mRNA_H-paniculata_contig923.17024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig923.17024.1 vs. uniprot
Match: A0A6H5KHC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC8_9PHAE) HSP 1 Score: 627 bits (1617), Expect = 2.300e-193 Identity = 551/1655 (33.29%), Postives = 754/1655 (45.56%), Query Frame = 1
Query: 1 QSLVPPSIGKQTSTHVTLFWRTTRGQRSIRTEECVNVDNSKEWINLEQDTKRDEDTESRAEKRLSKVQVLEIDHVELQTCLCGCSQCVPGVEIEKGEPTTSTRSKDSIRLGCSACLHCAKEREHAPIRGMGCWRSVYCGTERSCNVRLEQSNALQHFRLFVRARKPPPERRGYMRPMHQDAPHSDANSRSSHSPYFPQXXXXXXXXXXXXXQVQVRLPQAGANQRRQWQLDPSAGVYKSTDSCDVES-TISTLQDGLGRISRGTTF--------YRDSTPPQ------TTAATVMNGGDIMTASDGEPWQWFVSAPVFVGSLPPPVTLHGLGTTLAITWPPLSSFSGLEYVSYILEQWSRPVLQPIESETKLQSPQRQQQKPLTTTTTIGGENHATQDNLEDRGNCTTRQYMRPRSRNRRRCRPRPIAAHGNEAKEVFSVGTRCWFVPTSLVAGNVYRYRLSLLHQRGRSVAGPWASYLSSVPPPRCVDAGARCVLISLPTVC--SAAGSCVGSKRVR--TPEVEGAAKEMLSTAGAIVDTCPEE--SGENQANDISGTDGMGETLSVT--APRSRTNSGELSGEEE-----TGARYQGGNSPWEAEETETPVVRYRLKGLN-GSGRWSLIYQGSDPEVLV-------------------------------------------QGLQPNTFFSIRVTVDVDVMELRRRALGPLSSLSLEPXXXXXXXXAGDAVSRSPPLDRDADRTVNTTSLRTDDTCPETQRRCWRLGEDLPSKNLVQPAARKGVVSTGLGAGGTVSCLRITSP-GDGSGNGSQL--RSRLPWSPSTSPVMSQLKKEGFAVHDAAGTVGSGYYLERP--PWSPLGDAVESCQRDSGVRWDARGLGCVY----TCPNTSEPTVFATALQALFFTSFVLDGVPQVNVWWPTPRQLVDVDTGRRFPLPLRSSTTAPMISFAR-----------KTHSAPQKHSRG---GKKCAHSPTFFPHQQQRQQRQQYPFYVLEALDPVSTDMQP-----VYAGRNQWTNLPRISATLP---------LAPATAYFLKLSAKVSAEQPETEALGVVFTAPPAPVLELVGGGVPSSPSLAEATEENGGHGGDDTLIGVKLKVFWVNAVYKEFLPASKIPLPPVSVALEMSPAWEAGLPDRGAGGIKSRISRSTARPSTTEQAGELTPGGRETQMDVPLSSDGGDREPVDTASDDFSVVRTDAGGGMCWMLDSSTWDRAPEGTPAGAFQIVWRGFDGET-------EAFTPSLPPGMRFAFRMRVECCLGVAYSPATVYQTAFVVPRPPRGLRVSVGTHESRVGRTANCLRLSWGPSEPGHGRNVVTSFTVQARRHCGENGGDI----------------SWHDVCSCPQASCLDPDTLGMPRVTADYRVRGEGPGGCGPWCKPLPVNLVVTEES----LDAASAECTTSVLCKEGSTVATDSLLRRDRTGEPERCPMAYRRSGSTERDSLTGEARRAWGTGKVMGRPLQMRPPSPSVAAAVSGKSLAAAISMKAMASDGLHRRAGGSKQLLWGALASPREEQISRAAAAMKRGGAVGTSDGTNITVAASNGNAGNDQLNNETGCNQCETVVQQSRSF--EVGPMSSEAMPQALAMLLREELDIS 4551
+SL+PPSI + S +V L WR G+ SI+ E N+ S+EW NL++DT++ + KR V++ ++DHVELQTC CGC +C + +G+ I+ +CL C+ R G GCWR VY G C V+L Q N + FRL VRAR PPP R +MRP + SD ++ + LP ++RRQ + + + + + CD E+ T+ + L R +T YR S Q + +T + T + G+ WFVS VFV S PP VTLHG+GT L +TWP L+ +G E VSYILEQWS+ S + SP+ Q P L+ R + R + R + R P+ + + KE F+VGTRCWF+PT L G Y YRLSL+H+ G+ V G W SY +SV PPRC+ +R +++SLP +A G + R +P+ + A + + E S +N A + + G+ L S + E G E T GG E+ E P+V Y L+G + RW +Y+G PEV+V QGL+P+ R+ +DVD+ ELR R+LGPL+SL LEP A AV+ P+ A T + CP+ +R + PS AR VV L T P G G+ N R+R WSP+TSP S++++EGFA HDA+ TVG G+YLERP W L C G W+ +G C S FATA A + +FV+ PQV +WW P+ D+++ +R S+ P + AR S P + S G + A SP QQ+P + + L+P + P VY+G QW L R L LAP+TA+ + L + QPE+E VV TAPPAPV+E + V ++ + AEA E G V LK W + + +LPA I LPP+S+ALEM+ EAGL RG G ++ +++ S+ A T V +S + + + D V RTDAG G W L SS+W R A F+IVWRG +G EA P LPPGMRF FR+RVEC GVA S +TVY+TA V P P+GLR + THESR G + C+RL W PGHG NVVTSFTVQARR + D W DV SCP+ CLDP TLG+P V ADYRVR EGPGG GPWC+PL V+L+V E++ L +S + T + +++ R PM + R G+ RD LTGEARR + RPL++ AGGS QLLWGALASPR + R + A G ++ + A S G+D N+ + E V +SR+ ++ AMP LA+LLREELD+S
Sbjct: 19 KSLLPPSIVELNSDNVVLSWRAAIGRCSIQVENPDNISASQEWANLDEDTRKHQHDADGWVKRFGGVKLFDVDHVELQTC-CGCPRC-----LHEGDENGQENEDGDIKGRACSCLCCSSAR-----CGRGCWRPVYQGPHNHCRVQLVQGNRMHFFRLLVRARLPPPNMRNFMRPKNGVVSGSDPDTSGG------------VMQPNDGGSPDLSLP----DRRRQRRRNEYSRI-PTVSCCDPEAVTLLSSSPALARGGSRSTAGGGDAHACYRSSGRSQQRGGVGVSLSTPLGDESRATTAAGKN-VWFVSDSVFVDSRPPAVTLHGIGTALVLTWPALAGLTGGEQVSYILEQWSQATATMTPSVNRT-SPRTDQGVPA---------------ELDGRQK-SPRGHRRHHNHRRHLAPPKQV-----DLKEAFAVGTRCWFMPTGLKTGMRYWYRLSLIHEGGKGVGGMWVSYSTSVIPPRCIGMTSRALVLSLPRALDDTARSGSEGESQDRRNSPDRQHHADHNNKSDEHLPTPRDENRLSVDNDAEHLEALEMDGQRLGTRNLPTGSAGDKTEKHGNAEDVGVTTNQHPNGGE-----EKIEQPMVWYTLEGFSVEEKRWVALYRGPSPEVVVEVQKTTFDVETHLAHLPLLPMLQRSIRLPVDVYRNAGVPPLTQQGLEPSALVRFRLGIDVDITELRHRSLGPLASLELEPTSPDVFGFAATAVA---PVAAAAPTTCG------ESLCPKRTQR----SQTCPSP------ARSAVVRPALRLKSAAEATNQTRPIGHGASNPKTDLGRNRWQWSPATSPAASKMRREGFAFHDASATVGGGFYLERPLLSWGRL-----QCH-SGGAMWECCAIGAGAGEGGQCREYSACVEFATAPLAPRYAAFVVGESPQVKLWWAEPKP--DLESSTAPSAFVRPSSAPPFATPARGRGSHRLALVEAQESPPGRQSISVAVGDRSAVSPY----------AQQHPLFTVTLLEPATDGDHPPLRRRVYSGPQQWLGLGRYPEFLSASGAGVFAELAPSTAFAVGLCTNATDSQPESEVQAVVVTAPPAPVMEPIA--VANNSAAAEAEGEVFG--------AVTLKATWRTDIDQRYLPAG-IDLPPLSIALEMAHVSEAGLSARGVGQTAAKGAQNGQHASSPRTAALAT-------ATVAVSPTSPNTVRPSSGTRDIPV-RTDAGFGQSWTLGSSSWGRLRSW--AEEFEIVWRGEEGGAGKEKGVVEAQLPPLPPGMRFLFRVRVECPFGVAVSASTVYETARVAPLSPKGLRACLTTHESRAGNISRCVRLFWDAFHPGHGINVVTSFTVQARRLRPSSPEDQVTRDANHPHPPPTPAHPWQDVSSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDTPRNGLCLSSGXXXXXXXXXXAVSSVTFAAAEQEKRHSG-RQPMDFVRPGARARDPLTGEARRRLWANQ---RPLKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGGSNQLLWGALASPRAARGCRVERTLSSRAAPGAAEVSGFNSAIS---GGDDPENSRGPKTEGEHVGPRSRARGGRGERLAVAAMPHELALLLREELDVS 1552
BLAST of mRNA_H-paniculata_contig923.17024.1 vs. uniprot
Match: D7FTP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP8_ECTSI) HSP 1 Score: 330 bits (846), Expect = 4.750e-89 Identity = 248/634 (39.12%), Postives = 324/634 (51.10%), Query Frame = 1
Query: 2800 YAGRNQWTNLPRI---------SATLPLAPATAYFLKLSAKVSAEQPETEALGVVFTAPPAPVLELVGGGVPSSPSLAEATEENGGHGGDDTLIGVKLKVFWVNAVYKEFLPASKIPLPPVSVALEMSPAWEAGLPDRGAGGIKSRISRSTARPSTTEQAGELTPGGRETQMDVPLSSDGGDREPVDTASDDFSVVRTDAGGGMCWMLDSSTWDRAPEGTPAGAFQIVWRGFDGET-------EAFTPSLPPGMRFAFRMRVECCLGVAYSPATVYQTAFVVPRPPRGLRVSVGTHESRVGRTANCLRLSWGPSEPGHGRNVVTSFTVQARRHCGENGGDI----------------SWHDVCSCPQASCLDPDTLGMPRVTADYRVRGEGPGGCGPWCKPLPVNLVVTEESLDAASAECTTS--------------VLCKEGSTVATDSLLR-RDRTGEPERCPMAYRRSGSTERDSLTGEARRA-WGTGKVMGRPLQMRPPSPSVAAAVSGKSLAAAISMKAMASDGLHRRAGGSKQLLWGALASPREEQISRAAAAMKRGGAVGTSDGTNITVAASNGNAGNDQLNNETGCNQCETVVQQS--RSFEVGPMSSEAMPQALAMLLREELDIS 4551
Y+G QW L R LA +TA+ + L K + QPE+E VV TAPPAPV+E + V + + AEA E G V LK W + + LPA I LPP+ +ALEM+ EAGL RG G +++S++ + S+ A T V +S R T + VRTDAG G W L SS+W R+ + A F+IVWRG +G EA +P LPPGMRF FR+RVEC GVA S +TVY+TA VVP P+GLR + THESR G T+ C+RL W PGHG+NV+TSFTVQARR + D W VCSCP+ CLDP TLG+P V ADYRVR EGPGG GPWC+PL V+L+V E++ + C S C+ V++ + + + R PM + R G+ RD LTGEARR W V RPL++ PP +VA V ++ A + ++ R AGGS QLLWGALASPR + R + A G + + A S G+D N+ + E V +S R ++ AMP LA+LLREELD+S
Sbjct: 748 YSGLRQWLGLGRYPEFFSANGAGVCAELATSTAFAVGLCTKATDSQPESEVQAVVVTAPPAPVMEPIA--VANDSAAAEAEGEVFG--------AVTLKATWRTDIDQRHLPAG-IDLPPLLIALEMAHIPEAGLSARGVGETAAKVSQNGQQASSPGTAALTTATATVDGRAVSPTSPNTARPSSGTQN---IPVRTDAGFGQSWTLGSSSWGRSR--SRAEEFEIVWRGEEGGAGTEKGVVEAQSPPLPPGMRFLFRVRVECRFGVAVSASTVYETAPVVPLSPKGLRACLATHESRAGNTSRCVRLLWDAFHPGHGKNVITSFTVQARRPRPSSPEDQVTRDANHPHPPPTPAHPWQVVCSCPEIGCLDPATLGVPHVLADYRVRAEGPGGKGPWCEPLRVDLLVQEDT--PRNGLCLPSGGXXXXXXXXXXXXXXCESSGAVSSVTFVAAKQEKRHSGRQPMDFVRPGARARDPLTGEARRRLW----VNQRPLKVPPPPAAVATLVLPGAVVTARTRTTAMAEHRCRLAGGSNQLLWGALASPRAARGCRVEGTLSSRAAPGAAGVSGFNRAIS---GGDDPENSRGPKTEGEHVGPRSPARGGRGERLAVAAMPHELALLLREELDVS 1356 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig923.17024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig923.17024.1 >prot_H-paniculata_contig923.17024.1 ID=prot_H-paniculata_contig923.17024.1|Name=mRNA_H-paniculata_contig923.17024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1517bp QSLVPPSIGKQTSTHVTLFWRTTRGQRSIRTEECVNVDNSKEWINLEQDTback to top mRNA from alignment at H-paniculata_contig923:6417..15486- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig923.17024.1 ID=mRNA_H-paniculata_contig923.17024.1|Name=mRNA_H-paniculata_contig923.17024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9070bp|location=Sequence derived from alignment at H-paniculata_contig923:6417..15486- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig923:6417..15486- >mRNA_H-paniculata_contig923.17024.1 ID=mRNA_H-paniculata_contig923.17024.1|Name=mRNA_H-paniculata_contig923.17024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9102bp|location=Sequence derived from alignment at H-paniculata_contig923:6417..15486- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |