mRNA_H-paniculata_contig9259.17047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9259.17047.1
Unique NamemRNA_H-paniculata_contig9259.17047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9259.17047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9259contigH-paniculata_contig9259:7297..8951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size208
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9259.17047.1prot_H-paniculata_contig9259.17047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9259 7297..8951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.2619042-CDS-H-paniculata_contig9259:7296..73501622931152.2619042-CDS-H-paniculata_contig9259:7296..7350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 7297..7350 +
1691481613.8213058-CDS-H-paniculata_contig9259:7296..73501691481613.8213058-CDS-H-paniculata_contig9259:7296..7350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 7297..7350 +
1622931152.2779517-CDS-H-paniculata_contig9259:7846..79461622931152.2779517-CDS-H-paniculata_contig9259:7846..7946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 7847..7946 +
1691481613.831456-CDS-H-paniculata_contig9259:7846..79461691481613.831456-CDS-H-paniculata_contig9259:7846..7946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 7847..7946 +
1622931152.291463-CDS-H-paniculata_contig9259:8898..89511622931152.291463-CDS-H-paniculata_contig9259:8898..8951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 8899..8951 +
1691481613.8414714-CDS-H-paniculata_contig9259:8898..89511691481613.8414714-CDS-H-paniculata_contig9259:8898..8951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9259 8899..8951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9259.17047.1

>prot_H-paniculata_contig9259.17047.1 ID=prot_H-paniculata_contig9259.17047.1|Name=mRNA_H-paniculata_contig9259.17047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
TRPSSLGDSQAVREDMKTVGRDCTTWPPKHYGTIFQTVRGRCGTSYTRST
TGTRKNMEHFRQACKMQT*
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mRNA from alignment at H-paniculata_contig9259:7297..8951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9259.17047.1 ID=mRNA_H-paniculata_contig9259.17047.1|Name=mRNA_H-paniculata_contig9259.17047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1655bp|location=Sequence derived from alignment at H-paniculata_contig9259:7297..8951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGACCTTCCTCGCTGGGCGACTCACAAGCTGTTCGGGAAGACATGAA
AACAACAAGTACATCTTGTACGTGGTACCTCGAATTGTAGTTTACTTGTA
GTTTACCTGATTGAACTGCCATAGTCATATTCATGCACGACGAATGCAGT
TGATGGTACGGGAGTACTGTCGCAGGTGTATGGAGCGGTACGTCATCCGC
CATACACGGATTGTACCTGCGTACCCGTCGATGTGGAGACATGAATATCC
TATGTCTCTTCCTTACTCAATCGTGCTCGAAATGTATCCAACCTATGTGT
GCACTATCGTGCTTAATGTGATTTGACCCCACTGGAGGCCAAAGGGTTAA
CAATCCTACAGACTGTGTTTATGCGGCATAACGATCCTCGTCTGTCCAAT
CTGTCCCTGCCTGCCCGTTCGAAAACTTGAAATATGCAATTAGCGCGGCG
CGTATGATATACGAGCAGTGTCGCTCATTGTCTGCCAGGCTTCCAATTTC
ATGTCAGCCAGCAGCCTGCCCTATATAAGCGGTATTCTTACCCGCTGCAG
GTGGGTAGAGACTGTACGACGTGGCCTCCGAAGCACTATGGCACTATTTT
TCAGACTGTGCGCGGGAGGTGCGGAACGTCATACACCCGATCTACGACAG
GTGAGGCACGCCTGTCCCACAAACATTTGACACAATTTTTTGGGGTCGGT
TTGAAGGAAAAATCCAGGACTGGACACAGTAAAACAACCATCACCATTTA
CCGCGCTCGATGGTACGGGAACGGTAACCGTTTGTTACCGCCATTGCTTA
GCTTTCACCGTACCGATATTTGATCGTGCCGGTGGCTCACCGTCCGTACG
TTACCCTGATATTTTCCTGACCGTTTACAGTTCCATGGATTACCTTGCCG
GCGGCAAACCGCCCATATGTTGCGGTGCCGGCCCCGTGATTCCATACCAT
GGAAGGTACCTGTCAGTACATGTACCGATTGCGAGTACATGTCATTAAAC
ACTCAAAATCCCGCTTCCAGACTGAATGTCACCTTCAAATTCAAAATCTT
TCCGTATGACTTTTTTTTTTTCTTCTTTATTTTCGGTGCTATTATTGCTC
TCCACAAAAATTTGTCATATGGATTATTGATGCAACCACTCATTCTTGAG
TACCGCCACAATGACATCGACCTCATTTATTGGCCACGCGGTTTGTTTTC
CCAAACTTCCCCGTGCCGCCAACGGAGAAACGGTCGTGTATAACCGCGCC
TGCGACCAGTATACCGTGTGTTACAGTTCAGGCCCACTTTTAGCACTTCA
TACCGTTAAGGCCACCATTCGCCTTTTCCGCACCGTGAAAAATTGCATTG
CAAACGCCCCTCCGATAAACGTGGCGCTCCACCCAAGCTTCACCGTGGCA
AATCTCGTACAATTTGACCGCATCATTATTTAACGCCCTTTCAATGGTTT
TACCGTTCAATCCCGTTTTCGTAAATCGTTACCGTGCCCAGCCCTCGAAC
AATATTGGCCAAATACGTGTACCCCGCGCGGCGCCAGGGACAAAATGAAA
TGACCCTTGTGCGCAATACTCCGGGTCCCTCTATTTCCCTCCATCCGCTC
AGGTACACGCAAGAATATGGAGCATTTCCGTCAGGCATGCAAAATGCAGA
CATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9259:7297..8951+

>mRNA_H-paniculata_contig9259.17047.1 ID=mRNA_H-paniculata_contig9259.17047.1|Name=mRNA_H-paniculata_contig9259.17047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig9259:7297..8951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGACCTTCCTCGCTGGGCGACTCACAAGCTGTTCGGGAAGACATGAA
AACAACTAGACCTTCCTCGCTGGGCGACTCACAAGCTGTTCGGGAAGACA
TGAAAACAGTGGGTAGAGACTGTACGACGTGGCCTCCGAAGCACTATGGC
ACTATTTTTCAGACTGTGCGCGGGAGGTGCGGAACGTCATACACCCGATC
TACGACAGGTGGGTAGAGACTGTACGACGTGGCCTCCGAAGCACTATGGC
ACTATTTTTCAGACTGTGCGCGGGAGGTGCGGAACGTCATACACCCGATC
TACGACAGGTACACGCAAGAATATGGAGCATTTCCGTCAGGCATGCAAAA
TGCAGACATAAGTACACGCAAGAATATGGAGCATTTCCGTCAGGCATGCA
AAATGCAGACATAA
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