mRNA_H-paniculata_contig9260.17051.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9260.17051.1
Unique NamemRNA_H-paniculata_contig9260.17051.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9260.17051.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.710e-25
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 2 
Query:  146 TVDEAQASEWRDRLSRLQADYEQRLSGLRRRESAVQTVEMKVRADIAKLSTERDQLKAGAVALTAEADALRSRTEEAAERQTSLESWQAGLGKREQAAEDLKKRSRELQEAERQASAREHASEQRLSAMREELTVKDDALKLLQADL 586
            ++ E++ ++WR RL R+QA++E+RLS ++ RE+AVQ  E++V     +L +ERD+L AGAVAL+AEAD LR+  ++AAER+  L  WQAGL KRE AAED+++RSR L+E ERQ           L  + E+L+VK+       ADL
Sbjct:  341 SLKESEVNDWRRRLERMQAEHERRLSAVQEREAAVQAAELRVEGRARELGSERDRLAAGAVALSAEADGLRAGAKDAAERERKLALWQAGLDKRELAAEDVRERSRHLEEMERQXXXXXXXXXXSLLLLEEQLSVKEKXXXXXXADL 487
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BLAST of mRNA_H-paniculata_contig9260.17051.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.580e-23
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 2 
Query:  146 TVDEAQASEWRDRLSRLQADYEQRLSGLRRRESAVQTVEMKVRADIAKLSTERDQLKAGAVALTAEADALRSRTEEAAERQTSLESWQAGLGKREQAAEDLKKRSRELQEAE 481
            ++ E++ ++WR RL R+QA++E+RLS +R RE AVQ  E++V     +L +ERD+L AGAVAL+AEAD LR+  ++AAER+  L SWQAGL KRE AAED+++RSR L+E E
Sbjct:  303 SLKESEVNDWRRRLERMQAEHERRLSAVREREVAVQAAELRVEGRARELGSERDRLAAGAVALSAEADGLRAGAKDAAERERKLASWQAGLDKRELAAEDVRERSRHLEEME 414
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9260.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJI0_9PHAE4.710e-2546.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ31_ECTSI2.580e-2354.46Viral A-type inclusion protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9260contigH-paniculata_contig9260:1878..5323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size593
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9260.17051.1prot_H-paniculata_contig9260.17051.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9260 2794..5323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.2615476-UTR-H-paniculata_contig9260:1877..20171622931153.2615476-UTR-H-paniculata_contig9260:1877..2017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9260 1878..2017 +
1691481614.3983874-UTR-H-paniculata_contig9260:1877..20171691481614.3983874-UTR-H-paniculata_contig9260:1877..2017Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9260 1878..2017 +
1622931153.280305-UTR-H-paniculata_contig9260:2671..27931622931153.280305-UTR-H-paniculata_contig9260:2671..2793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9260 2672..2793 +
1691481614.4109435-UTR-H-paniculata_contig9260:2671..27931691481614.4109435-UTR-H-paniculata_contig9260:2671..2793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9260 2672..2793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.2974303-CDS-H-paniculata_contig9260:2793..28881622931153.2974303-CDS-H-paniculata_contig9260:2793..2888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 2794..2888 +
1691481614.4219372-CDS-H-paniculata_contig9260:2793..28881691481614.4219372-CDS-H-paniculata_contig9260:2793..2888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 2794..2888 +
1622931153.3234248-CDS-H-paniculata_contig9260:4165..42951622931153.3234248-CDS-H-paniculata_contig9260:4165..4295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 4166..4295 +
1691481614.4331732-CDS-H-paniculata_contig9260:4165..42951691481614.4331732-CDS-H-paniculata_contig9260:4165..4295Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 4166..4295 +
1622931153.3402061-CDS-H-paniculata_contig9260:5218..53231622931153.3402061-CDS-H-paniculata_contig9260:5218..5323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 5219..5323 +
1691481614.4445-CDS-H-paniculata_contig9260:5218..53231691481614.4445-CDS-H-paniculata_contig9260:5218..5323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9260 5219..5323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9260.17051.1

>prot_H-paniculata_contig9260.17051.1 ID=prot_H-paniculata_contig9260.17051.1|Name=mRNA_H-paniculata_contig9260.17051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MKVRADIAKLSTERDQLKAGAVALTAEADALRSRTEEAAERQTSLESWQA
GLGKREQAAEDLKKRSRELQEAERQASAREHASEQRLSAMREELTVKDDA
LKLLQADLVA
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mRNA from alignment at H-paniculata_contig9260:1878..5323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9260.17051.1 ID=mRNA_H-paniculata_contig9260.17051.1|Name=mRNA_H-paniculata_contig9260.17051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3446bp|location=Sequence derived from alignment at H-paniculata_contig9260:1878..5323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTGTTTGCCGAACAACAGGCTGGCCTGCTGCAGATGGTCAGGGCCCA
AGAGGCCGAGCTTCGGCAGGGGAAGCAGCGAATCGGTTTGCTGGAGCAGC
AGCTGTCGGTGCTCAATGAAAAGCGGCCGGTACCAGGTATGCATATCCCG
CTTTCTTGCTTTTCGCGCGGCCTGTAGTATGATATCGGAGCGTGATCACC
ATGCGGCATCGATATGCCTCTCTATTTCCCCTTGTGAAGGACGACCGATA
ATACGTGTCATTCTGATTCTATCAGATGTTAAATGAATGGTGGCGCTATG
CTTTGACTTTCATGCTGTCGGTTTTGTCTATGATTTGCACATATCTTCAA
TGAAATCAAATCTTCAAGAATAGCGGATCACGGCGGGGAAAACTACCAAA
CTCGCCTTCTGTATGTCTTCTCTTTATCGTTGCTTTCCGCAGCACGAGGT
CCGACTGCATTGGGGTATACTGGAGCAATAGACCACTTACAAAAGCTCGA
TATTTTGGGGTATTTAAAACTGGATTGTATTCAGAGTCGGAGCCATTCGA
ATTCCGCCCAATGCCAGCTTTTGCTCATCGCAAGTGGCTTGTGTTAGGGG
TGAGACCTGCCGTAATTAGCAGGGCTTCTCTCCACTCCCGGTCAGCGGTA
GGAAAAATCATGACTCACTTGCCATTGGGGTTTCATCACTTCCCTGTTTA
TGGGAGGTTTGGAGGAGATATATGACTTGCTCTCGCGACGCCGTAACTAC
TGGCGTTGCTCCTGTAGGCTATTCCTCGGGCCGCGATGAAAAAGGACAAA
CTGTCGACGAGGCGCAGGCAAGCGAGTGGCGAGATAGGCTAAGCCGACTG
CAGGCTGACTATGAGCAGCGGCTGTCGGGGCTACGGCGGCGGGAGTCCGC
GGTTCAAACGGTGGAGATGAAAGTTCGGGCGGATATTGCCAAGCTTAGCA
CGGAGCGCGATCAACTGAAAGCCGGAGCCGTGGCTCTAACAGCCGAAGCC
GATGCCTTAAGGTTAGAGTGAATTTGCGGTCCCAATCTCTAGTACTGGAC
TGATCGAGACGGTGGTAATGGTGACCTCGTAATGTAACCACATGCAGGTC
AGTTTCGATGTGTTAAGAGTGGGACGAAAATATCAATGTGTGCCCATCAT
TATGAATTTCCATTTTCATCGGAATTTCATGGTGGCTGATTTCGAAGTGA
TGGAGGAAGTCATATGTGCCCATCGGCAGGCCACGGGTATGCTAGTGGCG
TACGTACCTAACTCGGGCAGAACCCCTCAAACTGTTCAGTCACGTGACGC
TTGGAAAAAGACACTATAGAGTTGATGGAGAATCGAAACCGTTCCGAGAG
GAACACCATCATAATCATATATGTGTTGTTTAGCAAGGATTTCGTTCGCT
TTGGGGTAAATCTTTACGAGCGGATATTGGGCCCGCAAGGGCGTCATCTG
TTCGTCGCACGATAGGTTCCTCAGGCGATATGGTTGAGGACCGGAGTGTG
TAGCTCCTCTATACCACGTCGGATTTGACCGTTTGTTCACATTGTCTGTA
TGCCCGTTGTTGATCACCATGATGAAATGATTAGACTGGGCGATCATATG
GCAGCAGCGCCCTTTGCGGTACCGTAGGTTACATGATATAACCCCCGTCC
GTTGATGTTGATGTTGATGTTGATGTTGATGAGGTTTTGGGGAGGAAAAC
TTATCATCAGGGGTGATTTCGGAAGGGGTGGTGTTATCTAACGTTTCTCC
CGCTGATATATTTTCGGTGCCAGAAGAAAGCAAACAAGCAAAATCACTCG
GGGTAGCATCCAGGGTGGGGTGGCATCTAACGTCATGAGTGTTAGTTGTG
TAACCGACGGTAGTGTAAAATATGTCGTGACTCATTTGAGAACGCCAAGC
ATGTCATTGCCCAAATAGATATTTTTTTATCGCACCACGTTGTGCCTGCC
TGCCTTTTTGTCAATATACTCGGAGTATGAAAGTGCATTGAAATCTGATT
ATTAGAGATTGTCACGTCGATCGATAATGCCACCTGCAGACGTCGCGGCT
GAAGCAATGCAAAAACCCCGTATTGCATATAGCTGTGCAAGCACTTGCAA
TTGTCCATACATCACATTTTCATCCTTAAAACATCACCGTGGCAGAGTTT
GTCCTCGCATCATCTCACACCCCGCCGTCCGCACTCCGCACACGGACACG
TGGTTTCCTTCCGTTTCTTTTCCCGCTGATGCTGTCGCCGTCCGATTTGG
TGGCATGACCGTCGGTGCACGACTCTCTGTGCGGCCAGATCACGGACAGA
GGAAGCTGCGGAGCGGCAGACATCACTGGAATCTTGGCAAGCTGGGCTGG
GAAAACGAGAACAAGCCGCCGAGGACCTGAAGAAACGCTCGAGGGAGCTG
CAAGAGGCCGAGAGACAGGTCTGGCACGTCAGTGAACTAATCAGAATCGT
TGATGGTCTTGTGGTGCGTTGCATTGTTCTCGACCTTGGTGGGACCTCGA
AAATGCGCATGGCAATCACAAGCGGGGCTTAAGACCCATCACACTTTTGC
GCAAGAGGAGATATAAAAGCTGTTGCTATGATAGAGTACAATAGGCTCAG
GCCCGTCGCCCTTTGAATATTGTACGCCGCGGATGAAGGTTGATGGAAGG
TCGATGAGTGCGTGGCATAAATTGGAAACGTGATAGCATGAGGGTCTTCG
GCGCCTTCCAAAACCTGTCGAATCGATCGAGTGAATGTCCTTTGCACCTT
CTAGGAATGTCTGATTGTGGAGCACGAGCGCACCCCTGCAGATTCTTGTA
CTACTGAGCATGAAAACGGACTAAAGCTTGGAGATTCTACGAAGGCGTCT
TTCGCCGGAAAATATAACCTTCATCCAGGCTGTGGAATAGTGTATATAAG
ATGTACCCCAGTTTAAGGCTGGTCAAGTTGGCATTGTATGCTCCATGAGA
TTCTCATGTACAGAATAGGTTAGCGCGGTGTAACTCGGACCGGAATTCAA
GGTAGCCGTTTCTGGTGTGCCGGATGCATACCCGCAGCTTAAATTGGGAT
ATCAGCTGTATTGGGCTTCGCCCCGTTCTTCAAGTGGCTCTGTTGTGTTG
CTGATCATGTAATCCAGGCACGTGCACATGACATCACGACAGCTCACGCA
GAGCACAGGCTCGATAGATACATACCATTGGCAGTAGTAGCAGCAGCAAC
AAGAGTTGCGTGGTTTTGTGACATCCGAAATGTCCTAGGAGCGGACTCGA
AGAATGTTTCGCAATATTTTTCTCGGCATTTAGTTGATTCATGCTGATGT
GACATCAATAGTCCTGTGTGTTTGGGTATTTGGCCCGGCAGGCAAGCGCT
CGGGAACACGCAAGCGAGCAGCGCCTTTCCGCGATGAGAGAGGAGCTTAC
CGTGAAAGACGACGCGCTCAAACTTCTCCAAGCCGACCTTGTAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9260:1878..5323+

>mRNA_H-paniculata_contig9260.17051.1 ID=mRNA_H-paniculata_contig9260.17051.1|Name=mRNA_H-paniculata_contig9260.17051.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig9260:1878..5323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGTTCGGGCGGATATTGCCAAGCTTAGCACGGAGCGCGATCAACT
GAAAGCCGGAGCCGTGGCTCTAACAGCCGAAGCCGATGCCTTAAGATGAA
AGTTCGGGCGGATATTGCCAAGCTTAGCACGGAGCGCGATCAACTGAAAG
CCGGAGCCGTGGCTCTAACAGCCGAAGCCGATGCCTTAAGATCACGGACA
GAGGAAGCTGCGGAGCGGCAGACATCACTGGAATCTTGGCAAGCTGGGCT
GGGAAAACGAGAACAAGCCGCCGAGGACCTGAAGAAACGCTCGAGGGAGC
TGCAAGAGGCCGAGAGACAGATCACGGACAGAGGAAGCTGCGGAGCGGCA
GACATCACTGGAATCTTGGCAAGCTGGGCTGGGAAAACGAGAACAAGCCG
CCGAGGACCTGAAGAAACGCTCGAGGGAGCTGCAAGAGGCCGAGAGACAG
GCAAGCGCTCGGGAACACGCAAGCGAGCAGCGCCTTTCCGCGATGAGAGA
GGAGCTTACCGTGAAAGACGACGCGCTCAAACTTCTCCAAGCCGACCTTG
TAGCGGCAAGCGCTCGGGAACACGCAAGCGAGCAGCGCCTTTCCGCGATG
AGAGAGGAGCTTACCGTGAAAGACGACGCGCTCAAACTTCTCCAAGCCGA
CCTTGTAGCG
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