mRNA_H-paniculata_contig9260.17052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9260.17052.1
Unique NamemRNA_H-paniculata_contig9260.17052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9260.17052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9260contigH-paniculata_contig9260:5981..7695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size259
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.1427157-CDS-H-paniculata_contig9260:5980..61241622931153.1427157-CDS-H-paniculata_contig9260:5980..6124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 5981..6124 +
1691481614.366643-CDS-H-paniculata_contig9260:5980..61241691481614.366643-CDS-H-paniculata_contig9260:5980..6124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 5981..6124 +
1622931153.1577747-CDS-H-paniculata_contig9260:7582..76931622931153.1577747-CDS-H-paniculata_contig9260:7582..7693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 7583..7693 +
1691481614.3793714-CDS-H-paniculata_contig9260:7582..76931691481614.3793714-CDS-H-paniculata_contig9260:7582..7693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 7583..7693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9260.17052.1prot_H-paniculata_contig9260.17052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9260 5981..7693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9260.17052.1

>prot_H-paniculata_contig9260.17052.1 ID=prot_H-paniculata_contig9260.17052.1|Name=mRNA_H-paniculata_contig9260.17052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
KLVADARRRVRDQSNSQKEALDNDMALLREEKARLEAVNREVSRRSNQLK
EELKREAQRLSRTAEQNRLEMEKASRDLSRGQETC
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mRNA from alignment at H-paniculata_contig9260:5981..7695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9260.17052.1 ID=mRNA_H-paniculata_contig9260.17052.1|Name=mRNA_H-paniculata_contig9260.17052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1715bp|location=Sequence derived from alignment at H-paniculata_contig9260:5981..7695+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTCGTCGCCGATGCGCGGCGGAGAGTCAGAGATCAGTCCAACTCGCA
AAAAGAGGCTCTGGATAATGACATGGCTCTTCTCAGGGAAGAAAAAGCCA
GGCTGGAAGCTGTCAATCGCGAGGTCAGCCGCAGGAGTAATCAGGTGACG
AGGGCCTACTGACGAGTTACTCTTATACTTGTGCCTGCGTTTGTGTTTAC
TTTGAGTCCGCCTCAGCGTACTGGCGTGAAAACGCTACATGCTGTCAACA
TAGATCTCTCCCTCCCGCGCATGATAAAAAAACTGTTGAACAATGAGCGC
GGCTGACTACATATCCCATCTCACTTACAGTGGAACGAAATGGTTGAAGA
ATTTTGAGCTAGTTCTGGGCGAGTAACGATGAAGTTATTCGCAGCTTTAC
CCGAAATATGAAGTTATTTTACCTTACTTGGACTCCTGTTTATCCAATAT
CTATTGTCGTTTCGATGACTGCGCGTTAGGGTAATGTAGCCACCCCCAAC
CCAACCCTGATCCTAATCCTGACCCTTATATCCGTCCCTTCGCAGTGTCA
ATCCGGACCCGGTAGCGTCTATAATCAGCCAAACGCTGCGCCGCTCCGTG
GCGTCGCAACGACCAGAACCAAAGATCATATCGTGGCGGGACTGTCTCTC
TGCTTCACCATCGTAAAACGAAGTACTGCAGCAAACACAGGATATACCTT
GGAAAATAACTGGAGAAGTAAACTTTATTATGGAACAACTAAACTTTTTT
TAATTGTAAATGAAACTGTCATTCGATTGTGACAACGGCTACGCTAACCT
GTGTAGCTCGTGCTGGCTTATCCTTGACCCACGGACTTGCTGCGCTTGTT
CTTGAGGATTTACTTTAGTACAGACTTGAAAATCTGTTCCGAAATCACGA
CCACTAACTAATATCGTATTGATCACTGAGGAGACGCCAATCAACGACAT
GCAGTATTACGGGAACAAAAAAAGTATCCGGGAAGAGGCGGCTCTTAGCG
TGTTACAGTGTTAACGCCGTCGGATGCCCTGCATGGCGAGGTAATACGAC
TATACCGAGAATAGCCCAGCATGCCAGCGTCGTTTCGGGAGATGAAAATG
GAAAATCAACAGGAATAATGTCACGGAAGATGTTGAGACATTGTAACCAG
TATCCATGCAATCGCACGTGCTGTTTCTAAATATTCCGTTATTATATTTT
TTCCATTCTGCATACCGCTGTCGCCCCGAGGTCCATGAGCTATCGAAGGT
AAAGGTGAAAGGTGAAGAATACCGATGATAGAATATCGATATAGACTAAG
CAAAAATCCGACAAATCTTCAAGTCCATGACGACCAAATATGAGGCGGGA
GATGAAGAATATTCTCGCGTGCTGACTAAAAATATTCGAGTAATGATTTT
TTCCCACACATTCGTGCATTCATACGTATCTCAAAACGACGATAAAATGA
CAGGATCAAGAGCAAACTCAAGGGGGAGGAGACGATTGGAAAATACTCCG
GTACGAAAACGTGAAAATGTTTCAACGATAAATTCATGATCTAACCTGGA
CTGCCCTAACATCAATTAGCGCTGCCGCCCTCGCGTCCTGAATTGAATCA
AGTTGAAGGAGGAGCTGAAGCGTGAGGCGCAGCGCTTGTCCCGAACAGCA
GAGCAAAACCGCCTAGAGATGGAGAAGGCGTCGAGGGATCTCAGCCGGGG
GCAGGAGACTTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9260:5981..7695+

>mRNA_H-paniculata_contig9260.17052.1 ID=mRNA_H-paniculata_contig9260.17052.1|Name=mRNA_H-paniculata_contig9260.17052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig9260:5981..7695+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTCGTCGCCGATGCGCGGCGGAGAGTCAGAGATCAGTCCAACTCGCA
AAAAGAGGCTCTGGATAATGACATGGCTCTTCTCAGGGAAGAAAAAGCCA
GGCTGGAAGCTGTCAATCGCGAGGTCAGCCGCAGGAGTAATCAGAAGCTC
GTCGCCGATGCGCGGCGGAGAGTCAGAGATCAGTCCAACTCGCAAAAAGA
GGCTCTGGATAATGACATGGCTCTTCTCAGGGAAGAAAAAGCCAGGCTGG
AAGCTGTCAATCGCGAGGTCAGCCGCAGGAGTAATCAGTTGAAGGAGGAG
CTGAAGCGTGAGGCGCAGCGCTTGTCCCGAACAGCAGAGCAAAACCGCCT
AGAGATGGAGAAGGCGTCGAGGGATCTCAGCCGGGGGCAGGAGACTTGTT
TGAAGGAGGAGCTGAAGCGTGAGGCGCAGCGCTTGTCCCGAACAGCAGAG
CAAAACCGCCTAGAGATGGAGAAGGCGTCGAGGGATCTCAGCCGGGGGCA
GGAGACTTGT
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