mRNA_H-paniculata_contig9253.17043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Match: D8LLV3_ECTSI (DUF3730 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLV3_ECTSI) HSP 1 Score: 973 bits (2515), Expect = 0.000e+0 Identity = 643/1310 (49.08%), Postives = 817/1310 (62.37%), Query Frame = 2
Query: 38 MSKALAPFLARASVDQTETQHDAVGRVVQFIFEKHDGTSEADAAALAEGRNALYMMLGSSHLAVVSKACRGLTELLTAHNSAE-DISEANNRILKALEATLSRQQDQ--QPLTVASTNPVGPIAQALTRCLVASWRMEAAKSEKSE---ENEIEQGKDFGALIASVLSMNRGLMYTPLAHEATCLLGLQREDGQNYTPREAVRVVGLLASVILLQPEYANLRGGFLLKLSTASASTSPAMKLSLVVFQAELLFFCAVHTAAHADVAAGWCDALANASLSLDSDAAWKEASRAVAAATIYLVAEFREHGLSIAQLLPALQCLVEADPHSLTNEVAFLGIAALQSSCIDEREGLLDIVGKTTHVM-PRHIASNSGIMDSPSAVGSTASTTLSISQQLEELWSLETLVYPVASMSSTGNTIAAEVLPLLEAALVKASARKPRGGLPMTVPKFQ---DANYSPHESSRG------CSTVLLGVRRLCTLEGNEEELVRSCEGLKRCAGDFGRGYGSPNE--RAAAISADIESAFCVLAPLLLRPRTGKRVTDVLCAATVAMVRAVPTLGIRLLPFLLYVIRRRGGLVSDGSAVLGLLQLLPELGRHKVAAKPVAGVIQALARAHQPSVRGVGLRLAALLIGINSRTFNQLHALLAETPEQNRPPSSAEPDESRLARVAGMLDICLTDPEQGLDFIRPLQAFLVDPMPAVTALALRAIAVLCRDECLDFDAALRIVSKKGKVAHTGSAVAAAGTGGYKWGDARVMAALAKLCGSGAEXXXXXXXXXXXXXXXXXXDAEH-EWGMGAAVETLLGLNLRSHPDVSVRVAVYRALENHLPALLLAEVAEETGGDAVALAPRVRAFVAGALAIEPALCARASLNKAAGVILAAESVEPATWVPLKHRSRGADRGDAGDDLARGPAEGRTGPSNRLLAVLPTADDVLQTFRLDVSSSPGLAGAALWSYPSASVIPSAAAEGGAARSMTAQARRDGMVVDLAELLAAEGGGVGGLGVCPWQRASIPLGVQRYVTRLLAACFAAEASSP----ETNGDVEVAAATIEACRKSIEGLRGVPSSLIALALASLANCVPASFAHVKTELADQAISRLRAQTTSEATSAQSVLSGDEIIPMCAAMTVRTLPESGAEKVMDALQEIQDF-AARVSGTFGSRDRIGEVAQATVIPNDALSFWSVAALGVASEWACSCPRSPTARRVLLYSARHLLGGLAREVESDVVGGIAEAWFGEAADMNAAPRVDGVVEWGNVDLGRVSGHGEDIGGIGTPATADGLRCMALFMGLSSVVPGLRSTEMHAELLQV 3895
M K L LARA VDQ ET +A+ R+V+ + E G + R AL+ LGSS LAVVS C+GLT+LL + +S+ D+ E+ + +++ L+A ++R++DQ Q A N + Q LTRCLVA R+ A + + E + G + A +LSMNRGL++ L+HE TC L D PREAVRVV LAS +LLQPEYANLR GF+LKLS ASA+ S A+KL L++ QAELL F A+HT AHADVAAGW +L N ++SLDSD AW ASRA+A ++L++EFR G+ I +L ++Q LV ADP L +EVAFLGI ALQS CIDERE LLDIVG+T M PR + P + + WSLETLVYP+ SM++TGN ++A VLPLLEAAL +R KF+ DA SS G S V LG+RRL L+G+++ +V +C GLK+ A D G + R A+ AD+E C+LAPLLL+ ++ + +C VA+VRAVP+LG+RLLPF+LY IR+ GG+ S+G +V LL LLPELG HK++AKPVA VIQALA+A Q +VRG+G+RL A L+ +N RTFNQL +LL+ETP + PP S EPDESRL R AGML+IC TDPE GL+ +RPLQ FL D AVTALAL+AIA LCR +CLDF AALRIV+KKGKVAHTG + A +GD RVM ++A+LCG+GAEXXXXXXXXXXXXXXXXXX WGMG AVE LL L HPD VR AVY AL HLPALL A + +A+ A VR F+A A++ + + +++L K +++A ESVEP+TWV K D G R GPSNRL+A LP + VLQ FR D SS PGLAGA LWSYP+ P A A A RD M+ D EL+A EG G GGL +CPWQRA G+QRYV RL AAC AAE++ E G +V AA +EACR++I +RGV L+A+A ASLA+CVPASF HV +A+ RLR T AQ++L G+E+ P+CAAM VR LPE+ V L+EI+ F + V G SRD V +A + PN+A SFWS A+GVASEW P +P AR +L + R LL GLA V SD + I E WFG + A VV+W +VD+G+ H ED IG P T G C+ALF+GLSS +PGLR+T +H+ELLQV
Sbjct: 1 MRKDLTALLARAEVDQVETSQNAISRLVKLVAEDSSGV---------DAREALFGCLGSSRLAVVSSGCQGLTQLLESQDSSGIDLIESGDELVRHLKAAMAREEDQRNQQGDGARHNQEHGVTQCLTRCLVAISRLSARREAQPTCGGEKGVWAGVAGNGVSAMLLSMNRGLLFPALSHETTCFLSRLNTD-----PREAVRVVCPLASALLLQPEYANLRSGFMLKLSMASATASDAVKLCLLILQAELLVFGAMHTGAHADVAAGWFCSLVNTAVSLDSDPAWDRASRALAGVGVFLLSEFRGRGVPITPVLSSMQFLVAADPLCLADEVAFLGITALQSHCIDEREALLDIVGRTLSAMAPR-------VFHDPKVIPDNVDVRV-------RAWSLETLVYPLVSMAATGNPVSANVLPLLEAALGGVYSRS----------KFETMADARVEGDRSSAGNEHLRLSSPVALGIRRLGVLDGDQQAMVVACMGLKQRANDLSGSNGGVTDAGRDASAVADLECGLCLLAPLLLQQH--EQTHEAVCTVLVAVVRAVPSLGVRLLPFVLYGIRKLGGVASEGGSVARLLHLLPELGAHKLSAKPVAAVIQALAKAPQQAVRGLGMRLVAALVQVNPRTFNQLQSLLSETPADHTPPLSPEPDESRLCRAAGMLEICETDPELGLECVRPLQGFLGDGSSAVTALALKAIAALCRSDCLDFGAALRIVTKKGKVAHTGRDDSDA------FGDPRVMESMAQLCGAGAEXXXXXXXXXXXXXXXXXXXXXXLGWGMGKAVEILLAGGLGCHPDDGVRSAVYEALGFHLPALLRAVSGKNAEEEAIVAARHVRVFLAQAMSTDGSFMVQSNLRKVVQIVVAEESVEPSTWVSAKRDGASRDGGQK--------RSVRPGPSNRLVAALPEPESVLQGFRQDDSSCPGLAGAVLWSYPT----PQATA---------VVAHRDIMIRDFGELMAVEGTG-GGLALCPWQRAGTLSGIQRYVARLFAACVAAESTEAAGRGEARGGTDVTAAAVEACRQAIGNIRGVQGGLVAVASASLASCVPASFYHVAVVETGRAVDRLRRCTGG----AQTLLDGEEMFPLCAAMAVRALPEASTTLVESTLEEIERFHSTAVEGWTTSRDSAAAVGEA-MTPNEAQSFWSCVAVGVASEWGLRHPTAPGARIAVLRAVRCLLAGLANAVRSDHIHAIVETWFGGNGSVAAREDRAAVVDWESVDIGQAI-HWED-SEIGLPTTTRGSICLALFLGLSSSLPGLRATGLHSELLQV 1235
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Match: A0A836CP61_9STRA (DUF3730 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP61_9STRA) HSP 1 Score: 273 bits (699), Expect = 3.470e-71 Identity = 348/1283 (27.12%), Postives = 519/1283 (40.45%), Query Frame = 2
Query: 44 KALAPFLARASVDQTETQHDAVGRVVQFIFEKHDGTSEADAAALAEGRNALYMMLGSSHLAVVSKACRGL-TELLTAHNSAEDISEANNRILKALEATLSRQQDQQPLTVASTNPVGPIAQALTRCLVASWRMEAAKSEKSEENEIEQGKDFGALIASVLSMNRGLMYTPLAHEATCLLGLQREDGQNYTPREAVRVVGLLASVILLQPEYANLRGGFLLKLSTASASTSPAMKLSLVVFQAELLFFCAVHTAAHADVAAGWCDALANASLSLDSDAAWKEASRAVAAATI-YLVAEFREHGLSIAQLLPALQCLVEADPHSLTNEVAFLGIAALQSSCIDEREGLLD-----------IVGKTTHVMPRHIASNSGIMDSPSAVGSTASTTLSISQQLEELWSLETLVYPVASMSSTGNTIAAEVLPLLEAALVKASARKPRGGLPMTVPKFQDANYS-------PHE--SSRGCSTVLLGVRRLCTLEGNEEELVRSCEGLKRCAGDFGRGYGSPNERAAAISADIES----AFCVLAPLLLRPRTGKRVTDVLCAATVAMVRAVPTLGIRLLPFLLYVIRRRGGLVSDGSAV-LGLLQLLPELGRHKVAAKPVAGVIQALARAHQPSVRGVGLRLAALLIGINSRTFNQLHALLAETPEQNRPPSSAEPDESRLARVAGMLDICLTDPEQGLDFIRPLQAFLVDPMPAVTALALRAIAVLCRDECLDFDAALRIVSKKGKVAHTGSAVAAAGTGGYKWGDARVMAALAKLCGSGAEXXXXXXXXXXXXXXXXXX-DAEHEWGMGAAVETLLGLNLRSHPDVSVRVAVYRALENHLPA-----------------------------------LLLAEVAEETGGDAV-------ALAPRVR--AFVAGALAIEPALCARASLNKAAGVILAAESVEPATWVPLKHRSRGADRGDAGDDLARGPAEGRTGPSNRLLAVLPTADDVLQTFRLDVSSSP---GLAGAALWSYPSASVIPSAAAEGGAARSMTAQARRDGMVVDLAELLAAEG----GGVGGLGVCPWQRASIPLGVQRYVTRLLAACFAAEASSPETNGDVEVAAATIEACRKSIEGLRGVPSSLIALALASLANCVPASFAHVKTELADQAISRLRAQTTSEATSAQSVLSGDEIIPMCAAMTVRTLPESGAEKVMDALQEIQDFAARVSGTFGSRDRIGEVAQATVIPNDALSFWSVAALGVASEWACSCPRSPTARRVLLYSARHLLGGLAREVES-DVV 3652
KAL L + + ET DAV V F H G EA A A ++ L +L S L V +K+C+ L E H D A ++KALE T +R T A++ + + ++ ++ + G+ A +A + + A + + R PR A + L S +LL P++ L + + A + +A WC + NA+L L+ W A+ V A + L+ + R G + L L L D SL +VA + + ALQS ERE L ++ +T V+ + ++ + +A + L+ LWSL+ +YP+ +MS+ G+ +A LP + + K + P+ D + S P E S GC+ + +LC L S GL C +P+ A + AF LAPLLLRP R+ + AA A+ A + +LP LL+ + R +D A+ L LL LP LG HKVAAK V GVI+ LA +R + LR+A L +NSR ++L LL ++EPD RLA A + +C DPE+G++F+ LQA++ D +P V ALAL+ R +CLDF ALRIV KKGK++H TG G VM ALA+LCG+GA+ A + G AA L +L H D SVR Y ++ + P +LL V E A P++R A + A E + A A+L +AA ++ E +PATW+ + A G A + G++GPSN LLA LP + +L ++ + GLAGA LWS+P ++ +A +T + RD M L +LL E G C WQ A+ PLGV R+V RLL C AA A E G C++ I+ P+ LALA LA C+ S A + +LA Q S LR + +A + ++P+C A+ LP S A ++ Q Q + A +FWS A++G+ + W+ + A + L + + LL +A V + DVV
Sbjct: 8 KALPALLQKVGAGEHETSSDAVAEV----FALH-GKLEA-AVDRATLQDKLQSLLISESLVVCTKSCQALLAEAQLGHIPTGD---AAKWLVKALEQTTAR-----------TKRAPAAVHAVSAGIAGVYLLQQQSADAN-------GEPDAASVAGAELLGVAMDINETAAASILTEVVARSQRGALPPRAAASALLALLSAVLLHPQHERLHP------------------------------YIVAQSWAQSQLAVSWCAGVLNAALVLEDPVLWSYAAAQVRWAVVAVLIPQLRSGGFPLDAALLILWQLASVDGLSLLPDVAHVALLALQSQAASERELALQARCAQLSMYRGLLMRTKRVVLLLGLAVLSLVLTAAAEAEAPAAVLNAPSPSHLLWSLDVCIYPLLAMSAFGDAVAGACLPQARSLISKLTPAHRAAAQAAPQPRGHDGSGSYGSYTCAPREPASPVGCAAL-----QLCAA------LSASAAGLDTCRAAAAHFSEAPSATANSXXXXXXXXXXXAFAALAPLLLRPCAEARLAALDVAA--ALAAAHHAAAVHVLPLLLHCLARW----TDAPALRLRLLHALPLLGGHKVAAKQVWGVIRGLAEGAGADMRAIALRMAYKLFEVNSRMLSKLVGLLQGCC------GTSEPDSMRLAAAATLSQLCQRDPEEGVEFVPQLQAYMQDALPGVAALALQXXXXXARQDCLDFALALRIVKKKGKLSHF--------TGDPASGHPLVMRALAELCGAGADVLLLSADDDDELQLQESGAPAPPQLGTDAAAALALLWDLARHSDNSVRRMAYASVAKYAPLVVAVPAEEADSCLHSSRSVMYHQVEHCYARNCTYNMLLFNVIERVQNTASYTLRKQQLFKPQLRSGARLGAAFRHETSSDAMAALIEAAKPVIEHECNDPATWLAVSQ----APSGRASRATGSARSGGKSGPSNALLASLPGSAQLLDQYKAGARTGAPFAGLAGAVLWSFPDSATWCAAVT---VTEGVTVEQLRDDMAALLGDLLVDEAALNSGSXXXXXXCAWQAAAAPLGVLRFVGRLLEVCVAA-AQGAEGEG--------ARTCQRLIKEHCAQPAHRC-LALACLATCLLPSHAQMAYDLAQQQCSTLREVSDPQA---------EHLMPLCRALAAAALPPSTAPSLLSERQ-----------------------QRAPVQQPAAAFWSAASIGITTAWSAINSSAQAALPLTLDAIKQLLSVVAAAVPAVDVV 1153
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Match: A0A2P6V559_9CHLO (RST1 isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V559_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 3.940e-11 Identity = 74/237 (31.22%), Postives = 107/237 (45.15%), Query Frame = 2
Query: 1514 GYGSPNERAAAISADIES-AFCVLAPLLLRPRTGKRVTDVLCAATVAMVRAVPTLGIRLLPFLLYVIRRRGGLVSDGS----------AVLGLLQLLPELGRHKVAAKPVAGVIQALARAHQP-SVRGVGLRLAALLIGINS-RTFNQLHALLAETPEQNRPPSSAEPDESRLARVAGMLDICLTDPEQGLDFIRPLQAFLVDPMPAVTALALRAIAVLCRDECLDFDAALRIVSKK 2185
G G+ RAA + + VL LL P + V A VA V P LG+ LLP L+ +++R+ G +L LLQ LP GRH A V +Q L P +++ VGLRL + L + R + QL + P A R+AR + DIC DP++ + + LQ + D PAV A+ L IA+LC + L+F A R+V ++
Sbjct: 184 GAGAGGGRAARDQRQLSAPTLLVLCALLQHP--AEAVQRAALRAGVAAVEVTPLLGLTLLPLLVQLLQRQTERFLSGGWPGKQQRPSRLLLELLQALPAAGRHPAALPFVLRTLQQLLTPGAPEALQAVGLRLLSRLWQASGGRAYAQLRGAVIGYAAPGLQPGEA----LRVARAECLRDICTADPDKAAELVGLLQECVGDESPAVAAVGLDCIALLCEADVLEFYGAWRVVHRR 414
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Match: A0A2P6TB28_CHLSO (RST1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TB28_CHLSO) HSP 1 Score: 78.2 bits (191), Expect = 9.400e-11 Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = 2
Query: 1646 VAMVRAVPTLGIRLLPFLLYVIRRR------GGLVSDGSAVLGLLQLLPELGRHKVAAKPVAGVIQALARAHQPSV-RGVGLRLAALLIGINS-RTFNQLHALLAETPEQNRPPSSAEPDESRLARVAGMLDICLTDPEQGLDFIRPLQAFLVDPMPAVTALALRAIAVLCRDECLDFDAALRIVSKK 2185
VA + A P LG+ LLP L++ ++R+ G + +L LL L E G H A V +Q L A P V + GLRL L + R + QL + + P A R+AR + DIC +DP++ ++ + +Q L D PAV AL L +A+LC + L+F AA R+V ++
Sbjct: 423 VAAMAATPLLGLSLLPLLVHEMQRQVERFLSGKVQRPQRQLLELLHALAEAGHHPAALPFVLRTLQPLLSAGTPEVLQAAGLRLLCRLWHTSGGRAYQQLRGAVIGYAAPGQSPGLA----LRVARAECLRDICSSDPDKAVELVGLVQECLADESPAVAALGLDCVAMLCEADVLEFYAAWRVVHRE 606
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Match: M4C295_HYAAE (DUF3730 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C295_HYAAE) HSP 1 Score: 65.9 bits (159), Expect = 6.590e-7 Identity = 37/96 (38.54%), Postives = 57/96 (59.38%), Query Frame = 2
Query: 1901 SRTFNQLHALLAETPEQNRPPSSAEPDESR-LARVAGMLDICLTDPEQGLDFIRPLQAFLVDPMPAVTALALRAIAVLCRDECLDFDAALRIVSKK 2185
SR F +L +L E P+S D R + R+A + +C DP+ G+ FI P+QAFL D + +V ++A+ AI LC +CLDF A +I+++K
Sbjct: 364 SRVFPRLETMLLE-------PTSPVDDVGRHIVRMATIKALCEKDPDLGVQFIAPIQAFLEDQLKSVVSMAMDAITALCGGDCLDFYVAFKIIAQK 452 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9253.17043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9253.17043.1 >prot_H-paniculata_contig9253.17043.1 ID=prot_H-paniculata_contig9253.17043.1|Name=mRNA_H-paniculata_contig9253.17043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1287bp MSKALAPFLARASVDQTETQHDAVGRVVQFIFEKHDGTSEADAAALAEGRback to top mRNA from alignment at H-paniculata_contig9253:4119..9231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9253.17043.1 ID=mRNA_H-paniculata_contig9253.17043.1|Name=mRNA_H-paniculata_contig9253.17043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5113bp|location=Sequence derived from alignment at H-paniculata_contig9253:4119..9231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9253:4119..9231+ >mRNA_H-paniculata_contig9253.17043.1 ID=mRNA_H-paniculata_contig9253.17043.1|Name=mRNA_H-paniculata_contig9253.17043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7722bp|location=Sequence derived from alignment at H-paniculata_contig9253:4119..9231+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |