mRNA_H-paniculata_contig926.17049.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: A0A6H5KN60_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN60_9PHAE) HSP 1 Score: 365 bits (938), Expect = 3.380e-118 Identity = 188/308 (61.04%), Postives = 225/308 (73.05%), Query Frame = 3 Query: 330 TVAAYRGGISEELMEAVAGQDVADRGRMVAAKWQGNGPDPLGDS-QLRASDFA-VAAAAAGVAGSVEERTKPFDHPGLEVWMNGPFQAPVPMGPVDIIHVDDDIVVMNKPSGLLCVPGRIEKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
++++ GG + A + ++ W GNGPDP+ + ++R A + AA G G + E+W+NGPF APVP GP+DI+ VD++IVV NKPS LLCVPGRIEKDS+ATR ALELGHYRVD+M+VHRLDMATSG V+MAR+DAALK L N+ FRER + K Y+AMVHGVL A+EGEVDLP+CRN CPPLHMVN E GKP+LT+WRV+ RAADRTRV L+PVSGRSHQLRLHM+AI HPILGDHFYG K+SL LADRCLLHA TL L HP TGER FTAPC+F
Sbjct: 35 SISSCNGGTRVHVATTAAATNEVREVQVEERPWLGNGPDPMASTGKIRPGTSASLGAAVVGEPGGKGKGVA-----AEEMWLNGPFNAPVPPGPLDILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDL-------NRQFRERQVRKRYVAMVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLERAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTKDSLDLADRCLLHAHTLCLRHPKTGERTMFTAPCEF 330
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: D8LR37_ECTSI (Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR37_ECTSI) HSP 1 Score: 352 bits (902), Expect = 6.480e-114 Identity = 169/230 (73.48%), Postives = 194/230 (84.35%), Query Frame = 3 Query: 558 EVWMNGPFQAPVPMGPVDIIHVDDDIVVMNKPSGLLCVPGRIEKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
E+W+NGPF APVP GP++I+ VD++IVV NKPS LLCVPGRIEKDS+ATR ALELGHYRVD+M+VHRLDMATSG V+MAR+DAALK L N+ FRER + K Y+A+VHGVL A+EGEVDLP+CRN CPPLHMVN E GKP+LT+WRV+ RAADRTRV L+PVSGRSHQLRLHM+AI HPILGDHFYG +SLALA RCLLHA TL L HP TGER FTAPC+F
Sbjct: 34 EMWLNGPFNAPVPPGPLEILFVDEEIVVCNKPSDLLCVPGRIEKDSLATRAALELGHYRVDRMIVHRLDMATSGCVIMARTDAALKDL-------NRQFRERQVRKRYVAIVHGVLWADEGEVDLPLCRNRGCPPLHMVNFEHGKPSLTKWRVLDRAADRTRVELIPVSGRSHQLRLHMNAIGHPILGDHFYGTTDSLALAGRCLLHAHTLCLRHPKTGERTMFTAPCEF 256
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: A0A836CD05_9STRA (Pseudouridylate synthase, 23S RNA-specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD05_9STRA) HSP 1 Score: 221 bits (562), Expect = 5.740e-64 Identity = 113/221 (51.13%), Postives = 147/221 (66.52%), Query Frame = 3 Query: 600 GPVDIIHVDDDIVVMNKPSGLLCVPGRIEKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGR-----AADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
GPVD+++ DD I+V NKPSGLL VPG KD + +RVA++ G R+DKMVVHRLD ATSG+V+ AR+D AL++LH+ FR R + K Y A+V+G ++ + GEV P+ ++ PPL +++ GKP T W V+ R AD TRVAL PV+GRSHQLRLHM + HPILGD Y + + ALA RCLLHA TL HP TGE +F P +F
Sbjct: 14 GPVDVVYSDDHIIVCNKPSGLLSVPGITLKDCLVSRVAVKFGQARIDKMVVHRLDQATSGLVLFARTDEALRALHED-------FRLRRVSKCYEAVVYGSVAGDSGEVTEPMRKDMDNPPLQLIDHVQGKPCQTLWSVLSRETRGGGADATRVALTPVTGRSHQLRLHMQVLGHPILGDDLYAHAAARALAPRCLLHARTLRFRHPATGEDLSFEVPPEF 227
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: UPI000371F359 (RluA family pseudouridine synthase n=1 Tax=Kordiimonas gwangyangensis TaxID=288022 RepID=UPI000371F359) HSP 1 Score: 207 bits (528), Expect = 3.950e-59 Identity = 113/220 (51.36%), Postives = 147/220 (66.82%), Query Frame = 3 Query: 594 PMGPVDIIHVDDDIVVMNKPSGLLCVPGRIEK--DSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
P P+DIIHVDDDI+V+NKP+GLL VPGR E+ D +ATR E R+ VHRLDM TSGV++MAR AL+ L +Q F +R KVY A+++G L+ +EGEVDLP+ + P H V+ E GKPA T+++V+ R TRVAL PV+GRSHQLR+HM ++ H I+GD+ Y E+ LADR LHA LT++HP +GE TFTAP F
Sbjct: 12 PNVPLDIIHVDDDILVLNKPNGLLSVPGRTEEKFDCLATRAEAEFTGVRI----VHRLDMETSGVIIMARHMDALRHLGRQ-------FEDRKTDKVYEALIYGNLARDEGEVDLPLLVDWPNRPKHRVDFENGKPAFTRYKVIERTEKTTRVALYPVTGRSHQLRVHMLSLGHAIIGDNLYAEGEAFTLADRLCLHARELTVTHPESGESLTFTAPVPF 220
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: A0A2G4YMN5_9PROT (RNA pseudouridine synthase n=1 Tax=Paremcibacter congregatus TaxID=2043170 RepID=A0A2G4YMN5_9PROT) HSP 1 Score: 202 bits (514), Expect = 3.670e-57 Identity = 108/225 (48.00%), Postives = 146/225 (64.89%), Query Frame = 3 Query: 579 FQAPVPMGPVDIIHVDDDIVVMNKPSGLLCVPGRIE--KDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
F+ P P+ ++H D DIVV+NKPSGLL VPGR E KDS++ RV + VVHRLDM TSG++VMA + A + + Q F +R K Y+A +HG ++ EEGE+DLP+ + P HMV+ E GK ALT+W+++ R TRVA PV+GR+HQLR+H AI HPILGD Y +E+L +ADR LLHAE LT++HP + E+ TF+ P +F
Sbjct: 3 FEYAPPTTPLQVLHQDKDIVVLNKPSGLLSVPGRQEHMKDSLSLRVQAQFP----TATVVHRLDMDTSGIIVMALNIEAHRHISMQ-------FEKRYTEKSYIAHLHGAVADEEGEIDLPLILDWPNRPHHMVDHENGKQALTRWKILARGDGFTRVAFYPVTGRTHQLRVHSQAIGHPILGDTLYATEEALKMADRLLLHAEVLTITHPYSKEKMTFSTPAEF 216
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: A0A371RL31_9PROT (RNA pseudouridine synthase n=1 Tax=Parvularcula marina TaxID=2292771 RepID=A0A371RL31_9PROT) HSP 1 Score: 202 bits (513), Expect = 5.280e-57 Identity = 106/234 (45.30%), Postives = 146/234 (62.39%), Query Frame = 3 Query: 546 HPGLEVWMNGPFQAPVPMGPVDIIHVDDDIVVMNKPSGLLCVPGRIEKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
HP E W+ D+++ DD ++V+NK +GLL VPG + +DS+ TR A G+ +V HRLDMATSGV+VM R L ++ Q F +R K Y+A+V G ++ ++G VDLP+ + PL M+ E G+PA+T W V+ R D+TR+AL P++GRSHQLRLHM + HPILGD +Y + E+ A + R LLHAE LTL+HP GER +FTAPC F
Sbjct: 8 HPPTEPWL-------------DVLYGDDALIVLNKQAGLLSVPGNVSRDSLETRAAERFGN----TLVAHRLDMATSGVIVMPRGKENLAAVGLQ-------FEKRQTEKRYIAVVWGDVAEDKGTVDLPIRCDWPNRPLQMICHERGRPAVTHWEVLTREGDKTRLALTPITGRSHQLRLHMKELGHPILGDEWYADGEARAASPRLLLHAEVLTLTHPANGERMSFTAPCPF 217
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: V4N4Z6_9CAUL (Pseudouridine synthase n=1 Tax=Asticcacaulis sp. YBE204 TaxID=1282363 RepID=V4N4Z6_9CAUL) HSP 1 Score: 191 bits (485), Expect = 3.870e-53 Identity = 107/213 (50.23%), Postives = 141/213 (66.20%), Query Frame = 3 Query: 615 IHVDDDIVVMNKPSGLLCVPGRI--EKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
++ DD ++V +KP+GLL VPGR+ KDS+A RV D ++VHRLDMATSG++VMAR A ++L + +F ER + K Y+A+V G + EEGEVDLP+ + P M++ +GKP+LT++RV+ R ADRTRV L PV+GRSHQLR+HM A+ HPI+GD FY E AL+ R LHAE L L HPVTGE F AP F
Sbjct: 4 LYEDDALLVFDKPAGLLSVPGRLPENKDSLAPRVQA----IWPDALIVHRLDMATSGLIVMARGAEAHRTL-------SIAFAERRVHKRYVAVVAGQVRDEEGEVDLPLITDWPNRPKQMIDYTIGKPSLTRYRVIAREADRTRVELEPVTGRSHQLRVHMMALGHPIIGDVFYAPTEIQALSSRLWLHAERLDLPHPVTGEALRFEAPAAF 205
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: UPI001FF16DFA (RluA family pseudouridine synthase n=1 Tax=Kordiimonas sp. A6E486 TaxID=2872312 RepID=UPI001FF16DFA) HSP 1 Score: 191 bits (486), Expect = 4.180e-53 Identity = 105/216 (48.61%), Postives = 143/216 (66.20%), Query Frame = 3 Query: 606 VDIIHVDDDIVVMNKPSGLLCVPGR--IEKDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
+DI++ DDD++V+NKPSGLL VPGR ++DS+A R + +R VVHRLDM TSG++VMA + A + + +Q F ER K Y+A+V G L +EGE+DLP+ + P H+V+ E GK A+T++RV+ R DRTRV+L P++GRSHQLR+HM ++ HPILGD Y E +A+A R LHA L L+HPVTG R TF DF
Sbjct: 14 LDIVYKDDDLIVLNKPSGLLSVPGRGRAKRDSLAWRTQKD---HRT-ATVVHRLDMETSGIMVMALNMEAHRHISRQ-------FEERQTEKTYIAVVGGDLETDEGEIDLPLIVDWPNRPKHIVDHETGKKAVTRYRVLDRLGDRTRVSLHPITGRSHQLRVHMQSLGHPILGDTLYATPEQVAMAPRLQLHATELVLTHPVTGARLTFEVAPDF 218
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: UPI00048E6573 (pseudouridine synthase n=1 Tax=Terasakiella pusilla TaxID=64973 RepID=UPI00048E6573) HSP 1 Score: 191 bits (484), Expect = 8.090e-53 Identity = 102/222 (45.95%), Postives = 148/222 (66.67%), Query Frame = 3 Query: 594 PMGPVDIIHVDDDIVVMNKPSGLLCVPGRIE--KDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADR--TRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
P P+++++ D++++V+NKP+GLL VPGR + KDS+ +RV G +VVHRLDM TSG +VMA K H+ S K F +T+ K Y+ +V G+++ EEG+VDLP+ + PL MV+ E+GK ALT+WRV+ R + TR+AL PV+GRSHQLR+H ++ HPILGD FY + ++ + R LHAE L+ HP+TG+R +F APC+F
Sbjct: 8 PADPLEVLYRDENLIVLNKPAGLLSVPGRAQDHKDSLQSRVEAAYG----GALVVHRLDMDTSGAIVMAFD----KETHRHLS---KQFEIKTVTKEYVCLVDGLVADEEGQVDLPLRCDWPNRPLQMVDTELGKKALTRWRVLTRREEEAVTRLALTPVTGRSHQLRVHCLSLGHPILGDRFYAPQSVISKSARLCLHAEMLSFDHPMTGKRLSFMAPCEF 218
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Match: UPI00177CCD4D (RluA family pseudouridine synthase n=1 Tax=Rhizobium sp. CFBP 8762 TaxID=2775279 RepID=UPI00177CCD4D) HSP 1 Score: 189 bits (481), Expect = 2.460e-52 Identity = 110/230 (47.83%), Postives = 145/230 (63.04%), Query Frame = 3 Query: 567 MNGPFQAPVPMGP-VDIIHVDDDIVVMNKPSGLLCVPGRIE--KDSIATRVALELGHYRVDKMVVHRLDMATSGVVVMARSDAALKSLHQQASERNKSFRERTIGKVYLAMVHGVLSAEEGEVDLPVCRNTACPPLHMVNAEMGKPALTQWRVVGRAADRTRVALVPVSGRSHQLRLHMDAISHPILGDHFYGNKESLALADRCLLHAETLTLSHPVTGERRTFTAPCDF 1247
+N P P P+ P + IIH D DI+V++KPSGLL VPGR DS+A+RV +++HRLD TSGVVVM+ + A ++ Q F +R K Y+A+V G L + G++DLP+ +T P H V+ + G+PA T+WRV+ R DRTRV L P++GR+HQLR+HM AI HPILGD FY ++ +LA ADR LLHAETL HP G TFT PC F
Sbjct: 6 LNNPVYNP-PLEPYISIIHQDADILVLDKPSGLLSVPGRDPALSDSLASRVQRRFP----TALMIHRLDKDTSGVVVMSLNRKAHATVASQ-------FEQRLTEKSYVAVVSGQLVGDSGQIDLPLAIDTNNKPRHRVDHDNGRPAQTEWRVLAREEDRTRVKLSPLTGRTHQLRVHMKAIGHPILGDAFYADEAALAAADRLLLHAETLRFRHP-DGRDVTFTVPCPF 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig926.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig926.17049.1 >prot_H-paniculata_contig926.17049.1 ID=prot_H-paniculata_contig926.17049.1|Name=mRNA_H-paniculata_contig926.17049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=395bp MSPQPSAVTVSLAPLYTHMRCIVVLTAAACSNCNAFITTRSISHNVLLSSback to top mRNA from alignment at H-paniculata_contig926:21943..30323- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig926.17049.1 ID=mRNA_H-paniculata_contig926.17049.1|Name=mRNA_H-paniculata_contig926.17049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8381bp|location=Sequence derived from alignment at H-paniculata_contig926:21943..30323- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig926:21943..30323- >mRNA_H-paniculata_contig926.17049.1 ID=mRNA_H-paniculata_contig926.17049.1|Name=mRNA_H-paniculata_contig926.17049.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2370bp|location=Sequence derived from alignment at H-paniculata_contig926:21943..30323- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |