mRNA_H-paniculata_contig925.17040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig925.17040.1
Unique NamemRNA_H-paniculata_contig925.17040.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig925.17040.1 vs. uniprot
Match: D8LJ74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ74_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.150e-12
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   16 AIAILRPREPLPYMGDDGITVLSFNVLLPNGNDGWWIYKVSQ 141
            A+AIL  + PLP + DDG+TV+SFNVLLPNGNDGWW+YK  Q
Sbjct:   11 AVAILPAKTPLPLL-DDGLTVVSFNVLLPNGNDGWWMYKSYQ 51
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BLAST of mRNA_H-paniculata_contig925.17040.1 vs. uniprot
Match: A0A6H5JCW2_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.970e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   16 AIAILRPREPLPYMGDDGITVLSFNVLLPNGNDGWWIYKVSQ 141
            A+AIL  + PLP + DDG+TV+SFNVLLPNGNDGWW+YK  Q
Sbjct:   11 AVAILPAKAPLPLL-DDGLTVVSFNVLLPNGNDGWWMYKSYQ 51
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BLAST of mRNA_H-paniculata_contig925.17040.1 vs. uniprot
Match: A0A7S1EDE4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EDE4_HEMAN)

HSP 1 Score: 59.3 bits (142), Expect = 6.330e-9
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   25 ILRPREPLPYMGDDGITVLSFNVLLPNGNDGWWIYK 132
            I+ P+EPLP +G +G ++ SFNVLLPN  DGWWIYK
Sbjct:   74 IISPQEPLPQLGAEGFSLASFNVLLPNSKDGWWIYK 109
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BLAST of mRNA_H-paniculata_contig925.17040.1 vs. uniprot
Match: A0A0M0K1H2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1H2_9EUKA)

HSP 1 Score: 58.2 bits (139), Expect = 1.590e-8
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   28 LRPREPLPYMGDDGITVLSFNVLLPNGNDGWWIYKVSQRISASG 159
            L+P + LP +G  G+T+L++NVL+PN NDGWWIYK+ +   ++G
Sbjct:    3 LKPYDRLPQLGPSGLTLLTWNVLIPNSNDGWWIYKMYEPTGSAG 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig925.17040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ74_ECTSI3.150e-1269.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCW2_9PHAE7.970e-1169.05Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A7S1EDE4_HEMAN6.330e-963.89Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0M0K1H2_9EUKA1.590e-850.00Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig925contigH-paniculata_contig925:30353..30511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.449596-CDS-H-paniculata_contig925:30352..305111622931151.449596-CDS-H-paniculata_contig925:30352..30511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig925 30353..30511 +
1691481613.5063076-CDS-H-paniculata_contig925:30352..305111691481613.5063076-CDS-H-paniculata_contig925:30352..30511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig925 30353..30511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig925.17040.1prot_H-paniculata_contig925.17040.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig925 30353..30511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig925.17040.1

>prot_H-paniculata_contig925.17040.1 ID=prot_H-paniculata_contig925.17040.1|Name=mRNA_H-paniculata_contig925.17040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MNDKEAIAILRPREPLPYMGDDGITVLSFNVLLPNGNDGWWIYKVSQRIS
ASG
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mRNA from alignment at H-paniculata_contig925:30353..30511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig925.17040.1 ID=mRNA_H-paniculata_contig925.17040.1|Name=mRNA_H-paniculata_contig925.17040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig925:30353..30511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGATAAGGAGGCGATTGCGATCCTGCGACCGAGAGAACCGCTGCC
GTACATGGGAGATGATGGTATCACGGTTTTGTCATTCAATGTTCTCCTTC
CGAATGGAAATGACGGCTGGTGGATATACAAGGTCAGTCAGCGGATTAGT
GCATCCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig925:30353..30511+

>mRNA_H-paniculata_contig925.17040.1 ID=mRNA_H-paniculata_contig925.17040.1|Name=mRNA_H-paniculata_contig925.17040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig925:30353..30511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGATAAGGAGGCGATTGCGATCCTGCGACCGAGAGAACCGCTGCC
GTACATGGGAGATGATGGTATCACGGTTTTGTCATTCAATGTTCTCCTTC
CGAATGGAAATGACGGCTGGTGGATATACAAGGTCAGTCAGCGGATTAGT
GCATCCGGCATGAACGATAAGGAGGCGATTGCGATCCTGCGACCGAGAGA
ACCGCTGCCGTACATGGGAGATGATGGTATCACGGTTTTGTCATTCAATG
TTCTCCTTCCGAATGGAAATGACGGCTGGTGGATATACAAGGTCAGTCAG
CGGATTAGTGCATCCGGC
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