mRNA_H-paniculata_contig9254.17044.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: D7FXE1_ECTSI (WD repeat-containing protein 60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE1_ECTSI) HSP 1 Score: 150 bits (380), Expect = 4.900e-39 Identity = 94/194 (48.45%), Postives = 113/194 (58.25%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVST-DEGGSQTDLGLSPGGRVRLTMSKSIHVGH-------------------SFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFR-----ASRRACGDPCWSG--------GVTCLSFSPFFIKHFLAGCSDGSVRLY 483 +ASLD RG V IWL +EV DEGGSQTDLGLSPGGRVRL +SK++ G S +T T R +D++ D + +A + A LAFSP DPNRF++G+S RV H SRLG PPPPRA+ RR G +G GVTCL+FSPFF K+FLAGC DGSVRLY Sbjct: 873 VASLDDRGTVSIWLASEVPRGDEGGSQTDLGLSPGGRVRLALSKALRPGDQPSLAAAVRPRGGGGAVPVSVPRFSTSTRNR---LDQTTDTTASSAAAGS--ARALAFSPEDPNRFLIGDSSDRVTHASRLGKPPPPRAYGPPRRPGERRLDGXXXGTGEEREGAMGGVTCLAFSPFFPKYFLAGCGDGSVRLY 1061
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: A0A7S3XQJ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ7_HETAK) HSP 1 Score: 112 bits (279), Expect = 1.660e-25 Identity = 70/169 (41.42%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVSTDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMR-AGDSADTIV-----AHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKV 489 IA+LD RGV+ +WL+TE+ E G +DLGLS G+ RL +S+++ + S L +P +S G R A AD + A +LAF P DPNRF+ S G + +R G+ PPP FRA V CL FSPF +FLAGC DGSVRLY + Sbjct: 364 IATLDDRGVLALWLVTELEKVELGGSSDLGLSINGQTRLVLSRTLSLDPSIEDL-------NPNKQKSTSGRRTAKTEADASLTPGPCAQSLAFYPKDPNRFIATLSDGSIMQHTRFGNCPPPHHFRAPITFGSFENAPVPVLCLDFSPFLPDYFLAGCMDGSVRLYTI 525
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: F7CGQ3_MONDO (Uncharacterized protein n=5 Tax=Didelphinae TaxID=126287 RepID=F7CGQ3_MONDO) HSP 1 Score: 103 bits (257), Expect = 1.620e-22 Identity = 61/167 (36.53%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEV-STDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD G + IW++ E+ +D GSQ+DLGL PGG+++L S +I + +SF++ ++ + T+ T+ F PSDPNRFV+G G + H +R P+ F+ +R P VT + FSPF FLAGCSDGS+RL+++ ++ Sbjct: 825 IASLDENGTLNIWVVVELPKSDFAGSQSDLGLIPGGKIKLVHSSTIQLNNSFSS-------------------KSNTNLGTMQTLTVKFLPSDPNRFVIGTDMGVISHGARHDSKVSPKLFKPQQRE-ERPV---KVTVIDFSPFGDPMFLAGCSDGSIRLHQLTSE 968
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: UPI001301E3A4 (WD repeat-containing protein 60 isoform X3 n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=UPI001301E3A4) HSP 1 Score: 102 bits (255), Expect = 2.760e-22 Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVS-TDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD G++ IW++ E+S D GSQ+DLGL PGG+++L S +I + SF P ++ S M+ T++ + F PSDPNRF++G G + H +R P+ F+ +R P VT + FSPF FLAGCSDGS+RL+++ ++ Sbjct: 400 IASLDENGILNIWVVVELSKADFAGSQSDLGLIPGGKIKLVHSSTIQLNSSFP----------PKVNTSLKPMQ------TLI---VKFLPSDPNRFIIGTDMGVISHGARHDSKVSPKLFKPQQRE-ERPV---KVTVIDFSPFGDPMFLAGCSDGSIRLHQLNSE 543
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: G3WJI9_SARHA (Dynein 2 intermediate chain 1 n=2 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WJI9_SARHA) HSP 1 Score: 102 bits (255), Expect = 3.010e-22 Identity = 63/167 (37.72%), Postives = 94/167 (56.29%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVS-TDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD G++ IW++ E+S D GSQ+DLGL PGG+++L S +I + SF P ++ S M+ T++ + F PSDPNRF++G G + H +R P+ F+ +R P VT + FSPF FLAGCSDGS+RL+++ ++ Sbjct: 819 IASLDENGILNIWVVVELSKADFAGSQSDLGLIPGGKIKLVHSSTIQLNSSFP----------PKVNTSLKPMQ------TLI---VKFLPSDPNRFIIGTDMGVISHGARHDSKVSPKLFKPQQRE-ERPV---KVTVIDFSPFGDPMFLAGCSDGSIRLHQLNSE 962
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: UPI0010FAA9CF (WD repeat-containing protein 60 n=1 Tax=Scleropages formosus TaxID=113540 RepID=UPI0010FAA9CF) HSP 1 Score: 100 bits (248), Expect = 2.610e-21 Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEV-STDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLA--FSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 +ASLD +GV+ +W++ E+ D+ GSQ DLGL PGG+V+L +S SI T+ R P GDS D H+L F PSD N F + S G V H +R G PPR ++ RA G VT L FSPF FL GC D +VRL+ V T+ Sbjct: 785 LASLDEKGVLNLWVVVELPQADQAGSQNDLGLKPGGKVKLLLSSSII-----------TLERLSP----------GDSTDVGPVHSLLLKFLPSDSNHFFIATSTGLVAHGTRHGPRRPPRFYKP--RAAGPT--PSRVTSLDFSPFGEPLFLVGCDDSTVRLHSVATE 928
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: H0WY81_OTOGA (WD repeat domain 60 n=2 Tax=Otolemur garnettii TaxID=30611 RepID=H0WY81_OTOGA) HSP 1 Score: 99.8 bits (247), Expect = 3.560e-21 Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEV-STDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD GV+ +W++ E+ D GS +DLGL PGGRV+L S I +G SF+ ++ + T ++ F PSDPN F+VG G + H +R G PRAFR + CG V + FSPF FLAGCSDGSVRL+ + ++ Sbjct: 802 IASLDESGVLNMWVVVELPKADIAGSVSDLGLLPGGRVKLVHSAVILLGGSFS-------------------LKGNEFWGTTQTMSVKFLPSDPNHFIVGTDTGLIGHGTRQGVRAAPRAFRPQQ--CG--ARPVTVNAMDFSPFGEPIFLAGCSDGSVRLHGLSSE 945
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: UPI00112AA4DE (WD repeat-containing protein 60 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112AA4DE) HSP 1 Score: 99.4 bits (246), Expect = 4.840e-21 Identity = 63/167 (37.72%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVST-DEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD G++ +W++ E+ T D GSQ+DLGL PGGRV+L S ++H+ SF P D +T + F P D N FV+G G V H +R G PP+ +R + CG VT + FSPF FL GCSDGS+RL+ + + Sbjct: 797 IASLDESGILNLWVVIELQTVDPAGSQSDLGLIPGGRVKLVHSSAVHLNSSFF-----------PKD-----------VETPQTLNIKFLPLDSNHFVIGTDIGLVGHGTRHGLRAPPKVYRPQQ--CGSR--PVRVTAIDFSPFGEPVFLVGCSDGSIRLHLMTAE 937
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: A0A6P5KNP1_PHACI (LOW QUALITY PROTEIN: WD repeat-containing protein 60 n=6 Tax=Metatheria TaxID=9263 RepID=A0A6P5KNP1_PHACI) HSP 1 Score: 99.4 bits (246), Expect = 4.860e-21 Identity = 61/167 (36.53%), Postives = 94/167 (56.29%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEV-STDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 IASLD G++ IW++ E+ D GSQ+DLGL PGG+++L S +I + +SF P ++ S M+ T++ + F PSDPNR+++G G + H +R P+ F+ +R P VT + FSPF FLAGCSDGS+RL+++ ++ Sbjct: 825 IASLDENGILNIWVVVELPKVDFAGSQSDLGLIPGGKIKLVHSSTIQLNNSFP----------PKVNTSVRPMQ------TLI---VKFLPSDPNRYIIGTDRGVISHGARHDSKVSPKLFKPQQRE-ERPV---KVTVIDFSPFGEPVFLAGCSDGSIRLHQLNSE 968
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Match: A0A8J1UCL6_OWEFU (Ofus.G111411 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UCL6_OWEFU) HSP 1 Score: 98.6 bits (244), Expect = 8.360e-21 Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 1 Query: 1 IASLDGRGVVFIWLITEVST-DEGGSQTDLGLSPGGRVRLTMSKSIHVGHSFTALTTKTITRSPPIDRSADGMRAGDSADTIVAHTLAFSPSDPNRFVVGNSFGRVHHVSRLGDPPPPRAFRASRRACGDPCWSGGVTCLSFSPFFIKHFLAGCSDGSVRLYKVRTD 498 +AS++ + V+ +W++ E+ T DE GS++DLGL+PGGR++L S ++H+ + P+ +RA + + PSDP+ F VG G V H R G PP+ ++ A + V CL F+PF FLAGC+DGS+RL+ + ++ Sbjct: 415 LASMEEQAVLNLWVVAEIVTADEAGSESDLGLAPGGRIKLLKSSAVHLEN--------------PVKTFKASLRA---------YEMQLLPSDPSHFYVGTDSGYVVHGVRYGGKAPPKGYKPEIEAPVE------VFCLDFNPFSFPIFLAGCADGSIRLHNIHSE 552 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9254.17044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9254.17044.1 >prot_H-paniculata_contig9254.17044.1 ID=prot_H-paniculata_contig9254.17044.1|Name=mRNA_H-paniculata_contig9254.17044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp IASLDGRGVVFIWLITEVSTDEGGSQTDLGLSPGGRVRLTMSKSIHVGHSback to top mRNA from alignment at H-paniculata_contig9254:8317..9513+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9254.17044.1 ID=mRNA_H-paniculata_contig9254.17044.1|Name=mRNA_H-paniculata_contig9254.17044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig9254:8317..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9254:8317..9513+ >mRNA_H-paniculata_contig9254.17044.1 ID=mRNA_H-paniculata_contig9254.17044.1|Name=mRNA_H-paniculata_contig9254.17044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig9254:8317..9513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |