Homology
BLAST of mRNA_H-paniculata_contig9242.17035.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE) HSP 1 Score: 148 bits (373), Expect = 1.010e-37 Identity = 86/163 (52.76%), Postives = 101/163 (61.96%), Query Frame = 1 Query: 97 GVEVYVWRGAESNPQMLELARTGARWLRDYEGWGAGTNTVVVDEGREPLELLRHLEVPGDGEREPPIYGDLTTPSPPTTAARNGPGCLFHHTVPTAYASTAAGGGALSFTPRHANAPLPSPAEAPTLSPMGPTPSPGGGSVGFSPSPY-EIGVSPAGDVRGGM 582
GV VYVW+GA SN QMLELA+ GARWLRDYEGWG G++ VV+EG+EP E+LRHL+ G REPP+YGDLT+PSP R +AP+ SPAE PTLSP+GP+PSPGG V SPSPY GVSPAG R G+
Sbjct: 597 GVYVYVWKGARSNAQMLELAKEGARWLRDYEGWGVGSSAPVVEEGQEPPEVLRHLDQTGGQAREPPVYGDLTSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMMGR--SAPMLSPAETPTLSPVGPSPSPGG--VSLSPSPYGSTGVSPAGASRFGL 755
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 589 |
| Cds size | 588 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9242.17035.1 >prot_H-paniculata_contig9242.17035.1 ID=prot_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
GKAKLGLGSATGGRSVEGFLGPAAKAVAAASTGVEVYVWRGAESNPQMLE
LARTGARWLRDYEGWGAGTNTVVVDEGREPLELLRHLEVPGDGEREPPIY
GDLTTPSPPTTAARNGPGCLFHHTVPTAYASTAAGGGALSFTPRHANAPL
PSPAEAPTLSPMGPTPSPGGGSVGFSPSPYEIGVSPAGDVRGGMGG back to topmRNA from alignment at H-paniculata_contig9242:5215..7797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9242.17035.1 ID=mRNA_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2583bp|location=Sequence derived from alignment at H-paniculata_contig9242:5215..7797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGGCTAAGCTGGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGA
GGGGTTTTTAGGGCCAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCG
TGGAGGTGTATGTGTGGCGGGGGGCTGAGAGCAATCGTGAGTGGAATGTG
TTGTTGCTGTCATTGTTGCTGGCATCGTTGTTGTTCTGAAGAAAGCTTGC
TGTCTCTTGCCCGGTGTGCGTTGGATGTTGCCAGAGATATTTTATGGGGG
GTGGTGCGGTTTTGTTCGTTCACATTCTCTTGTTTTTGTTTTTGTCTGGC
ATCGTTAGGGCATGATGTGGTATTTCGTCGGGGGGGGGGGGGTGGGGGAT
TGTCGAATTTTCCCGTGTAGTGTACTGTAGTGCATTGCAAGGGTTACAGT
GGAAGGAAGCACGTAGTAGCTTGTGCCACAGTAGCATCGGTTGTCACTAG
CGTTCGGGTTCATTCGTAGTGGTCAGCATTTTCCTGCCTTCGGTGCTTTG
CTTATTCAGGTCGGCTGTTGGCGCTACACTGCGGCACAAATCGGCGTGTA
CCAACTTACAACATGTGACATGTGTGCATTGCAATGTAAAGCGCAAATTC
GACCTTTTTTTCTTCTTTTTTTTCGGAGCTCGTTTGGCTCATGTGTTGTA
TTTATATTGTAACAGCGTCTCTTGCTTTGAAGCATGAATTGAAATATTTA
CATTTTTTTCAGATAGGCCGCTCAATGTACATGGCCCAGATACGGTCAGT
TTTGCCATTTTTTCTGTTGTCAAACGCCAATGAGTACATCTGGATCTCTG
TGAATCCTGTTTTTTTTTTAGTCGAGATTCGTTGGGCATATATGAGTTGT
TCCCCCCCCCCCCCCCATACTTGGAAGATGACTTTTCTTACGTGAACGAC
TGTTGGATTAATCGTGTTTTGAAAAAAAAGAAGTTTATCTGCAGTCGTTT
TTCGTGGCTGTTTTTTTGTTTTACGATGCAGAAAGGAAAACCGTTGCACA
GCACCTCAAATGATGTCGATGGCATGAAGACGCCACTAGCATCACCGCAA
CTAGCACCGCCGTCATGTTATTTTTTATTTATTCTGATTTAATTCGATTT
GGGTTCATTATTTCGTGTCCGTTTTTTCACAGCACAAATGTTAGAGCTGG
CCAGGACAGGGGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGA
ACAAATACTGTCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCG
GCATCTGGAGGTCCCCGGGGACGGAGAGCGAGAAGTGAGTTTAGTACGTG
GTAATGTTCTGCGTTACTGCTACGCTACTTCCACTAGTGAGTGCCGTCTG
GGGCTACCGGCTAGGCCTGTGTAGCCCTCGGCGTTTGCTCTTCGACTTAT
TTTGACGACTCACTTCGTTGGCAACAAGCCTGCCTCTTTGTGCGTGAAGA
TTTCGCTTTTTTGGATTTGCTCGAGTGTAGTAGCTCTGAAGCAGATTTGA
ATATGAAAGGTCCAAAACGATGACTATACATGTCCCATCTCTATGACATC
ATCAACGCTAACTGCCAACTAGGTACGAGGAATAATGTACTTGTTGGTTT
CATGTGTTTATATAGCTGACCGAATACTGGCGACTTGGAATATTGGGTAC
TAATTGTTCATTTTGGGTGTTGTTTTGTACTTCAACTTGAAGGACAGGTT
TCACAGAGTACAGACATGTATGTCTGTATCATAGAAACATGTGTAATTGT
GTCGCCCTCAAGGGATAGAACGGGACGTTTTTATAGCGTCCAAGATATTT
TCCTTCCTCCGGGAGCTGTTTTAGTGTATAGAGGCGTGTAACTATCTCCG
CTTCTTTTTTTTTTATATAATCCTGCAGTGTTTTTGGAGTTGATCCCCGA
TTTTGTAAGGAAATTGGTGAAATCCATCGGGAGTATGCGCGGCGCAAAAA
AAAGATACCTGCCGAAAAAAGGGCCATATCTTTGTCCCTTTTTTGGATTT
TCCCAATGGAAAATGTGAAAATGGTCAATGGTAGCTAAATATCAAGCGGT
CATCACTCCTGATACACAAATCGAATCGAAATGGTTTTCAGGATAGCGCC
GATGAGTCAAACGGATTTTAGCTCGTCCACGATCCCAACCTCGGCCTCTG
AACACTCTTAGTTCTGGAGAGGTAATCTGCCGAATACAACCGACTTTGGT
TGTGGCACGGAGGAAGTATTCACCTATTCCCCTCTTCTCATCTCCCCCTC
ACCTACCTCCTCCCGTCCATTACGCTGCTGCAGCCCCCCATCTACGGAGA
TCTGACGACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGAT
GCCTTTTCCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGG
GGAGGGGCGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTC
TCCGGCCGAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGG
GGGGCGGCAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCT
CCCGCTGGAGACGTGCGGGGTGGGATGGGGGGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig9242:5215..7797+ >mRNA_H-paniculata_contig9242.17035.1 ID=mRNA_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig9242:5215..7797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGGCTAAGCTGGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGA
GGGGTTTTTAGGGCCAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCG
TGGAGGTGTATGTGTGGCGGGGGGCTGAGAGCAATCGGGAAGGCTAAGCT
GGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGAGGGGTTTTTAGGGC
CAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCGTGGAGGTGTATGTG
TGGCGGGGGGCTGAGAGCAATCCACAAATGTTAGAGCTGGCCAGGACAGG
GGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGAACAAATACTG
TCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCGGCATCTGGAG
GTCCCCGGGGACGGAGAGCGAGAACACAAATGTTAGAGCTGGCCAGGACA
GGGGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGAACAAATAC
TGTCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCGGCATCTGG
AGGTCCCCGGGGACGGAGAGCGAGAACCCCCCATCTACGGAGATCTGACG
ACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGATGCCTTTT
CCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGGGGAGGGG
CGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTCTCCGGCC
GAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGGGGGGCGG
CAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCTCCCGCTG
GAGACGTGCGGGGTGGGATGGGGGGCCCCCCCATCTACGGAGATCTGACG
ACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGATGCCTTTT
CCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGGGGAGGGG
CGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTCTCCGGCC
GAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGGGGGGCGG
CAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCTCCCGCTG
GAGACGTGCGGGGTGGGATGGGGGGC back to top
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