mRNA_H-paniculata_contig9260.17050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9260.17050.1 vs. uniprot
Match: D7FZ31_ECTSI (Viral A-type inclusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ31_ECTSI) HSP 1 Score: 79.0 bits (193), Expect = 1.150e-15 Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 Query: 1 ALRNACVGAASSTAELLGGDDPTGFAQEVRALAEAHARELEEAMAHEEEGDGSI 162
ALRNACVGAASSTAELLGG+DPTGFAQEVRALA AH +ELE+AM + EG +
Sbjct: 165 ALRNACVGAASSTAELLGGEDPTGFAQEVRALANAHEKELEQAMVEDMEGQSDL 218
BLAST of mRNA_H-paniculata_contig9260.17050.1 vs. uniprot
Match: A0A6H5KJI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI0_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 1.570e-15 Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 1 Query: 1 ALRNACVGAASSTAELLGGDDPTGFAQEVRALAEAHARELEEAMAHEEEG 150
ALRNACVGAASSTAELLGG+DPTGFAQEVRALA AH +ELE+A+ ++EG
Sbjct: 163 ALRNACVGAASSTAELLGGEDPTGFAQEVRALANAHEKELEQALVEDKEG 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9260.17050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9260.17050.1 >prot_H-paniculata_contig9260.17050.1 ID=prot_H-paniculata_contig9260.17050.1|Name=mRNA_H-paniculata_contig9260.17050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp ALRNACVGAASSTAELLGGDDPTGFAQEVRALAEAHARELEEAMAHEEEGback to top mRNA from alignment at H-paniculata_contig9260:1527..1712+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9260.17050.1 ID=mRNA_H-paniculata_contig9260.17050.1|Name=mRNA_H-paniculata_contig9260.17050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig9260:1527..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9260:1527..1712+ >mRNA_H-paniculata_contig9260.17050.1 ID=mRNA_H-paniculata_contig9260.17050.1|Name=mRNA_H-paniculata_contig9260.17050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig9260:1527..1712+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |