mRNA_H-paniculata_contig9231.17026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9231.17026.1
Unique NamemRNA_H-paniculata_contig9231.17026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9231.17026.1 vs. uniprot
Match: K8YQZ2_NANGC (Myb-like dna-binding domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQZ2_NANGC)

HSP 1 Score: 60.1 bits (144), Expect = 5.150e-8
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  147 KRGRFSKTESEAVVSSFKLYSEINGISVERLCSEEGSK-ELRGAWCRIAECLPERTVK 317
            K G+FSK+ES+A++ + + Y E + +SV RLCSE   + +L+GAW +IA+ LP RTV+
Sbjct:   78 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQ 135
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BLAST of mRNA_H-paniculata_contig9231.17026.1 vs. uniprot
Match: W7TUW0_9STRA (Myb-like dna-binding domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUW0_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.090e-7
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  147 KRGRFSKTESEAVVSSFKLYSEINGISVERLCSEEGSK-ELRGAWCRIAECLPERTVK 317
            K G+FSK+ES+A++ + + Y E + +SV RLCSE   + +L+GAW +IA+ LP RTV+
Sbjct:  213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQ 270
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BLAST of mRNA_H-paniculata_contig9231.17026.1 vs. uniprot
Match: A0A4D9CQW8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQW8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.250e-7
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  147 KRGRFSKTESEAVVSSFKLYSEINGISVERLCSEEGSK-ELRGAWCRIAECLPERTVK 317
            K G+FSK+ES+A++ + + Y E + +SV RLCSE   + +L+GAW +IA+ LP RTV+
Sbjct:  213 KTGKFSKSESQAILHAVQEYCEAHDVSVHRLCSENAHRGDLKGAWLKIAKVLPNRTVQ 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9231.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
K8YQZ2_NANGC5.150e-848.28Myb-like dna-binding domain-containing protein (Fr... [more]
W7TUW0_9STRA1.090e-748.28Myb-like dna-binding domain-containing protein n=2... [more]
A0A4D9CQW8_9STRA1.250e-748.28Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9231contigH-paniculata_contig9231:5745..7452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHomeodomain-like
Ec32 orthologEc-08_006660.2
Exons3
Model size462
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9231.17026.1prot_H-paniculata_contig9231.17026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9231 5807..7370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.7842767-UTR-H-paniculata_contig9231:5744..58061622931148.7842767-UTR-H-paniculata_contig9231:5744..5806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9231 5745..5806 +
1691481612.6304622-UTR-H-paniculata_contig9231:5744..58061691481612.6304622-UTR-H-paniculata_contig9231:5744..5806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9231 5745..5806 +
1622931148.8795638-UTR-H-paniculata_contig9231:7370..74521622931148.8795638-UTR-H-paniculata_contig9231:7370..7452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9231 7371..7452 +
1691481612.6720893-UTR-H-paniculata_contig9231:7370..74521691481612.6720893-UTR-H-paniculata_contig9231:7370..7452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9231 7371..7452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.8099296-CDS-H-paniculata_contig9231:5806..58971622931148.8099296-CDS-H-paniculata_contig9231:5806..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 5807..5897 +
1691481612.641501-CDS-H-paniculata_contig9231:5806..58971691481612.641501-CDS-H-paniculata_contig9231:5806..5897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 5807..5897 +
1622931148.832865-CDS-H-paniculata_contig9231:6624..67041622931148.832865-CDS-H-paniculata_contig9231:6624..6704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 6625..6704 +
1691481612.6514208-CDS-H-paniculata_contig9231:6624..67041691481612.6514208-CDS-H-paniculata_contig9231:6624..6704Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 6625..6704 +
1622931148.8595817-CDS-H-paniculata_contig9231:7223..73701622931148.8595817-CDS-H-paniculata_contig9231:7223..7370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 7224..7370 +
1691481612.6612606-CDS-H-paniculata_contig9231:7223..73701691481612.6612606-CDS-H-paniculata_contig9231:7223..7370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9231 7224..7370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9231.17026.1

>prot_H-paniculata_contig9231.17026.1 ID=prot_H-paniculata_contig9231.17026.1|Name=mRNA_H-paniculata_contig9231.17026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MTKRRYTRRKPQPAEREGRGWYEVGDHFKRGRFSKTESEAVVSSFKLYSE
INGISVERLCSEEGSKELRGAWCRIAECLPERTVKVQDSNRGPYCTCFCL
RLVKQ*
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mRNA from alignment at H-paniculata_contig9231:5745..7452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9231.17026.1 ID=mRNA_H-paniculata_contig9231.17026.1|Name=mRNA_H-paniculata_contig9231.17026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1708bp|location=Sequence derived from alignment at H-paniculata_contig9231:5745..7452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGCAGCTTTACTAGAGAAGCAGTGAACCTCCCTGTCTGGGATCGGCG
GAGCAGTGGGCAATGACTAAGCGTAGGTATACTAGGCGTAAGCCTCAACC
TGCAGAGCGAGAAGGTCGAGGGTGGTACGAGGTCGGAGATCATTTCAAGC
GAGGTGGGTAAAGGATGACCGATAAAACTGAGGATTTTTGCAGTTGCGCG
TTGGTCATGTTCCACGAGTCCGCTATCCCGACCGGACCGGTTCAACCATC
AAAACCGGACCCGATGAGCTACTCGGTTCGCTATTCTATCTATTTGTGCT
TGTCTTGTCTGTGTTGGATGAAGTGAAACCTTTGGACTTTGCTGCACATT
ACCAAGGTCGAAGAAACATTTTTTTTTAAAGATAGAACATAGCCTAGTCT
CAAGCAGACTACCGGTGATTTCCGTGTTGACAACTGTTACTTGGACACGT
TTAGGCTGCATCCTATGGCGGTCGAAAACCTGTTCTTCGGAAAGTTGATT
CTTGAGCGTTTTCCCGAAATTTTTGTCTCGGAATAGGTTGTTGTCGATGC
CACATGCCTTGAGAGCTATCCATTAACTAACCTCACTGATGAGCACTCCA
GCCCAACCTAATTTTCCGTTTTCTCCGGGCGTTCACTTTCCAGAAAAGAA
AAAATGCCAAAAAATTCGAACGAGGAAGAGCATGAATTCAGTTAGCCGTG
TCGGACACTTGATGGTTTACACGTGGTTTTTTGAGGCGTTGAGAAGAATG
TTTTGACGCGTGTTTGGCGCGCATTAAGATGCTGACGGCCTAGCGACGAC
CTTAGCAGCCGCTTTCTTTTTTTCGGCAACATGCCTCTTTTATCATTTTG
GTGAATGAATTGAACGGTTGCTGCCTACAGGCAGGTTCAGCAAGACCGAG
AGTGAAGCGGTGGTGTCCTCCTTCAAGCTCTATTCAGAGATCAATGGCAT
CAGCGTAGAGGTGAGTGGCTGTACATGAATTATAGCACCACTGCTTAGGT
GTTCCGATTCCATGCTGCCGCTAGGGTATCCTGATCTGCCCTCCAACGCT
CTGGTAGCATGTACTACAGTCAGTAGATATGGTGTGCTTGTTGATGGATC
GCACTGCCGTGGCTCCTTGGTGCGTACTTGGCGTTGAGTTGACCCGTGTT
TAATTGCAGGTTGATATGCATTGGGTAAACAGCATGATCCTTGCTACCCG
TGTTTTGCTGAGTTAGAGTTCAGCATGTGCCAACGAAACCTGGTCATGTC
TATACTGCTAAGCTGTCATGAATTCGCCGTTGCCCAAAAGCCCGCCGTTT
GATAAGATATGTCATCGGGCGGAGATCCTGCCTAGGGTGGGTCCTCGTGG
CGAAGTTATCTACGTCCCTGCCCTGCCGTAGCACGTAGCCCCAGATCGAA
TTGAAATATCCTTGTTTGTCATGTTAATATGTGTGTTTTCGTATGTTAAT
TGGTATCTGTCTTTTTTGCGTGCCTGCAGCGACTATGCTCAGAGGAGGGA
AGCAAGGAGTTAAGGGGAGCGTGGTGCCGGATTGCCGAATGTCTACCAGA
GCGTACCGTGAAGGTACAAGACTCCAATCGCGGCCCATATTGTACCTGTT
TCTGCCTGCGACTTGTGAAGCAATGACCCATCAGCGTTTAAACCTTAGGG
CGCGGGACCGTGTGAAATCCCTAATGAATCCCTGCTCGGACCAGACAGGC
AAAAACCA
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Coding sequence (CDS) from alignment at H-paniculata_contig9231:5745..7452+

>mRNA_H-paniculata_contig9231.17026.1 ID=mRNA_H-paniculata_contig9231.17026.1|Name=mRNA_H-paniculata_contig9231.17026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig9231:5745..7452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTAAGCGTAGGTATACTAGGCGTAAGCCTCAACCTGCAGAGCGAGA
AGGTCGAGGGTGGTACGAGGTCGGAGATCATTTCAAGCGAGATGACTAAG
CGTAGGTATACTAGGCGTAAGCCTCAACCTGCAGAGCGAGAAGGTCGAGG
GTGGTACGAGGTCGGAGATCATTTCAAGCGAGGCAGGTTCAGCAAGACCG
AGAGTGAAGCGGTGGTGTCCTCCTTCAAGCTCTATTCAGAGATCAATGGC
ATCAGCGTAGAGGCAGGTTCAGCAAGACCGAGAGTGAAGCGGTGGTGTCC
TCCTTCAAGCTCTATTCAGAGATCAATGGCATCAGCGTAGAGCGACTATG
CTCAGAGGAGGGAAGCAAGGAGTTAAGGGGAGCGTGGTGCCGGATTGCCG
AATGTCTACCAGAGCGTACCGTGAAGGTACAAGACTCCAATCGCGGCCCA
TATTGTACCTGTTTCTGCCTGCGACTTGTGAAGCAATGACGACTATGCTC
AGAGGAGGGAAGCAAGGAGTTAAGGGGAGCGTGGTGCCGGATTGCCGAAT
GTCTACCAGAGCGTACCGTGAAGGTACAAGACTCCAATCGCGGCCCATAT
TGTACCTGTTTCTGCCTGCGACTTGTGAAGCAATGA
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