mRNA_H-paniculata_contig9240.17033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9240.17033.1
Unique NamemRNA_H-paniculata_contig9240.17033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.040e-36
Identity = 100/257 (38.91%), Postives = 135/257 (52.53%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*T-SLCGQQRSVLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGR-----------LEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIH-GIILESLQLPVVQG*WTA 968
            F+G    PP     G+A   P K SI W + PANR + G P+ GMS+GV E SWCD RECKLW+++SWK RP   S+  Q+R +L++DD+ CH+D  F  +LK+E NT      + P    P+L+P  +  N+     K   RG       ++   + P+ G+    G+G            + P T    +  FKICGL   LDGS+D+ W  H FG D YR +L EQQR E    H  + L  LQLP V    TA
Sbjct:  294 FKGTPFVPPATPGKGKAT-QPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANT---IVIFIPGGLTPLLQPLDRMLNKQM---KRLLRGMYTAHTAKA--ARDPKTGKLAPPGRGAVATWCKNAWASITPETA---KTCFKICGLTLALDGSEDHAWCLHNFG-DGYRELL-EQQRVEWLAEHPNVTLPPLQLPKVPAESTA 536          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5K3D3_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 6.470e-36
Identity = 96/249 (38.55%), Postives = 136/249 (54.62%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*T-SLCGQQRSVLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGR-----------LEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIH-GIILESLQLP 944
            F+G    PP     G+A   P K SI W + PANR + G P+ GMS+GV E SWCD RECK+W+++SWK RP   S+  Q+R +L++DD+ CH+D  F  +LK+E NT      + P    P+L+P  +  N+    +++  RG       ++   + P+ G+ V +G+G            + P T    +  FKICGL   LDGS+D+ W  H FG D YR +L EQQR E    H  + L  LQLP
Sbjct:   21 FKGTPFVPPATPGKGKAT-QPRKNSIAWEVLPANRSKHGVPVGGMSFGVQEESWCDLRECKVWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANT---IVIFIPGGLTPLLQPLDRMLNKQM--KRLLRRGMYTAHTAKA--ARDPKTGKLVPLGRGAVATWCKNAWASITPET---VKTCFKICGLTLALDGSEDHAWCLHNFG-DGYRELL-EQQRVEWLAEHPNVTLPPLQLP 256          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.100e-35
Identity = 89/244 (36.48%), Postives = 123/244 (50.41%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGA---RKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIHGIILESLQLPVVQG 956
            F+G    PP     G++   P K S+ W I PANR + GHP  GMS+GV E SW D REC  W+  SWK RP      QQR  +L++DD+ CH+D+ F  +LK++ NT      + P    P+L+P  +  N+       RK      +      SG  + P  G      +   E +T    +  F ICGL   LDGS+D+ W EH FG+DY R +L EQ+     +   + L  L+LP V G
Sbjct:  174 FKGTPFTPPTVSGKGKSTL-PRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANT---IVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDY-RDLLEEQRAVWLAEHADVTLPPLKLPKVPG 412          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KKC9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC9_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.340e-35
Identity = 93/239 (38.91%), Postives = 126/239 (52.72%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIHGIILESLQLPVV 950
            FQG    PP     G++   P K S+ W I PANR + GHP  GMS+GV E SW D REC  W+  SWK RP      QQR  +L++DD+ CH+D+ F  +LK++ NT      + P    P+L+P  +  N+ Q  R +       +G V S    + R GR     +G + P T    +  FKICGL   LDGS+D+ W EH FG+DY R +L EQ      +   + L  L+LP V
Sbjct:  239 FQGTPFIPPTVSGKGKSTL-PRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANT---IVIFTPGGLTPLLQPLDRTLNK-QMKRLL-------RGNVGS----SLRGGRK----RGSITPET---VKTCFKICGLTLALDGSEDHAWCEHNFGEDY-RDLLEEQHAVWLAEHPDVTLPPLKLPKV 453          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 5.890e-35
Identity = 99/257 (38.52%), Postives = 134/257 (52.14%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*T-SLCGQQRSVLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGR-----------LEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIH-GIILESLQLPVVQG*WTA 968
            F+G    PP     G+A   P K SI W + PANR + G P+ GMS+GV E SWCD RE KLW+++SWK RP   S+  Q+R +L++DD+ CH+D  F  +LK+E NT      + P    P+L+P  +  N+     K   RG       ++   + P+ G+    G+G            + P T    +  FKICGL   LDGS+D+ W  H FG D YR +L EQQR E    H  + L  LQLP V    TA
Sbjct:  287 FKGTPFVPPATPGKGKAT-QPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANT---IVIFIPGGLTPLLQPLDRMLNKQM---KRLLRGMYTAHTAKA--ARDPKTGKLAPPGRGAVATWCKNAWASITPET---VKTCFKICGLTLALDGSEDHAWCLHNFG-DGYRELL-EQQRVEWLAEHPNVTLPPLQLPKVPAESTA 529          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 9.560e-34
Identity = 87/242 (35.95%), Postives = 118/242 (48.76%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFR-GRN*QGRVESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIHGIILESLQLPVVQG 956
            F+G     P    +G++   P K S+ W I PANR + GHP  GMS+GV E SW D REC  W   SWK RP      QQR  +L++DD+ CH+D+ F  +LK++ NT      + P    P+L+P        +  R  H     +      SG  + P  G      +   E  T    +  FKICGL   LDGS+D+ W  H FG+DY R +L EQ      +   + L  L+LP V G
Sbjct:   19 FKGTPFTSPTVSGNGKSTL-PRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANT---IVIFIPGGLTPLLQPLDLNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDY-RDLLEEQHAVWLAEHPNVTLPPLKLPKVPG 255          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.530e-33
Identity = 98/257 (38.13%), Postives = 131/257 (50.97%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*T-SLCGQQRSVLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGR-----------LEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIH-GIILESLQLPVVQG*WTA 968
            F+G    PP     G+A   P K SI W + PANR + G P++GMS+GV E SWCD RECKLW++ SWK RP   S+  Q+R +L++DD+ CH+D  F  +LK+E NT      + P    P+L+   +  N+ Q  R +                  P+ G+    G+G            + P T    +  FKICGL   LDGS+D+ W  H FG D YR +L EQQR E    H  + L  LQLP V    TA
Sbjct:  299 FKGTPFVPPATPGKGKAT-QPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANT---IVIFIPGGLTPLLQLLDRMLNK-QMKRLLXXXXXX----XXXXXXXXPKTGKLAPPGRGAVATWCKNAWASITPET---VKTCFKICGLTLALDGSEDHAWCLHNFG-DGYRELL-EQQRVEWLAEHPNVTLPPLQLPKVPAESTA 541          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 8.000e-33
Identity = 87/242 (35.95%), Postives = 119/242 (49.17%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRV---ESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIHGIILESLQLPVV 950
            F G    PP     G++   P K S+ W + P NR + GHP  GMS+GV E SW D REC  W   SWK RP      QQR  +L++DD+ CH+D+ F  +LK++ NT      + P    P+L+P  +  N+ Q  R +  +            SG  + P  G      +G  E  T    +  FKICGL   LDGS+D+ W  H FG+DY R +L EQ      +   + L  L+LP V
Sbjct:  108 FMGTPFIPPTVSGKGKSTL-PRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANT---IVIFIPGGLTPLLQPLDRMLNK-QTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDY-RDLLEEQHAVWLAEHPNVTLPPLKLPKV 343          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.220e-31
Identity = 88/241 (36.51%), Postives = 120/241 (49.79%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGRN*QGRVESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQQRAEGEDIHGIILESLQLPVVQG 956
            F+G    PP     G++   P K S+ W I P NR + GHP  GMS+GV E SW D REC  W+  SWK RP      QQR  +L++DD+ CH+D+ F  +LK++ NT     F+ P    P+L+P  +  N+     K   RG++   RV          GR   +G+       G      FKICGL   LDGS D+   E+ FGKDY R +  EQ      +   + L  L+LP + G
Sbjct:  471 FKGTPFIPPTVSGKGKSTL-PRKNSVAWEIHPVNRVKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTI--VIFFIPGGLTPLLQPLDRMLNKQM---KRLLRGKHRLQRVG---------GRRRPVGEAEATGAWGRLYVTCFKICGLTLALDGSKDHARCEYNFGKDY-RDLFEEQHAVWLAEHPDVTLPPLKLPKIPG 695          
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.190e-29
Identity = 80/224 (35.71%), Postives = 110/224 (49.11%), Query Frame = 3
Query:  237 FQGHAVHPPDAVSHGEAACAPLKGSIPWSISPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*TSLCGQQRS-VLMIDDYTCHRDQKFQESLKKEVNTGHHPHFWRPNSG*PVLRPHAKQGNEAQGARKIHFRGR------N*QGRVESG*TQAPREGRGVNMGQGRLEPNTG*PERKYFKICGLNFNLDGSDDYQWSEHTFGKDYYRTILTEQ 887
            F+G    PP     G++   P K S+ W I PANR + GHP  G+S+GV E SW D REC  W+   WK RP      QQR  +L++DD+  H+D+ F  +LK++ NT      + P    P+L+P     N+     K   RG+      +      SG  + P  G      +   E  T    +  FKICGL   LDGS+D+ W EH  G+DY R +  EQ
Sbjct:   55 FKGTPFTPPTVSGKGKSTL-PRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANT---IVIFIPGGLTPLLQPLDCMLNKQM---KRLLRGKYIAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNVGEDY-RDLFEEQ 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9240.17033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRZ1_9PHAE1.040e-3638.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K3D3_9PHAE6.470e-3638.55C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K6L9_9PHAE2.100e-3536.48DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKC9_9PHAE5.340e-3538.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE5.890e-3538.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE9.560e-3435.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEE8_9PHAE1.530e-3338.13DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE8.000e-3335.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRF0_9PHAE3.220e-3136.51DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE1.190e-2935.71DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9240contigH-paniculata_contig9240:7197..8513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue7.6e-15
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size1317
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9240.17033.1prot_H-paniculata_contig9240.17033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9240 7223..7651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.962042-UTR-H-paniculata_contig9240:7196..72221622931149.962042-UTR-H-paniculata_contig9240:7196..7222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9240 7197..7222 +
1691481613.1637874-UTR-H-paniculata_contig9240:7196..72221691481613.1637874-UTR-H-paniculata_contig9240:7196..7222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9240 7197..7222 +
1622931149.9834614-UTR-H-paniculata_contig9240:7651..85131622931149.9834614-UTR-H-paniculata_contig9240:7651..8513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9240 7652..8513 +
1691481613.1849294-UTR-H-paniculata_contig9240:7651..85131691481613.1849294-UTR-H-paniculata_contig9240:7651..8513Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9240 7652..8513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.972955-CDS-H-paniculata_contig9240:7222..76511622931149.972955-CDS-H-paniculata_contig9240:7222..7651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9240 7223..7651 +
1691481613.1763313-CDS-H-paniculata_contig9240:7222..76511691481613.1763313-CDS-H-paniculata_contig9240:7222..7651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9240 7223..7651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9240.17033.1

>prot_H-paniculata_contig9240.17033.1 ID=prot_H-paniculata_contig9240.17033.1|Name=mRNA_H-paniculata_contig9240.17033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MGVRYAPGADRKKTHSMWVQVHGNIMVRTHVPTTKMYLYSTVGRHSVVMS
AITKRRDNTRRCTKCDSAHYFQGHAVHPPDAVSHGEAACAPLKGSIPWSI
SPANRRRCGHPLKGMSYGVHEHSWCDNRECKLWLRESWKSRP*
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mRNA from alignment at H-paniculata_contig9240:7197..8513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9240.17033.1 ID=mRNA_H-paniculata_contig9240.17033.1|Name=mRNA_H-paniculata_contig9240.17033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1317bp|location=Sequence derived from alignment at H-paniculata_contig9240:7197..8513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGAAAGGGAAGAAGCCCTTGCAAATGGGGGTGCGATACGCACCGGGT GCAGACAGGAAAAAAACTCACTCCATGTGGGTGCAGGTACACGGCAATAT CATGGTACGCACACACGTACCGACAACGAAAATGTACCTCTACAGTACAG TAGGCAGGCATTCAGTAGTCATGAGTGCAATCACTAAACGAAGAGACAAT ACCAGGCGATGCACGAAATGTGACTCCGCGCATTACTTTCAAGGGCATGC CGTTCATCCCCCCGATGCAGTCTCACACGGGGAGGCCGCCTGCGCACCGC TGAAGGGTTCCATTCCGTGGTCGATCAGTCCAGCCAACCGCCGGCGATGT GGGCACCCATTGAAGGGCATGTCGTATGGAGTGCACGAACACAGCTGGTG TGACAATCGGGAGTGCAAGCTGTGGCTGCGGGAAAGCTGGAAGAGTCGCC CTTGAACAAGCTTGTGTGGACAGCAACGGAGCGTGTTGATGATCGACGAC TACACGTGCCACCGCGACCAGAAGTTCCAGGAGAGCTTGAAGAAGGAGGT CAACACAGGACACCATCCTCATTTCTGGCGGCCTAACAGCGGTTAACCAG TCTTGCGACCGCATGCTAAACAAGGAAATGAAGCGCAGGGTGCACGGAAA ATACACTTCCGGGGGCGCAACTAACAGGGCAGAGTCGAGAGCGGGTAAAC TCAAGCCCCCCGGGAGGGGCGCGGTGTCAACATGGGTCAAGGACGTCTGG AACCAAATACTGGCTGACCCGAGAGGAAGTACTTCAAGATTTGCGGACTC AATTTCAACCTCGATGGGAGCGATGACTACCAGTGGTCTGAGCACACGTT CGGCAAGGACTATTATCGCACGATCCTGACGGAGCAGCAGCGGGCCGAGG GTGAGGATATTCATGGCATCATCCTGGAGTCGCTACAGCTACCCGTTGTA CAGGGGTAATGGACAGCCCCCAAACTCCCATCACCAATAATACATTGAAG GATGTTAGAGATAAGTTAGCCAAGAACCCGAAGAACGGGGATGAAAGCGC GACGACGAGAACGATGGGAGCGACATCGAGGCGTTCGATGTTATTGGCTT GAGGGATGACTCCAATTCCGACGTCGAACTGCTGTAGGGTCGGCTTTTGT CGTGTGCTTGTTCAGTTCGCAGCTGTTTCAAAGGGCTGAAGGGACAGGAC CTATCTGTTGCTGGCTGCGTTTACTTTTTGGTTTCTTTTGTTTCTGTTTG CTTTTTTCCCATGTTTCTGGAGCCGTCGTACATATATGTCAGAGTTTTCA ATCTATTTATTCCCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9240:7197..8513+

>mRNA_H-paniculata_contig9240.17033.1 ID=mRNA_H-paniculata_contig9240.17033.1|Name=mRNA_H-paniculata_contig9240.17033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig9240:7197..8513+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGTGCGATACGCACCGGGTGCAGACAGGAAAAAAACTCACTCCAT
GTGGGTGCAGGTACACGGCAATATCATGGTACGCACACACGTACCGACAA
CGAAAATGTACCTCTACAGTACAGTAGGCAGGCATTCAGTAGTCATGAGT
GCAATCACTAAACGAAGAGACAATACCAGGCGATGCACGAAATGTGACTC
CGCGCATTACTTTCAAGGGCATGCCGTTCATCCCCCCGATGCAGTCTCAC
ACGGGGAGGCCGCCTGCGCACCGCTGAAGGGTTCCATTCCGTGGTCGATC
AGTCCAGCCAACCGCCGGCGATGTGGGCACCCATTGAAGGGCATGTCGTA
TGGAGTGCACGAACACAGCTGGTGTGACAATCGGGAGTGCAAGCTGTGGC
TGCGGGAAAGCTGGAAGAGTCGCCCTTGAATGGGGGTGCGATACGCACCG
GGTGCAGACAGGAAAAAAACTCACTCCATGTGGGTGCAGGTACACGGCAA
TATCATGGTACGCACACACGTACCGACAACGAAAATGTACCTCTACAGTA
CAGTAGGCAGGCATTCAGTAGTCATGAGTGCAATCACTAAACGAAGAGAC
AATACCAGGCGATGCACGAAATGTGACTCCGCGCATTACTTTCAAGGGCA
TGCCGTTCATCCCCCCGATGCAGTCTCACACGGGGAGGCCGCCTGCGCAC
CGCTGAAGGGTTCCATTCCGTGGTCGATCAGTCCAGCCAACCGCCGGCGA
TGTGGGCACCCATTGAAGGGCATGTCGTATGGAGTGCACGAACACAGCTG
GTGTGACAATCGGGAGTGCAAGCTGTGGCTGCGGGAAAGCTGGAAGAGTC
GCCCTTGA
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