mRNA_H-paniculata_contig9265.17055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: D7FZY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZY6_ECTSI) HSP 1 Score: 344 bits (883), Expect = 8.010e-115 Identity = 166/250 (66.40%), Postives = 189/250 (75.60%), Query Frame = 1 Query: 82 MPQSQAFDGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGAPSGERGAPLDPFEDGSLSRVGGWKWIEGAEGVNARNDSDGAYEAVVVEWLGEGQVVDNAARL 831 MP+ FDG VE+VEVHDEPIHRRQF+ND+ +IYIAGFRPGETSLWHRHSENTLY+CV + AALNRPTDKEPFVHHASPGDLWWAMSKS PYVHQVCLLPENTH S FFAMEILRPPP + AL+H CY LR EDSR G+ARVYD +L+PG+STG H+LGF GV+LCL+ +G G + A GG F G LS+VGGWKWI+G NARN Y+A VVEWLG G V+ +RL Sbjct: 1 MPKIAVFDGREVEYVEVHDEPIHRRQFSNDYVYIYIAGFRPGETSLWHRHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCLLPENTHNSHFFAMEILRPPP--TCSSRALDHRCYSLRGEDSRPGLARVYDFRLKPGESTGPHTLGFSGVVLCLS--DGGGSLEADGGV-----------FAGGELSKVGGWKWIDGPVSANARNAGGSVYQAFVVEWLGGGHSVEGVSRL 235
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A836CD60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD60_9STRA) HSP 1 Score: 190 bits (482), Expect = 1.460e-54 Identity = 101/244 (41.39%), Postives = 143/244 (58.61%), Query Frame = 1 Query: 82 MPQSQAFDGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQ------VCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGAPSGERGAPLDPFEDGSLSRVGGWKWIEGAEGVNARNDSDGAYEAVVVEWL 795 M + DG +++V VH+EP+H+ QF+N++ W Y G PG+ WHRHSE++ Y+ + + ALNRP D+ +VH D WW+M+K++P +HQ VCLL E + FFA+EIL+ PP +T L Y + E S+ ARVY L LEPGQSTG H F GV+L L+ GE + S G G+P F DG LS+ G +KW+EG + +N+ + Y+A+VVEWL Sbjct: 1 MTRMVTHDGEEIDYVSVHEEPMHKHQFDNEYVWCYRVGLEPGKMCKWHRHSEDSFYVALTDG-KALNRPCDRPEYVHPIKQFDQWWSMAKTSPIIHQARYLPQVCLLAECPIAADFFALEILKSPP--VTSDAPLNCPGYTVESEYSK-DKARVYQLSLEPGQSTGMHKWNFYGVVLSLSDGE---LSSEGDGSP----------FADGKLSKYGRFKWVEGPIEFSVKNEGEAVYKALVVEWL 227
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.290e-49 Identity = 95/238 (39.92%), Postives = 135/238 (56.72%), Query Frame = 1 Query: 82 MPQSQAFDGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGAPSGERGAPLDPFEDGSLSRVGGWKWIEGAEGVNARNDSDGAYEAVVVEWL 795 MP +G VE+VEV+DEPIH+ QF+N++ + YIA PGE+ +WHRHS+++ Y+ + + C A+NRPTDK + GD WW++ K+ VHQVCL P+ FF +E+L+ PP + L Y L + AR+YD+ L+PGQSTG H+ F +LCL+ GE + GA S PF L G +KW+EG + +N+ AY AVVVEW+ Sbjct: 1 MPTISILNGEEVEYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYVALAS-CEAINRPTDKPEGELNLKAGDKWWSLYKAKDMVHQVCLPGTCAAPAKFFGVEVLKSPP--VYSESPLGGNAYTL-LDQFTIDRARIYDMTLQPGQSTGMHTWNFFATVLCLSDGE-----LSTEGADS--------PFAFLGLRTYGQYKWVEGPVTFSVKNEGSAAYTAVVVEWV 221
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: UPI00166F5ED3 (hypothetical protein n=1 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI00166F5ED3) HSP 1 Score: 89.0 bits (219), Expect = 1.170e-16 Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 1 Query: 121 FVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLA 603 +V V DEP H +F NDF +Y F PGE+SL+HRH E+TLY+ V++A E VH G K P +H+V + T P E+ + P E+ A L+ + L S A R+Y +KLEPG++TG + GF G+ + ++ Sbjct: 24 YVGVADEPQHYHRFENDFVRVYDVRFAPGESSLYHRHDEDTLYVTVRDATIHDQTYQSDECQVHRIPAGLSLCRPHKGEPLIHRV--RNDGTGPMQMIGAEVKKLP--EIVAAEPLQAPFHTLLENLSGARRLRLYMIKLEPGETTGPVTYGFSGLTVSIS 180
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A7S4KS54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KS54_9EUKA) HSP 1 Score: 83.6 bits (205), Expect = 9.620e-15 Identity = 56/173 (32.37%), Postives = 87/173 (50.29%), Query Frame = 1 Query: 103 DGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLW-----WAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAG----ALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVIL 594 D + FVEV DEP H+ F N++ ++ A PG+TSL+HRHSENTLY+ + +A A + E H A G+++ + TP +H VC L + F +E+ + QA LE + +RRED + V++LK+E G+ H L G+++ Sbjct: 23 DQTIEHFVEVKDEPYHQEFFENEYTRVFYAKIPPGQTSLFHRHSENTLYIVLDDAKACDRIAGEHEINFHDAIRGEMFARTHVHPSGEHTPLIHAVCNL--GGEATNFLGIEV------KTQQASQTPPVLEESRGYMRREDLVSPSFSVFELKVEGGKELPEHPLPNRGLVV 187
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: UPI0015902AFA (hypothetical protein n=1 Tax=Martelella sp. HB161492 TaxID=2720726 RepID=UPI0015902AFA) HSP 1 Score: 80.9 bits (198), Expect = 8.700e-14 Identity = 70/231 (30.30%), Postives = 103/231 (44.59%), Query Frame = 1 Query: 121 FVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNA-----CAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAM--EILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGAPSGERGAPLDPFEDGSLSRVGGWKWIEGAEGVNARNDSDGAYEAVVVEW 792 FVEV DEP H +F ND+ +Y F PGETSL+HRH+ +T+Y+ V +A + T K HH + G P +H+V N + + E+L+ P EL L C+ S A R Y + LEPG++TG + GF G L ++I + V+ GG + + F GS W +G N + A+ A++ EW Sbjct: 26 FVEVFDEPRHYHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDASTGK---THHLTAGLSMCRPHGGDPLIHKV----RNDGDGLMHMIGAEVLKLP--ELVSDKPLSAPCHTQLDNLSGAERLRFYRIALEPGETTGEITYGFSG--LTVSISDANIAVAEPGGT------SRVVSFSPGSHI------WHDGPVTQMLTNVGETAFVAILGEW 233
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A2E4UR35_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UR35_9GAMM) HSP 1 Score: 80.1 bits (196), Expect = 9.690e-14 Identity = 57/180 (31.67%), Postives = 86/180 (47.78%), Query Frame = 1 Query: 121 FVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPT--DKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVIL-----CLAIGEGKGIVSAGG 639 +V V +EP HR +F N + +Y G+ +L+HRH+E+TLY+ + A A+L T +++ G ++ P +H+VC + + I +E+ PP A +H R E RA YD+KLE G STG F GV + CL IGEG+ +A G Sbjct: 9 YVPVRNEPRHRHRFENQWARVYDVLIPVGDATLYHRHTEDTLYVAI--AAASLRDQTWGEEDARTAEVEAGICICRPHRTRPLIHRVCNVGKGDMRMI--GVEVKDSPPETAANPLAADHVSMRWENERLRA-----YDVKLEAGDSTGVLDFSFSGVAIMLTPACLKIGEGEVWSAAAG 179
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A1Y1HK06_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK06_KLENI) HSP 1 Score: 77.8 bits (190), Expect = 1.000e-12 Identity = 65/223 (29.15%), Postives = 93/223 (41.70%), Query Frame = 1 Query: 82 MPQSQAFDGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEIL-------RPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGAPSGERGAPLDPFEDGSLSRVGGWKWIEG 729 MP + DGS +E+VE+ EP H F N Y +P +T+L+HRH +T Y + A+ D G L M +S VH+V EN + +E+L P P+L Q+ L + + I V+ L L PGQ+TG HS G + G ++ A G +PS PF G ++ G KW EG Sbjct: 1 MPIHKLADGSSIEYVEIEQEPRHHVLFQNSKVRCYDTLVKPSDTTLYHRHYNDTFYALIAGGHGAMQEAGDDFKDTVLEPQGTLA-LMCRSKELVHRVHFKAENKNAFHILGVELLPSGDSSDETPAPDLNQSALLRCGYTHVTKNVWPQII--VHKLTLPPGQTTGLHSYGSHCGVALFLTGAYLRVLEAEGSSPS--------PFSGGFVA-AGSVKWHEG 211
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A506UAT6_9HYPH (Uncharacterized protein n=1 Tax=Martelella alba TaxID=2590451 RepID=A0A506UAT6_9HYPH) HSP 1 Score: 76.3 bits (186), Expect = 3.480e-12 Identity = 57/179 (31.84%), Postives = 87/179 (48.60%), Query Frame = 1 Query: 121 FVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFV--HHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAM--EILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCLAIGEGKGIVSAGGGA 645 FVEV +EP H +F ND+ +Y F PGETSL+HRH+ +T+Y+ V +A + E HH + G S P +H+V N + + E+L+ P +L L C+ S A R Y + L+PG++TG + GF G L ++I + V+ GG+ Sbjct: 26 FVEVLNEPRHFHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDETTAKTHHLTAGLSMCRPHGSDPLIHKV----RNDGDGLMHMIGAEVLKLP--DLVSEKPLSAPCHTQLDNLSGAERLRFYRIALQPGETTGEITYGFSG--LTVSISDASVAVAEPGGS 196
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Match: A0A0G4G5J5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G5J5_9ALVE) HSP 1 Score: 74.7 bits (182), Expect = 1.880e-11 Identity = 49/165 (29.70%), Postives = 77/165 (46.67%), Query Frame = 1 Query: 106 GSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHSENTLYLCVQNACAALNRPTDKEPFVHHASPGDLWWAMSKSTPYVHQVCLLPENTHPSIFFAMEILRPPPPELTQAGALEHTCYRLRREDSRAGIARVYDLKLEPGQSTGWHSLGFMGVILCL 600 G E+VEV DEP H F N++C F G ++L+HRHS+++L++ + N + N PT + + G +A P +HQ+ L + H +EIL+PPP + AG L + R Y +K E G + GF G+++ L Sbjct: 12 GDLPEYVEVSDEPSHHTIFKNEYCIAIRVQFEKGHSTLFHRHSQDSLFVFLANI-SIHNNPTHRPAWDDSIQYGGAVFARHGVKPIIHQITALTGDMH---CLDIEILKPPPEDCKPAGPLTPEQAPGHVLEINKDRMRTYRVKAEKGGHVA-ATYGFCGLVIFL 171 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9265.17055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9265.17055.1 >prot_H-paniculata_contig9265.17055.1 ID=prot_H-paniculata_contig9265.17055.1|Name=mRNA_H-paniculata_contig9265.17055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp MPQSQAFDGSYVEFVEVHDEPIHRRQFNNDFCWIYIAGFRPGETSLWHRHback to top mRNA from alignment at H-paniculata_contig9265:2197..5488+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9265.17055.1 ID=mRNA_H-paniculata_contig9265.17055.1|Name=mRNA_H-paniculata_contig9265.17055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3292bp|location=Sequence derived from alignment at H-paniculata_contig9265:2197..5488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9265:2197..5488+ >mRNA_H-paniculata_contig9265.17055.1 ID=mRNA_H-paniculata_contig9265.17055.1|Name=mRNA_H-paniculata_contig9265.17055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig9265:2197..5488+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |