mRNA_H-paniculata_contig9244.17037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9244.17037.1
Unique NamemRNA_H-paniculata_contig9244.17037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9244.17037.1 vs. uniprot
Match: A0A6H5LQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ53_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.070e-13
Identity = 65/134 (48.51%), Postives = 80/134 (59.70%), Query Frame = 1 
Query:    1 MNWMTSGRKRVRRSQKSREQRAKHFAKVAADQRVLPQLVSR----SDTTLAHRQSADVTRLRSRWSLPDRSAQSTGLSLTNIHNNATASPATTSTPSALLRPGPLSNATP----TSLDPTVGVLNLDITPPFSS 378
            MNWMTSGRKRV+RSQK +E RAKHFAKVAAD+   P  VSR    S +TL   QSADV+RL+SRW  P  S          +  +A A   TT+  SA     P SN T     T+ D   G L+L++TPPF++
Sbjct:    1 MNWMTSGRKRVQRSQKVKELRAKHFAKVAADRARAP--VSRPARASSSTL--NQSADVSRLKSRWIQPLPSTHKVPALQRTVAGSAAAEH-TTAEDSA----SPPSNVTTLGSGTTPDFQPGTLDLEVTPPFNA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9244.17037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LQ53_9PHAE3.070e-1348.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9244contigH-paniculata_contig9244:645..1716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9244.17037.1prot_H-paniculata_contig9244.17037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9244 645..1716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.8559492-CDS-H-paniculata_contig9244:644..8721622931150.8559492-CDS-H-paniculata_contig9244:644..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 645..872 -
1691481613.2477944-CDS-H-paniculata_contig9244:644..8721691481613.2477944-CDS-H-paniculata_contig9244:644..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 645..872 -
1622931150.87079-CDS-H-paniculata_contig9244:1308..14351622931150.87079-CDS-H-paniculata_contig9244:1308..1435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 1309..1435 -
1691481613.256113-CDS-H-paniculata_contig9244:1308..14351691481613.256113-CDS-H-paniculata_contig9244:1308..1435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 1309..1435 -
1622931150.882545-CDS-H-paniculata_contig9244:1693..17161622931150.882545-CDS-H-paniculata_contig9244:1693..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 1694..1716 -
1691481613.270715-CDS-H-paniculata_contig9244:1693..17161691481613.270715-CDS-H-paniculata_contig9244:1693..1716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9244 1694..1716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9244.17037.1

>prot_H-paniculata_contig9244.17037.1 ID=prot_H-paniculata_contig9244.17037.1|Name=mRNA_H-paniculata_contig9244.17037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MNWMTSGRKRVRRSQKSREQRAKHFAKVAADQRVLPQLVSRSDTTLAHRQ
SADVTRLRSRWSLPDRSAQSTGLSLTNIHNNATASPATTSTPSALLRPGP
LSNATPTSLDPTVGVLNLDITPPFSS
back to top

mRNA from alignment at H-paniculata_contig9244:645..1716-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9244.17037.1 ID=mRNA_H-paniculata_contig9244.17037.1|Name=mRNA_H-paniculata_contig9244.17037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-paniculata_contig9244:645..1716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTGGATGACCTCAGGGAGGTGAGCAAGTTCACTCAGTCACTAGAA
GAAGTCAATGAATACAGACGCGACATTTGTTTCTGTTGGATAATGGATAC
CTCTGTTGCACATACAGGCGCCTTTTGGATGGAGTGGGATGGTGTACGCG
ATACTACACTGTTATCCGTGTTAGAGACTATTCATAGAGGAATCGCTCGC
AGCTCTTCAAATATATATCGTCAGTTTCATACCCGGACACGTTGCGCGAT
GCTGGTGTATGTTGCTTCTGTCCTTCTTCAGGAAGAGAGTTAGACGCTCT
CAGAAATCGCGAGAGCAGCGAGCGAAGCACTTCGCGAAGGTGGCGGCTGA
TCAGAGGGTGCTTCCGCAGCTGGTTAGCAGGAGCGACACGACCCTGGCGC
ACCGACAGGTTATCTCTAGATCTGTACTATGATCGACTCTTCTAGCAATC
CTCCAGTATGCTGTATCTACTTTTCTCTACCGTTTGTATCTTTGGGTTGC
TGAACACGACGGATTGCTGACGGAATTCGTTGGCAGCTTGGCAGGTTGCT
GTCGACGCTATGCGATTTGTGTAATGCCTTGGTTTGAAAGATGCCAAGCC
CCGTAGTAGAGGGAATGATGATAGCCCATGAGCTCATCGCTCGGTGCTCG
CCGCAGCCGGACATAGATGTAGTACTACACGGGAGTACTAGTTGTGCAAG
AACAGGCTGTTGTAAAGTACATACTGCCGCCGCAACCTCCGGTACGGCCC
TAGCTCTTCGAGGTGAGATCTTATACCGTCATATTCATCGGGCAGATGAA
CCACGTACTTTCCTTCTTTATCCCGACCCATTGTATTGTTTCAGTCGGCA
GACGTAACAAGGCTGCGGTCGCGTTGGAGTCTGCCGGATCGCTCAGCCCA
GTCGACAGGCCTTTCTCTTACAAACATTCACAACAACGCGACTGCTTCTC
CGGCAACCACAAGTACACCATCTGCACTGCTCAGACCAGGTCCACTTTCG
AATGCAACTCCTACATCTCTCGACCCAACCGTCGGCGTGCTCAATCTTGA
CATCACTCCACCGTTCAGTAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9244:645..1716-

>mRNA_H-paniculata_contig9244.17037.1 ID=mRNA_H-paniculata_contig9244.17037.1|Name=mRNA_H-paniculata_contig9244.17037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig9244:645..1716- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTGGATGACCTCAGGGAGATGAATTGGATGACCTCAGGGAGGAAG
AGAGTTAGACGCTCTCAGAAATCGCGAGAGCAGCGAGCGAAGCACTTCGC
GAAGGTGGCGGCTGATCAGAGGGTGCTTCCGCAGCTGGTTAGCAGGAGCG
ACACGACCCTGGCGCACCGACAGGAAGAGAGTTAGACGCTCTCAGAAATC
GCGAGAGCAGCGAGCGAAGCACTTCGCGAAGGTGGCGGCTGATCAGAGGG
TGCTTCCGCAGCTGGTTAGCAGGAGCGACACGACCCTGGCGCACCGACAG
TCGGCAGACGTAACAAGGCTGCGGTCGCGTTGGAGTCTGCCGGATCGCTC
AGCCCAGTCGACAGGCCTTTCTCTTACAAACATTCACAACAACGCGACTG
CTTCTCCGGCAACCACAAGTACACCATCTGCACTGCTCAGACCAGGTCCA
CTTTCGAATGCAACTCCTACATCTCTCGACCCAACCGTCGGCGTGCTCAA
TCTTGACATCACTCCACCGTTCAGTAGCTCGGCAGACGTAACAAGGCTGC
GGTCGCGTTGGAGTCTGCCGGATCGCTCAGCCCAGTCGACAGGCCTTTCT
CTTACAAACATTCACAACAACGCGACTGCTTCTCCGGCAACCACAAGTAC
ACCATCTGCACTGCTCAGACCAGGTCCACTTTCGAATGCAACTCCTACAT
CTCTCGACCCAACCGTCGGCGTGCTCAATCTTGACATCACTCCACCGTTC
AGTAGC
back to top