mRNA_H-paniculata_contig928.17063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig928.17063.1
Unique NamemRNA_H-paniculata_contig928.17063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig928.17063.1 vs. uniprot
Match: D7FQN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQN6_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 9.720e-122
Identity = 342/815 (41.96%), Postives = 420/815 (51.53%), Query Frame = 2
Query:  578 ALVGFYGVHNPGKVSTIDVILAQYHGKEDLLIQRLEQKYSVDLSYARRTAGIQSSSTIPKLASPPPPTAATTASIPASTNVANISSARPDSLSPPRP--------------------------------------------------TKVDPSAAVATANENQQNLRRGNGPTRVQISGQRLGAPTPQSNAAVSGAASSSYMTYLADQMRSKVENLLPSPGPSSV----------PGSLSSLPTSNYRAQHVVAGRGVGIAGDNGGSRLQRNAAIGPGHWGNQPVPSTAGSELSLNSS-EFPAVDGVAAADHADDVAFARVKALEEERSGLLVACRRLQSKAEAAAREAAATEELREAGQRKMAGFAERAAAAERQTREAAVRIRSLESGQAALQTELQTSVRHCAAKHSQLLSAIDLQMALRSQLEGLLEVVPPSSWVRPKPGTGARDVRGPSEARGG--TQSADFPGGTTKETPDGGGSFAISTSTPPLERRVESQDSGDLENRDVKNDKRMHAVSGIGCGDGGHGGDETEG--------GTLDELKRRCSLLEIALKASRREASEARRARDVAELTVSKQRAALVTLRTRVSDLEASFAKEQGSGKMAMEAARGLEAELGLTLDQLRDAEAKLSDQAEENARLGEELRSVEARLHMASVARAALVSFCRQERTAVELDAAEHVARAEESAAMRGEEGLAQGLELVRVAEEACEKRVAAATEEMDRLGKAVFAARAELAGSKAREQAVRRELTRAAETIAAFSQQESVAGGAPSGEVGVGETGKSARDSESLRDPVFTVESAGSNAGVRGSGR 2809
            ALVGFY VHNPG+++ +D IL QY GKE LLI+RLE KYS DLSYARR     ++   P+   PPP        +P         S                                                             T      +V TA+ N+    R               + T Q N    G ++S+YMTYLADQ+RS VE LLP+                P S+S +PT+        AG    +  +  G+        G G +      + AG   S+N+S       G       D    ARV+ALEEER GL+ ACRR+Q+KAEAAARE AA +EL E GQ+K++GFAERA AAER+ R A  R+R+LE GQ+ALQ E + S R CA KH+QLLSAIDLQM+LRSQLEGLLEVVPPS    P P           EA G   T +AD    + +  PD            P+                                 GGH               G L+E++RRCS+LE++L+ASRREA EARR+RD AE TV +Q  AL  L+ RVS LEAS AKEQ +G+ A +AA GLEAEL L L QLR AEA LSDQA+ N+RL EELR   ARL  AS ARAALV FCRQER +VE+ AAE VA AEESA MRGE+GLA+GLEL R+AEE  +KR A    E+DRLGKA+FA+RAELAGS+AR Q +RREL RAAETI   S+         S  + VGE G +    +    P     + G   G R S R
Sbjct:   20 ALVGFYSVHNPGRIANLDAILTQYAGKEGLLIERLEHKYSADLSYARRAPA--TAPITPEGGIPPP--------VPDDDKPLTARSQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTLSRSPGSVDTADSNRPGFSR-------------TASGTAQPNGV--GPSTSNYMTYLADQIRSNVEGLLPASNSGXXXXXXXXXXXSPNSVSHVPTT------ATAGGKKQLPAEVEGTAWGARGGRGAGTY------TGAGDGSSINTSGHHQYTPG-----EVDHTLTARVRALEEERGGLVAACRRMQAKAEAAAREGAAPKELPEGGQKKISGFAERAMAAERRARGATARVRTLEYGQSALQAEKEASERRCAVKHAQLLSAIDLQMSLRSQLEGLLEVVPPSPLSGPSPKANGSASLPRQEAAGSAVTVAADSRVASLERPPDPASDEVAPAGPAPV---------------------------------GGHASGXXXXXXXXXXXXGGLNEIRRRCSMLEVSLRASRREALEARRSRDSAETTVRQQSGALAKLQERVSALEASLAKEQEAGQGASQAASGLEAELELRLGQLRKAEADLSDQADANSRLTEELRGALARLRTASTARAALVDFCRQERESVEMLAAERVALAEESAGMRGEDGLARGLELARMAEELGDKRAAGLELEVDRLGKALFASRAELAGSEARVQGLRRELERAAETIVGLSRSAIA-----SSSIAVGE-GATVLSPQGAGGPAAAAGTGGKGGGTRISSR 753          
BLAST of mRNA_H-paniculata_contig928.17063.1 vs. uniprot
Match: A0A6H5KSE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE0_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.890e-60
Identity = 144/213 (67.61%), Postives = 165/213 (77.46%), Query Frame = 2
Query: 2024 LLEIALKASRREASEARRARDVAELTVSKQRAALVTLRTRVSDLEASFAKEQGSGKMAMEAARGLEAELGLTLDQLRDAEAKLSDQAEENARLGEELRSVEARLHMASVARAALVSFCRQERTAVELDAAEHVARAEESAAMRGEEGLAQGLELVRVAEEACEKRVAAATEEMDRLGKAVFAARAELAGSKAREQAVRRELTRAAETIAAFSQ 2662
            +LE++L+ASRREA E RR+RD AE TV +QR AL  L+ RVS LEAS AKEQ +GK A +AA GLEAEL L L QLR AEA LSDQA+ N+RL EELR   ARL  AS ARAALV FCRQER +VEL AAE VA AEESA MRGEEGLA+GLEL R+AEE  +KR A    E+DRLGKA+FA+RAELAGS+AR Q +RREL RAAETI   S+
Sbjct:    1 MLEVSLRASRREALEVRRSRDSAETTVRQQRGALAKLQERVSALEASLAKEQEAGKGASQAASGLEAELELRLGQLRKAEADLSDQADANSRLTEELREALARLGTASTARAALVDFCRQERESVELLAAERVAVAEESAGMRGEEGLARGLELARMAEELGDKRAAGLELEVDRLGKALFASRAELAGSEARVQGLRRELDRAAETIVGLSR 213          
BLAST of mRNA_H-paniculata_contig928.17063.1 vs. uniprot
Match: A0A6H5KTI1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.370e-14
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 2
Query:  563 DDLRKALVGFYGVHNPGKVSTIDVILAQYHGKEDLLIQRLEQKYSVDLSYARR 721
            D+LRKALVGFY VHNPG+++ +D IL QY GKE LLI+RLE KYS DLSYARR
Sbjct:  167 DELRKALVGFYSVHNPGRIANLDAILTQYAGKEGLLIERLEHKYSADLSYARR 219          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig928.17063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQN6_ECTSI9.720e-12241.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSE0_9PHAE2.890e-6067.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTI1_9PHAE2.370e-1473.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig928contigH-paniculata_contig928:19517..24660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001010.1
Exons6
Model size3181
Cds size2973
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig928.17063.1prot_H-paniculata_contig928.17063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig928 19655..24590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.9134288-UTR-H-paniculata_contig928:19516..196541622931154.9134288-UTR-H-paniculata_contig928:19516..19654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig928 19517..19654 -
1691481615.2005105-UTR-H-paniculata_contig928:19516..196541691481615.2005105-UTR-H-paniculata_contig928:19516..19654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig928 19517..19654 -
1622931155.0847476-UTR-H-paniculata_contig928:24590..246601622931155.0847476-UTR-H-paniculata_contig928:24590..24660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig928 24591..24660 -
1691481615.273573-UTR-H-paniculata_contig928:24590..246601691481615.273573-UTR-H-paniculata_contig928:24590..24660Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig928 24591..24660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.9328492-CDS-H-paniculata_contig928:19654..205061622931154.9328492-CDS-H-paniculata_contig928:19654..20506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 19655..20506 -
1691481615.2130923-CDS-H-paniculata_contig928:19654..205061691481615.2130923-CDS-H-paniculata_contig928:19654..20506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 19655..20506 -
1622931154.966263-CDS-H-paniculata_contig928:20774..213031622931154.966263-CDS-H-paniculata_contig928:20774..21303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 20775..21303 -
1691481615.223094-CDS-H-paniculata_contig928:20774..213031691481615.223094-CDS-H-paniculata_contig928:20774..21303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 20775..21303 -
1622931154.9918814-CDS-H-paniculata_contig928:21602..216851622931154.9918814-CDS-H-paniculata_contig928:21602..21685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 21603..21685 -
1691481615.234594-CDS-H-paniculata_contig928:21602..216851691481615.234594-CDS-H-paniculata_contig928:21602..21685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 21603..21685 -
1622931155.0054052-CDS-H-paniculata_contig928:22052..221931622931155.0054052-CDS-H-paniculata_contig928:22052..22193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 22053..22193 -
1691481615.2424817-CDS-H-paniculata_contig928:22052..221931691481615.2424817-CDS-H-paniculata_contig928:22052..22193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 22053..22193 -
1622931155.0466864-CDS-H-paniculata_contig928:22757..236181622931155.0466864-CDS-H-paniculata_contig928:22757..23618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 22758..23618 -
1691481615.2502906-CDS-H-paniculata_contig928:22757..236181691481615.2502906-CDS-H-paniculata_contig928:22757..23618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 22758..23618 -
1622931155.0654838-CDS-H-paniculata_contig928:24083..245901622931155.0654838-CDS-H-paniculata_contig928:24083..24590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 24084..24590 -
1691481615.2649066-CDS-H-paniculata_contig928:24083..245901691481615.2649066-CDS-H-paniculata_contig928:24083..24590Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig928 24084..24590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig928.17063.1

>prot_H-paniculata_contig928.17063.1 ID=prot_H-paniculata_contig928.17063.1|Name=mRNA_H-paniculata_contig928.17063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=991bp
MKKHSPILSKESVEGNSEPTHAPLENNSLNKRDPGHASGIAAADTSSEQP
LTEARGGRGAKCKDGMRSRTSQGLGEDIEREDPETRTMREASHASVTDIV
GNTARLGLTGKEQVGTTTVVGSTTAATLDTPVAPVAFRERLDGALQMEEG
ATEKIECGDASGTEDDLRKALVGFYGVHNPGKVSTIDVILAQYHGKEDLL
IQRLEQKYSVDLSYARRTAGIQSSSTIPKLASPPPPTAATTASIPASTNV
ANISSARPDSLSPPRPTKVDPSAAVATANENQQNLRRGNGPTRVQISGQR
LGAPTPQSNAAVSGAASSSYMTYLADQMRSKVENLLPSPGPSSVPGSLSS
LPTSNYRAQHVVAGRGVGIAGDNGGSRLQRNAAIGPGHWGNQPVPSTAGS
ELSLNSSEFPAVDGVAAADHADDVAFARVKALEEERSGLLVACRRLQSKA
EAAAREAAATEELREAGQRKMAGFAERAAAAERQTREAAVRIRSLESGQA
ALQTELQTSVRHCAAKHSQLLSAIDLQMALRSQLEGLLEVVPPSSWVRPK
PGTGARDVRGPSEARGGTQSADFPGGTTKETPDGGGSFAISTSTPPLERR
VESQDSGDLENRDVKNDKRMHAVSGIGCGDGGHGGDETEGGTLDELKRRC
SLLEIALKASRREASEARRARDVAELTVSKQRAALVTLRTRVSDLEASFA
KEQGSGKMAMEAARGLEAELGLTLDQLRDAEAKLSDQAEENARLGEELRS
VEARLHMASVARAALVSFCRQERTAVELDAAEHVARAEESAAMRGEEGLA
QGLELVRVAEEACEKRVAAATEEMDRLGKAVFAARAELAGSKAREQAVRR
ELTRAAETIAAFSQQESVAGGAPSGEVGVGETGKSARDSESLRDPVFTVE
SAGSNAGVRGSGRDRGRDPEVGSGGSVARSSLSSEDGGRKSGVTPSKMPV
ATKLQPAEVPTAGALAGMNVVKGVDERSSPDGHIGYDVEL*
back to top

mRNA from alignment at H-paniculata_contig928:19517..24660-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig928.17063.1 ID=mRNA_H-paniculata_contig928.17063.1|Name=mRNA_H-paniculata_contig928.17063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5144bp|location=Sequence derived from alignment at H-paniculata_contig928:19517..24660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTCAACGCAGCACAGTAGTATCTCCTACCGTGTTGAGCCTCCTGGT GCATCCATCTGATATGAAGGATGAAGAAACATAGTCCCATACTATCCAAG GAGTCAGTCGAAGGAAATTCTGAGCCAACTCATGCTCCACTTGAAAATAA TTCCCTGAACAAACGAGACCCAGGACATGCTTCCGGTATTGCTGCTGCTG ATACCTCTTCTGAGCAGCCCTTGACTGAAGCACGAGGGGGACGAGGAGCA AAATGCAAAGATGGGATGAGGTCGAGGACATCCCAAGGTCTCGGGGAAGA CATCGAACGCGAAGACCCAGAGACAAGAACAATGAGAGAAGCAAGTCATG CATCTGTCACGGATATTGTGGGCAACACTGCGCGGCTGGGGCTTACTGGA AAGGAACAGGTGGGTACTACAACTGTCGTCGGATCAACAACCGCTGCCAC CCTGGACACACCGGTTGCGCCGGTTGCGTTCAGAGAGAGGTTGGATGGTG CATTGCAGATGGAGGAGGGTGCAACCGAGAAGATAGAGTGTGGTGATGCG TCAGGTACTGAGGACGATCTTCGCAAGGTACGTGCTTTTTCAGAGGTGTT TCCCAATAGGGTACTAGAGAACGGGTTGCTTGTCGGAATCAACAACGATA TCAACAGCCATCCAGTTGCAGCACACGACCACAATATAGACAATCGACTC TGACCATGGCCCAAGTGTACTATGATATACTTCAGTTCAATGTTTGGCCT CCTCTGTTGACTCCGGGAGCGCACAGATAGGGCCCTGTTTACCAATTCAA TGAGAGTCGATAAAAGCGACTGTAAATACTTGTATGGGATTCAGCAACTT CCACGAGCTAAACTTGGTGCAGTGATCCTCCGCACTTACGTACTCGTCCC ACTTTGCCACTCCACTCCGCTATCCGATCCGTCCTTGCCAGGAGCAGAGC ATACCCACCCATCAGAGTTGGAGAGACACACCGAGATACATGAAACACCA TTGTTTGCATTGCTTGTTGTTCCGTTTGTTTGATATAACTAGGCGTTAGT GGGGTTCTACGGCGTTCACAATCCTGGCAAAGTCTCCACGATAGACGTTA TACTTGCGCAGTATCACGGCAAGGAAGACCTCCTCATCCAGCGCCTCGAG CAGAAATACTCAGTGGATCTCTCCTACGCCCGACGAACGGCTGGAATACA ATCATCCTCGACAATACCAAAGCTAGCGTCACCTCCCCCCCCTACAGCAG CAACCACGGCATCCATACCAGCGTCGACAAATGTCGCAAACATCTCTTCT GCTAGACCCGATTCCCTCTCACCACCACGACCAACAAAGGTTGACCCTTC GGCGGCGGTGGCGACGGCCAACGAAAACCAGCAAAATTTGCGCCGCGGGA ATGGCCCGACTCGTGTCCAAATCTCAGGCCAGCGTTTAGGCGCACCAACA CCCCAGAGCAATGCTGCGGTTAGCGGAGCGGCCTCTTCGAGCTACATGAC TTACCTGGCGGACCAAATGAGGTCAAAGGTCGAAAACCTCCTCCCAAGCC CCGGTCCCAGCAGTGTACCAGGTTCGTTGTCTAGCCTCCCGACCTCCAAC TATCGAGCGCAACATGTCGTAGCCGGTCGTGGTGTTGGTATTGCTGGCGA CAATGGTGGGTCTCGTCTGCAGCGTAACGCGGCTATTGGACCTGGCCATT GGGGCAATCAGCCGGTCCCATCGACAGCTGGAAGCGAATTGAGCTTGAAT TCGTCGGAATTTCCTGCGGTGGATGGCGTGGCGGCGGCAGACCATGCTGA CGATGTCGCTTTTGCGCGCGTTAAAGCGTTGGAGGAGGAGCGCTCAGGGT TGCTTGTGGCATGCAGGCGGCTGCAAAGCAAGGCGGAGGCGGCGGCAAGA GAGGTGTGGGCAGTACGGTGTGTAGGAAAGCCAACTCTGTTGTCGCTCGA CCTCTAATTTTTAATATTCGAGACAAGGATGCATGACTACGCCGTGGTTT TCCAGTTGCCGCTTTTTCTTTTCGCCGAAAAACGTCATTGGTGCACAGTC TGCCTCGGTGGTGATCACTTGACGCTATAAAGCACTTGGTTGTATCCTGC TTTCGAACCTCGTGCGACACCTCACGAGGTCGTGATATGCTGTCGCACTT GAGTTCATCTCAGGCGATAGACTCGAGCGTCCGTATTCGAAGACAAGCGG CGTGATCCCGTTTCGCGCCGCAGCAAGTCGCCAGCAACTTGAAAACATCG TTTAGCAAACTCGTTCATCAGGCAGCCCTCCTATACATTTCGGCAAATAT ATCTGTGTGCACATCTAATAACGCTGACAGCACGCCAAAGGTCCATTGCG ATACCGCCTCTGCTCAATGGCCGTCCGAAGCCTATTTTTCCGAGTGTGCA CTCGAGAGCGTCGCCAAAAGCGTTTCCACTCCTGCACGCACGTGTTCTTT TGACTCGCTGTGTGAAGGCAGCAGCAACGGAGGAGCTGCGGGAGGCCGGG CAGCGAAAAATGGCCGGGTTCGCCGAGCGTGCTGCCGCCGCCGAGCGACA AACGCGAGAGGCGGCAGTGCGGATACGTTCTCTGGAGTCCGGGCAGGCAG CTCTGCAGGTGCTCCTGAGTTTTACTAGGTATCGGGAGATGAATGATCGC GTCATTGTGGTGCTACCAAAATTCGTTGTCATTGTTGCTGTTGCCGTTGT GTTTGGTGATGGTGGCGATGGCGGCGGTGGCAGCGGTCGAAGAGGTGGAC CGTGGCGAGACTATGTTGAGTAACCTGTGCTATAATTATAGTCAGCTGGT TGTGGAGTTGCAAGCTGTTGTGTTTTCGTGAAGTTTGAGGCATTTTGTTT GTTATTCATCTTGTGCATGTCTCTTATTTTCATCTGTGAGAATTTTTACC ACACTGGGCATATTGCGAGCAAGGCTTCACTACCGTGAGATCTCCGCGTT TGCTGCGATTTATGTGCCATGTTAGACGGAGCTGCAAACCTCGGTTCGGC ACTGCGCGGCGAAGCACTCTCAACTGCTATCAGCAATTGATTTGCAGATG GCCCTTCGGTGAGAGTCTCCCCGGCTCTTGCTCTAAATAGTCAATCTATG GTTCTCATGCTCGCACGCCCTAAATCGGTATGCCGAAAGAGTGGGCGTAG AATGGATTGTAGCAGATATGGCGCAGCCGTGTGTGATCATCCCGCGTGAA CTGTAGAATATTGTCTTGGTAGGTAATGCCTTTTCCCCCTCCTTTTCACC CCCGTGAGCAACGCATCGATGCTAGATGCTGGACCTATCATCGCAGTCTA CGCCATAGCTCTCACCCGCCGAACATCCAATGCACATGAAATGTACCCCC TCATCAGATCACAGTTGGAGGGGTTATTAGAAGTCGTTCCCCCTTCGTCA TGGGTTCGACCGAAACCGGGCACTGGTGCTAGGGACGTGAGAGGACCCTC AGAAGCGCGCGGGGGGACGCAATCCGCGGATTTTCCTGGTGGAACCACGA AAGAGACTCCAGATGGCGGAGGGTCTTTTGCCATCAGCACCTCAACACCA CCGTTGGAACGTCGAGTGGAAAGCCAAGATTCAGGTGATCTAGAGAATCG AGATGTCAAAAATGACAAAAGGATGCATGCAGTTTCTGGTATAGGTTGTG GCGATGGTGGCCACGGGGGAGATGAGACTGAGGGGGGGACGCTAGACGAG TTGAAGAGGCGGTGTTCTTTGCTGGAGATCGCGCTAAAAGCTTCGAGACG CGAGGCGTCTGAGGCTCGACGGGCGAGGGACGTGGCGGAACTCACTGTCA GCAAACAGCGAGCAGCGTTGGTGACGCTACGGACAAGAGTTTCTGACCTA GAGGCGTCTTTTGCAAAGGAACAGGGGTCAGGCAAGGTGAGGACAGTGTG GCACAAAGCCGGATGTGGTCGGATCGGAGGTACACTGACCAACTGCTGTA TATCAAGGGACTGGGTCAGCGCTGACCGTGCCAGAAACCTGCCTCGGTTT CAAACTTCCTAATTGCTTCATAAGATCGCTGGATAAAAGAGGGAGAGAGA CACAGAGAAAGAGAGAGAGCAACGATATGTCGATGGTGTCTGTGAGTTCA CGTATACAATATTTGGTGCTATTTTTGTTTGTCTTCCCCGTAACCCCTAC GCAGATGGCGATGGAGGCTGCGCGTGGTCTTGAGGCCGAGCTAGGCCTTA CGCTAGATCAACTGCGAGACGCTGAAGCCAAGCTCTCAGATCAAGCTGAA GAAAACGCTCGCCTCGGGGAGGAACTCCGTAGCGTGGAAGCACGGCTACA CATGGCCTCCGTGGCCCGCGCAGCACTTGTTAGCTTTTGCCGACAAGAGA GGACCGCGGTAGAGCTCGACGCTGCGGAACACGTCGCCCGTGCGGAAGAG AGCGCGGCTATGCGCGGCGAGGAGGGGCTGGCCCAGGGCTTGGAGCTTGT GCGCGTAGCGGAAGAAGCATGCGAAAAGAGAGTTGCGGCGGCGACCGAGG AGATGGATCGACTCGGAAAAGCGGTGTTCGCTGCGCGAGCGGAGCTCGCC GGCAGCAAGGCGAGAGAACAGGCCGTGAGGAGAGAGCTGACGCGCGCTGC GGAAACCATCGCCGCTTTCAGTCAACAAGAGTCGGTCGCTGGCGGCGCCC CTTCCGGGGAGGTGGGTGTAGGCGAGACGGGAAAAAGCGCTAGGGATAGT GAGTCACTAAGAGATCCTGTCTTCACTGTCGAGTCTGCTGGTTCTAATGC TGGAGTCAGGGGTAGCGGTCGGGATCGGGGTCGAGATCCGGAGGTGGGCA GCGGTGGGTCTGTTGCGAGGTCGTCGTTGTCATCAGAGGATGGTGGCCGA AAAAGCGGGGTTACGCCAAGCAAGATGCCCGTGGCGACGAAATTGCAGCC GGCAGAAGTGCCGACTGCTGGGGCATTGGCAGGGATGAATGTAGTGAAAG GTGTCGATGAGAGGTCATCTCCTGACGGACATATAGGGTACGACGTGGAG TTATAGCGCCGAGATGTATAGCTCGCAGTGTTTTTGTAATTTTTGACCCC GAGTATCGCGCCATGTGACTCAACGCCCATTGTGGTATGTGTGCTACAAG TAGTGAGAGCGTGTTTAGGTTGGCGGGAGTGACTTATTTGTGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig928:19517..24660-

>mRNA_H-paniculata_contig928.17063.1 ID=mRNA_H-paniculata_contig928.17063.1|Name=mRNA_H-paniculata_contig928.17063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5946bp|location=Sequence derived from alignment at H-paniculata_contig928:19517..24660- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAACATAGTCCCATACTATCCAAGGAGTCAGTCGAAGGAAATTC
TGAGCCAACTCATGCTCCACTTGAAAATAATTCCCTGAACAAACGAGACC
CAGGACATGCTTCCGGTATTGCTGCTGCTGATACCTCTTCTGAGCAGCCC
TTGACTGAAGCACGAGGGGGACGAGGAGCAAAATGCAAAGATGGGATGAG
GTCGAGGACATCCCAAGGTCTCGGGGAAGACATCGAACGCGAAGACCCAG
AGACAAGAACAATGAGAGAAGCAAGTCATGCATCTGTCACGGATATTGTG
GGCAACACTGCGCGGCTGGGGCTTACTGGAAAGGAACAGGTGGGTACTAC
AACTGTCGTCGGATCAACAACCGCTGCCACCCTGGACACACCGGTTGCGC
CGGTTGCGTTCAGAGAGAGGTTGGATGGTGCATTGCAGATGGAGGAGGGT
GCAACCGAGAAGATAGAGTGTGGTGATGCGTCAGGTACTGAGGACGATCT
TCGCAAGATGAAGAAACATAGTCCCATACTATCCAAGGAGTCAGTCGAAG
GAAATTCTGAGCCAACTCATGCTCCACTTGAAAATAATTCCCTGAACAAA
CGAGACCCAGGACATGCTTCCGGTATTGCTGCTGCTGATACCTCTTCTGA
GCAGCCCTTGACTGAAGCACGAGGGGGACGAGGAGCAAAATGCAAAGATG
GGATGAGGTCGAGGACATCCCAAGGTCTCGGGGAAGACATCGAACGCGAA
GACCCAGAGACAAGAACAATGAGAGAAGCAAGTCATGCATCTGTCACGGA
TATTGTGGGCAACACTGCGCGGCTGGGGCTTACTGGAAAGGAACAGGTGG
GTACTACAACTGTCGTCGGATCAACAACCGCTGCCACCCTGGACACACCG
GTTGCGCCGGTTGCGTTCAGAGAGAGGTTGGATGGTGCATTGCAGATGGA
GGAGGGTGCAACCGAGAAGATAGAGTGTGGTGATGCGTCAGGTACTGAGG
ACGATCTTCGCAAGGCGTTAGTGGGGTTCTACGGCGTTCACAATCCTGGC
AAAGTCTCCACGATAGACGTTATACTTGCGCAGTATCACGGCAAGGAAGA
CCTCCTCATCCAGCGCCTCGAGCAGAAATACTCAGTGGATCTCTCCTACG
CCCGACGAACGGCTGGAATACAATCATCCTCGACAATACCAAAGCTAGCG
TCACCTCCCCCCCCTACAGCAGCAACCACGGCATCCATACCAGCGTCGAC
AAATGTCGCAAACATCTCTTCTGCTAGACCCGATTCCCTCTCACCACCAC
GACCAACAAAGGTTGACCCTTCGGCGGCGGTGGCGACGGCCAACGAAAAC
CAGCAAAATTTGCGCCGCGGGAATGGCCCGACTCGTGTCCAAATCTCAGG
CCAGCGTTTAGGCGCACCAACACCCCAGAGCAATGCTGCGGTTAGCGGAG
CGGCCTCTTCGAGCTACATGACTTACCTGGCGGACCAAATGAGGTCAAAG
GTCGAAAACCTCCTCCCAAGCCCCGGTCCCAGCAGTGTACCAGGTTCGTT
GTCTAGCCTCCCGACCTCCAACTATCGAGCGCAACATGTCGTAGCCGGTC
GTGGTGTTGGTATTGCTGGCGACAATGGTGGGTCTCGTCTGCAGCGTAAC
GCGGCTATTGGACCTGGCCATTGGGGCAATCAGCCGGTCCCATCGACAGC
TGGAAGCGAATTGAGCTTGAATTCGTCGGAATTTCCTGCGGTGGATGGCG
TGGCGGCGGCAGACCATGCTGACGATGTCGCTTTTGCGCGCGTTAAAGCG
TTGGAGGAGGAGCGCTCAGGGTTGCTTGTGGCATGCAGGCGGCTGCAAAG
CAAGGCGGAGGCGGCGGCAAGAGAGGCGTTAGTGGGGTTCTACGGCGTTC
ACAATCCTGGCAAAGTCTCCACGATAGACGTTATACTTGCGCAGTATCAC
GGCAAGGAAGACCTCCTCATCCAGCGCCTCGAGCAGAAATACTCAGTGGA
TCTCTCCTACGCCCGACGAACGGCTGGAATACAATCATCCTCGACAATAC
CAAAGCTAGCGTCACCTCCCCCCCCTACAGCAGCAACCACGGCATCCATA
CCAGCGTCGACAAATGTCGCAAACATCTCTTCTGCTAGACCCGATTCCCT
CTCACCACCACGACCAACAAAGGTTGACCCTTCGGCGGCGGTGGCGACGG
CCAACGAAAACCAGCAAAATTTGCGCCGCGGGAATGGCCCGACTCGTGTC
CAAATCTCAGGCCAGCGTTTAGGCGCACCAACACCCCAGAGCAATGCTGC
GGTTAGCGGAGCGGCCTCTTCGAGCTACATGACTTACCTGGCGGACCAAA
TGAGGTCAAAGGTCGAAAACCTCCTCCCAAGCCCCGGTCCCAGCAGTGTA
CCAGGTTCGTTGTCTAGCCTCCCGACCTCCAACTATCGAGCGCAACATGT
CGTAGCCGGTCGTGGTGTTGGTATTGCTGGCGACAATGGTGGGTCTCGTC
TGCAGCGTAACGCGGCTATTGGACCTGGCCATTGGGGCAATCAGCCGGTC
CCATCGACAGCTGGAAGCGAATTGAGCTTGAATTCGTCGGAATTTCCTGC
GGTGGATGGCGTGGCGGCGGCAGACCATGCTGACGATGTCGCTTTTGCGC
GCGTTAAAGCGTTGGAGGAGGAGCGCTCAGGGTTGCTTGTGGCATGCAGG
CGGCTGCAAAGCAAGGCGGAGGCGGCGGCAAGAGAGGCAGCAGCAACGGA
GGAGCTGCGGGAGGCCGGGCAGCGAAAAATGGCCGGGTTCGCCGAGCGTG
CTGCCGCCGCCGAGCGACAAACGCGAGAGGCGGCAGTGCGGATACGTTCT
CTGGAGTCCGGGCAGGCAGCTCTGCAGGCAGCAGCAACGGAGGAGCTGCG
GGAGGCCGGGCAGCGAAAAATGGCCGGGTTCGCCGAGCGTGCTGCCGCCG
CCGAGCGACAAACGCGAGAGGCGGCAGTGCGGATACGTTCTCTGGAGTCC
GGGCAGGCAGCTCTGCAGACGGAGCTGCAAACCTCGGTTCGGCACTGCGC
GGCGAAGCACTCTCAACTGCTATCAGCAATTGATTTGCAGATGGCCCTTC
GACGGAGCTGCAAACCTCGGTTCGGCACTGCGCGGCGAAGCACTCTCAAC
TGCTATCAGCAATTGATTTGCAGATGGCCCTTCGATCACAGTTGGAGGGG
TTATTAGAAGTCGTTCCCCCTTCGTCATGGGTTCGACCGAAACCGGGCAC
TGGTGCTAGGGACGTGAGAGGACCCTCAGAAGCGCGCGGGGGGACGCAAT
CCGCGGATTTTCCTGGTGGAACCACGAAAGAGACTCCAGATGGCGGAGGG
TCTTTTGCCATCAGCACCTCAACACCACCGTTGGAACGTCGAGTGGAAAG
CCAAGATTCAGGTGATCTAGAGAATCGAGATGTCAAAAATGACAAAAGGA
TGCATGCAGTTTCTGGTATAGGTTGTGGCGATGGTGGCCACGGGGGAGAT
GAGACTGAGGGGGGGACGCTAGACGAGTTGAAGAGGCGGTGTTCTTTGCT
GGAGATCGCGCTAAAAGCTTCGAGACGCGAGGCGTCTGAGGCTCGACGGG
CGAGGGACGTGGCGGAACTCACTGTCAGCAAACAGCGAGCAGCGTTGGTG
ACGCTACGGACAAGAGTTTCTGACCTAGAGGCGTCTTTTGCAAAGGAACA
GGGGTCAGGCAAGATCACAGTTGGAGGGGTTATTAGAAGTCGTTCCCCCT
TCGTCATGGGTTCGACCGAAACCGGGCACTGGTGCTAGGGACGTGAGAGG
ACCCTCAGAAGCGCGCGGGGGGACGCAATCCGCGGATTTTCCTGGTGGAA
CCACGAAAGAGACTCCAGATGGCGGAGGGTCTTTTGCCATCAGCACCTCA
ACACCACCGTTGGAACGTCGAGTGGAAAGCCAAGATTCAGGTGATCTAGA
GAATCGAGATGTCAAAAATGACAAAAGGATGCATGCAGTTTCTGGTATAG
GTTGTGGCGATGGTGGCCACGGGGGAGATGAGACTGAGGGGGGGACGCTA
GACGAGTTGAAGAGGCGGTGTTCTTTGCTGGAGATCGCGCTAAAAGCTTC
GAGACGCGAGGCGTCTGAGGCTCGACGGGCGAGGGACGTGGCGGAACTCA
CTGTCAGCAAACAGCGAGCAGCGTTGGTGACGCTACGGACAAGAGTTTCT
GACCTAGAGGCGTCTTTTGCAAAGGAACAGGGGTCAGGCAAGATGGCGAT
GGAGGCTGCGCGTGGTCTTGAGGCCGAGCTAGGCCTTACGCTAGATCAAC
TGCGAGACGCTGAAGCCAAGCTCTCAGATCAAGCTGAAGAAAACGCTCGC
CTCGGGGAGGAACTCCGTAGCGTGGAAGCACGGCTACACATGGCCTCCGT
GGCCCGCGCAGCACTTGTTAGCTTTTGCCGACAAGAGAGGACCGCGGTAG
AGCTCGACGCTGCGGAACACGTCGCCCGTGCGGAAGAGAGCGCGGCTATG
CGCGGCGAGGAGGGGCTGGCCCAGGGCTTGGAGCTTGTGCGCGTAGCGGA
AGAAGCATGCGAAAAGAGAGTTGCGGCGGCGACCGAGGAGATGGATCGAC
TCGGAAAAGCGGTGTTCGCTGCGCGAGCGGAGCTCGCCGGCAGCAAGGCG
AGAGAACAGGCCGTGAGGAGAGAGCTGACGCGCGCTGCGGAAACCATCGC
CGCTTTCAGTCAACAAGAGTCGGTCGCTGGCGGCGCCCCTTCCGGGGAGG
TGGGTGTAGGCGAGACGGGAAAAAGCGCTAGGGATAGTGAGTCACTAAGA
GATCCTGTCTTCACTGTCGAGTCTGCTGGTTCTAATGCTGGAGTCAGGGG
TAGCGGTCGGGATCGGGGTCGAGATCCGGAGGTGGGCAGCGGTGGGTCTG
TTGCGAGGTCGTCGTTGTCATCAGAGGATGGTGGCCGAAAAAGCGGGGTT
ACGCCAAGCAAGATGCCCGTGGCGACGAAATTGCAGCCGGCAGAAGTGCC
GACTGCTGGGGCATTGGCAGGGATGAATGTAGTGAAAGGTGTCGATGAGA
GGTCATCTCCTGACGGACATATAGGGTACGACGTGGAGTTATAGATGGCG
ATGGAGGCTGCGCGTGGTCTTGAGGCCGAGCTAGGCCTTACGCTAGATCA
ACTGCGAGACGCTGAAGCCAAGCTCTCAGATCAAGCTGAAGAAAACGCTC
GCCTCGGGGAGGAACTCCGTAGCGTGGAAGCACGGCTACACATGGCCTCC
GTGGCCCGCGCAGCACTTGTTAGCTTTTGCCGACAAGAGAGGACCGCGGT
AGAGCTCGACGCTGCGGAACACGTCGCCCGTGCGGAAGAGAGCGCGGCTA
TGCGCGGCGAGGAGGGGCTGGCCCAGGGCTTGGAGCTTGTGCGCGTAGCG
GAAGAAGCATGCGAAAAGAGAGTTGCGGCGGCGACCGAGGAGATGGATCG
ACTCGGAAAAGCGGTGTTCGCTGCGCGAGCGGAGCTCGCCGGCAGCAAGG
CGAGAGAACAGGCCGTGAGGAGAGAGCTGACGCGCGCTGCGGAAACCATC
GCCGCTTTCAGTCAACAAGAGTCGGTCGCTGGCGGCGCCCCTTCCGGGGA
GGTGGGTGTAGGCGAGACGGGAAAAAGCGCTAGGGATAGTGAGTCACTAA
GAGATCCTGTCTTCACTGTCGAGTCTGCTGGTTCTAATGCTGGAGTCAGG
GGTAGCGGTCGGGATCGGGGTCGAGATCCGGAGGTGGGCAGCGGTGGGTC
TGTTGCGAGGTCGTCGTTGTCATCAGAGGATGGTGGCCGAAAAAGCGGGG
TTACGCCAAGCAAGATGCCCGTGGCGACGAAATTGCAGCCGGCAGAAGTG
CCGACTGCTGGGGCATTGGCAGGGATGAATGTAGTGAAAGGTGTCGATGA
GAGGTCATCTCCTGACGGACATATAGGGTACGACGTGGAGTTATAG
back to top