCTCCGCGAGCGTTTTCGGGATCTCGCTGCTCGGAGT
GTGCCACTCCTGCGACGAGTTCGGGTAATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9280:8765..9547+

>mRNA_H-paniculata_contig9280.17065.1 ID=mRNA_H-paniculata_contig9280.17065.1|Name=mRNA_H-paniculata_contig9280.17065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig9280:8765..9547+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGCGGGCGGAACCTTACCTCATCCAAGAGTTCAACCATCTTGC
CGAGGAGATAGAACACCTAAACGAGATGGCGCTGCGGGCGGAACCTTACC
TCATCCAAGAGTTCAACCATCTTGCCGAGGAGATAGAACACCTAAACGAG
GCGACGAACGGCGCGATCCCTCGTCACTTGTCGCATGGAGAGCTCCGCGA
GCGTTTTCGGGATCTCGCTGCTCGGAGTGTGCCACTCCTGCGACGAGTTC
GGGTAATTTAAGCGACGAACGGCGCGATCCCTCGTCACTTGTCGCATGGA
GAGCTCCGCGAGCGTTTTCGGGATCTCGCTGCTCGGAGTGTGCCACTCCT
GCGACGAGTTCGGGTAATTTAA
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