mRNA_H-paniculata_contig9200.17009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9200.17009.1
Unique NamemRNA_H-paniculata_contig9200.17009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9200.17009.1 vs. uniprot
Match: A0A6H5KFP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP0_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.010e-41
Identity = 122/306 (39.87%), Postives = 145/306 (47.39%), Query Frame = 2 
Query:  524 LEVIEQVAGMVGGILEFPLTGMFGRLLPAGGSKAGQQVATAVGTGLDNLGSLCSQTGLDRWELLGLAVLSAITVYRKELSSNSVHRTGAKQQQGAGAASLRIEGEETGVTNDLDINGEHDERFSNSSVSRAAFTIPPGFQHKDGCFITLRNKRKSDPDIDNGTVSGQQPPCSQQEP--TPCECLLAXXXXXXXXXXSPNSLPPSAVEQRKLRRLVEGRMRSLGLPV-----HHLQQLRASVDKSWLLFAAAWGETLRSRHGSGAPAANKGMKEGDRDDFLTSSSVSGVGSPSPASGAFVLPPCSHR 1420
            +E IE + GMV  +LEFPL G  GRL+P GGS+AGQQVATAVG GLDNLGSLCSQ GLDRWELLGLAVLSAITVYRKELSSNSV+  G     GAGA   R                             +A  +     H DGC + +                             T   C+ A          S       A ++R+L  LV GR   +  P+     +HLQQLRASVD SW  F+ AW    R   GSG+     G  +G              G P P +  FV+PPC+HR
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVGVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG-----GAGAGGRRY--------------------HRTGGDGGSAVVV-----HVDGCHVAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGKPCMCARIAAQQRQRASAARRLRQAEDERRLESLVAGRTAMMIRPLDLSANNHLQQLRASVDASWSSFSTAWD--ARRARGSGS-----GSTDG--------------GGPLPPAAGFVMPPCTHR 255
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BLAST of mRNA_H-paniculata_contig9200.17009.1 vs. uniprot
Match: D7FI18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI18_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 4.970e-34
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:  524 LEVIEQVAGMVGGILEFPLTGMFGRLLPAGGSKAGQQVATAVGTGLDNLGSLCSQTGLDRWELLGLAVLSAITVYRKELSSNSVHRTG 787
            +E IE + GMV  +LEFPL G  GRL+P GGS+AGQQVATAV  GLDNLGSLCSQ GLDRWELLGLAVLSAITVYRKELSSNSV+  G
Sbjct:    1 MEAIELLGGMVNSVLEFPLVGFLGRLVPVGGSEAGQQVATAVAVGLDNLGSLCSQAGLDRWELLGLAVLSAITVYRKELSSNSVYGKG 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9200.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFP0_9PHAE2.010e-4139.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI18_ECTSI4.970e-3477.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9200contigH-paniculata_contig9200:3359..7242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000690.1
Exons2
Model size1520
Cds size1002
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9200.17009.1prot_H-paniculata_contig9200.17009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9200 3359..6725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.3171098-CDS-H-paniculata_contig9200:3358..42431622931146.3171098-CDS-H-paniculata_contig9200:3358..4243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9200 3359..4243 -
1691481611.6381574-CDS-H-paniculata_contig9200:3358..42431691481611.6381574-CDS-H-paniculata_contig9200:3358..4243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9200 3359..4243 -
1622931146.3335114-CDS-H-paniculata_contig9200:6608..67251622931146.3335114-CDS-H-paniculata_contig9200:6608..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9200 6609..6725 -
1691481611.6504729-CDS-H-paniculata_contig9200:6608..67251691481611.6504729-CDS-H-paniculata_contig9200:6608..6725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9200 6609..6725 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.362823-UTR-H-paniculata_contig9200:6725..72421622931146.362823-UTR-H-paniculata_contig9200:6725..7242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9200 6726..7242 -
1691481611.6608715-UTR-H-paniculata_contig9200:6725..72421691481611.6608715-UTR-H-paniculata_contig9200:6725..7242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9200 6726..7242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9200.17009.1

>prot_H-paniculata_contig9200.17009.1 ID=prot_H-paniculata_contig9200.17009.1|Name=mRNA_H-paniculata_contig9200.17009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=334bp
MVLEVIEQVAGMVGGILEFPLTGMFGRLLPAGGSKAGQQVATAVGTGLDN
LGSLCSQTGLDRWELLGLAVLSAITVYRKELSSNSVHRTGAKQQQGAGAA
SLRIEGEETGVTNDLDINGEHDERFSNSSVSRAAFTIPPGFQHKDGCFIT
LRNKRKSDPDIDNGTVSGQQPPCSQQEPTPCECLLAVAAAAAAAAASPNS
LPPSAVEQRKLRRLVEGRMRSLGLPVHHLQQLRASVDKSWLLFAAAWGET
LRSRHGSGAPAANKGMKEGDRDDFLTSSSVSGVGSPSPASGAFVLPPCSH
RFHRTKSRTGRSAKKGTVNNSDEQGHRGAWSGDG
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mRNA from alignment at H-paniculata_contig9200:3359..7242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9200.17009.1 ID=mRNA_H-paniculata_contig9200.17009.1|Name=mRNA_H-paniculata_contig9200.17009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3884bp|location=Sequence derived from alignment at H-paniculata_contig9200:3359..7242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGACTCCTGTGTGCTGAAGGATGATAAGAGAGAGGAAGCATTCCTGA
TACTCCCGGTACTTTTTTTCGTGGAAGAAGAAGGGAGGGAAGAAGAGAAG
GAGGAAGAGAGTGAAGGAAGGAGGAAGCTAGGGAAGGAGGGAAAACCGAT
GACTGTACATATCTGCCCTTGAGGAGAGATCAAACCTCGAATGCAAAGAA
TCGGAGAATTTTTTGCCAGCACACTTTTTGTTGAGAAGCTACAACTGTTC
AGAGGTGATCGGGGTTCTTTGCAGCCCAAGCTGTTCATCTATCAGCAACA
CAACGCTCATCTTGTTCGATCATAAAACGTGCTGTGAAACTTCCGACGTG
CTGACTTTGGGGAGCCATATCGACCCGAACAGAATAGTGCAGGCTCTTCT
ACATAGCGCACCTGTTTCATCTGCTACTGCGGTGTGCAGTGGTTTTTCGG
TAAGCGGGGGCACAGATCTCACTGTGTAAGGGGAGCAAGTCAAGGTTACT
AACCCAACGACAGAATAATGGTGCTGGAGGTGATCGAGCAAGTGGCCGGG
ATGGTTGGGGGTATCCTCGAGTTCCCTCTCACTGGCATGTTCGGACGGCT
GTTACCTGCTGGGGGCAGTAAGGCGGGACAGCAGGTGGGGATTCACTCGA
GGATGCACTCCCCGTCTGGGTGTAGTACCGTGGATTTGCGACCTGAAGAG
ATGGCGTGTGCTATGTTCGTTTCCCACAATAAATGAGAAGAGAAATCTAG
AAGAACCGTTTTCGAGAGGATTGTATACGGACTGGTAACTGTTTGAGTGA
TGCCCTATTTTCAAAGATGTTAGTAAAATTTAATTCAAGGACGACACCAT
TTGTTGAATGTGACTCTCTGATTTCTAGTTTGATTATGCATCCACGGCCT
GGTGGGTGAGGGCGCTGGGTCTGCTTACTGGCTGTATCACTTTCGTCCAT
GACCACTTTCGAAAATACAGAAGAGAGAAAGTGTCTTCGTTGCCAGCTTC
AACGACCTTCTCGTTGTTCCTGTGAACGCCTGCCAGCGGGGGGGTTGGAA
AGTACAGCAGATTAGGGAGAAGCAGTACGAAACCGCCCGCCCCCCGTTGC
ATATTTGTCGCGTTTACACTATTTAGCCTAGAGCTTGAAAATTTGATTCC
CCCATCATTAATTCCTCGGCACTAACAAAGTGTCGTTTTGTACATGTTTA
GCGCGGGAGAAAAGAAAGGAAGGGATTTTTTTTTTTTTGGTATAATGTGA
AGAGCACGTTCCTGACGTTCCTGAACCTCGACTCAATCGACGGCATTTTG
TCCGTTTCTCGGAATATCTTTTTTAGGTCCTTCCAACCCTGGATGGCTAA
TTCATCAACAACAGAACAAAAACCAAGTGCGTCGTCCGCAATACACCTCA
AGACTTACAACCATCCCGGAGGGCAGGCGGTGTCCCCTCAGATGTAGTCT
TTCGTGGGAGCATTATGTTTTCAACAAAAAAAATGGGGATAATGATAGTG
GAAATAGCGACATGTACTGTCTTCACCGTAATTTGGATTTTTTTGAGACA
CCACTGTAATACGAAAGCAGATAGTAGCAAATCCTAAAACCGCTGCACAA
ACTATTTACAATATTCGACATGGCGCACAGCACACAACTCCGTGCAGTCA
ACATCAATTAGGGAGCCAAGGAGCGCCTGGTCAAGCATTGTATGCTGACG
CTGTGTGGTATCTTGTATCGGGTCGACTCTGTCTTCGGGTGTAATCACCC
TCTCCCATTCATTGGTATCAGGGGTGTTCCCGACAAGGGCTTTTGGAAAA
TGAACATACGGTACGGTGAAGGATCTCCTTGGTATCGTGTCGATTAATCG
TACGTGGCATGTCGGTAACAAGGTATAGCACGGTACGGTATATGGATTTC
TCGCTATTTGCGCGGTAAACGGTATCGCAGTAGCGTCTTCCCCCTCCTGC
AGTACACCACGGTGTCTGGTTCTCTCGGCATCGTGCTGTGGGGTACCTGA
AATTTGGTACGTCGATGCCCAAGCTTATGGTACAGTCCATAATCCCCACG
TGAGAGGTAATGACTGTATGTTAGCAGGTATTCCACAAGGAGGCGACTCA
TGAGGCACCGAGAGCTCGTCCCACCAAGGAAGTTCGCAGTTTGAAGGCAA
AAGGCCATACGATGCCATAGAATTATTGAGCACGATACAATCGCCCCCTT
TTCCAGCGTGGTGAGTATGTGACGGACCTCTATGACGCATGATTCTCGTA
AGAAAAAAAAGAAGCACGTCAATTGTTTGAAAGTGTCGTGACCATTAGGC
CGTTTTTTGGTCCGGAAAAAGTCACGTTTGAAAAAACAATCTTCGATGCG
AAGTGGCGTTCCTATACATAGTTTTCCGTCAAGGATATTTCGAGACCCGC
CTCCAACACAGTCAGTACACAACTTTGCCGTCGAGGTCTCGATCCGCACA
TCGACAATCGGAGCGAAATTTCTTGCATCATCTACCGATACGCCAGTATG
GGTCGTGCCAACTGAGAATGCTGGTGTGGCTTGCTGCAGTCGCTCTGGCA
ATACTGATGACGAGTAACCGTCTTTCAGCTTTTCCCCGAAGCATGTTTTT
CCACTGAAAAGAAAAAAGAATTTCTCGACGAGGTCTCCGTGTTTCGAGCA
AAGTAACCGTGTCCCCCGAGGCTCCCCTGCGTATGCCTCACCCGCAGCAA
TATAGAGTGGGTAAATGTTGTAAGTGTTGATTGATTGACAGGCGTTGCCC
ACGTGCTTCTTCCTCGAGAACCAAAATCCGCTTAGGGCGGCGGGATCCGA
TCTACTTTCGAAAAAAATCTCCCGCTGGAAACGTGCCTCTCTGCGAAAAA
GATCCATTTACCTGGATTGCTGCCGTCAGTAATCATCCTGAAAGAAGAGT
CCGACTTTTTCTTGTCTCCCACTGTCTGTACACGCCCGATCTTCCAAGCG
CTACCCCAACCCACCCATGCACCCATCGACCACACGTACGCATCAACAGG
TTGCGACAGCTGTGGGAACTGGACTCGATAACCTGGGTTCCCTATGTTCG
CAGACCGGATTAGACCGTTGGGAGCTGCTAGGCTTGGCGGTGCTGTCAGC
CATCACGGTGTACCGTAAAGAGCTCTCCTCCAACAGCGTACACCGCACAG
GCGCAAAGCAGCAGCAAGGCGCGGGAGCGGCATCATTGCGAATCGAGGGC
GAAGAAACAGGAGTCACGAACGACTTGGATATTAATGGTGAACACGACGA
AAGATTCAGCAACAGCAGCGTTAGTCGTGCAGCGTTTACAATCCCACCGG
GGTTTCAACACAAGGATGGATGTTTCATAACTCTGAGAAATAAGAGAAAA
TCTGACCCTGACATTGACAATGGCACCGTTTCGGGACAACAACCACCCTG
CTCGCAACAAGAACCCACGCCATGTGAGTGCCTCCTAGCCGTCGCTGCAG
CCGCCGCCGCTGCAGCTGCATCTCCCAATTCCCTACCACCATCGGCTGTA
GAGCAACGGAAATTGCGGAGGCTGGTAGAAGGGAGGATGCGATCGCTCGG
CTTGCCAGTGCACCACCTGCAACAGCTGCGCGCCTCGGTGGACAAGTCAT
GGTTGTTGTTTGCAGCGGCTTGGGGGGAAACGCTGCGATCTCGTCATGGC
AGCGGGGCACCAGCGGCGAATAAGGGCATGAAGGAAGGGGACAGAGACGA
TTTTTTGACCTCGTCTTCGGTGTCGGGTGTAGGATCCCCGTCTCCTGCCA
GTGGTGCGTTTGTTTTGCCCCCATGCTCTCACCGGTTCCACCGGACCAAG
TCCAGAACAGGGCGTAGCGCTAAAAAAGGAACGGTAAACAACAGCGACGA
GCAAGGGCATCGAGGAGCGTGGAGTGGTGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9200:3359..7242-

>mRNA_H-paniculata_contig9200.17009.1 ID=mRNA_H-paniculata_contig9200.17009.1|Name=mRNA_H-paniculata_contig9200.17009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig9200:3359..7242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGGAGGTGATCGAGCAAGTGGCCGGGATGGTTGGGGGTATCCT
CGAGTTCCCTCTCACTGGCATGTTCGGACGGCTGTTACCTGCTGGGGGCA
GTAAGGCGGGACAGCAGATGGTGCTGGAGGTGATCGAGCAAGTGGCCGGG
ATGGTTGGGGGTATCCTCGAGTTCCCTCTCACTGGCATGTTCGGACGGCT
GTTACCTGCTGGGGGCAGTAAGGCGGGACAGCAGGTTGCGACAGCTGTGG
GAACTGGACTCGATAACCTGGGTTCCCTATGTTCGCAGACCGGATTAGAC
CGTTGGGAGCTGCTAGGCTTGGCGGTGCTGTCAGCCATCACGGTGTACCG
TAAAGAGCTCTCCTCCAACAGCGTACACCGCACAGGCGCAAAGCAGCAGC
AAGGCGCGGGAGCGGCATCATTGCGAATCGAGGGCGAAGAAACAGGAGTC
ACGAACGACTTGGATATTAATGGTGAACACGACGAAAGATTCAGCAACAG
CAGCGTTAGTCGTGCAGCGTTTACAATCCCACCGGGGTTTCAACACAAGG
ATGGATGTTTCATAACTCTGAGAAATAAGAGAAAATCTGACCCTGACATT
GACAATGGCACCGTTTCGGGACAACAACCACCCTGCTCGCAACAAGAACC
CACGCCATGTGAGTGCCTCCTAGCCGTCGCTGCAGCCGCCGCCGCTGCAG
CTGCATCTCCCAATTCCCTACCACCATCGGCTGTAGAGCAACGGAAATTG
CGGAGGCTGGTAGAAGGGAGGATGCGATCGCTCGGCTTGCCAGTGCACCA
CCTGCAACAGCTGCGCGCCTCGGTGGACAAGTCATGGTTGTTGTTTGCAG
CGGCTTGGGGGGAAACGCTGCGATCTCGTCATGGCAGCGGGGCACCAGCG
GCGAATAAGGGCATGAAGGAAGGGGACAGAGACGATTTTTTGACCTCGTC
TTCGGTGTCGGGTGTAGGATCCCCGTCTCCTGCCAGTGGTGCGTTTGTTT
TGCCCCCATGCTCTCACCGGTTCCACCGGACCAAGTCCAGAACAGGGCGT
AGCGCTAAAAAAGGAACGGTAAACAACAGCGACGAGCAAGGGCATCGAGG
AGCGTGGAGTGGTGACGGGGTTGCGACAGCTGTGGGAACTGGACTCGATA
ACCTGGGTTCCCTATGTTCGCAGACCGGATTAGACCGTTGGGAGCTGCTA
GGCTTGGCGGTGCTGTCAGCCATCACGGTGTACCGTAAAGAGCTCTCCTC
CAACAGCGTACACCGCACAGGCGCAAAGCAGCAGCAAGGCGCGGGAGCGG
CATCATTGCGAATCGAGGGCGAAGAAACAGGAGTCACGAACGACTTGGAT
ATTAATGGTGAACACGACGAAAGATTCAGCAACAGCAGCGTTAGTCGTGC
AGCGTTTACAATCCCACCGGGGTTTCAACACAAGGATGGATGTTTCATAA
CTCTGAGAAATAAGAGAAAATCTGACCCTGACATTGACAATGGCACCGTT
TCGGGACAACAACCACCCTGCTCGCAACAAGAACCCACGCCATGTGAGTG
CCTCCTAGCCGTCGCTGCAGCCGCCGCCGCTGCAGCTGCATCTCCCAATT
CCCTACCACCATCGGCTGTAGAGCAACGGAAATTGCGGAGGCTGGTAGAA
GGGAGGATGCGATCGCTCGGCTTGCCAGTGCACCACCTGCAACAGCTGCG
CGCCTCGGTGGACAAGTCATGGTTGTTGTTTGCAGCGGCTTGGGGGGAAA
CGCTGCGATCTCGTCATGGCAGCGGGGCACCAGCGGCGAATAAGGGCATG
AAGGAAGGGGACAGAGACGATTTTTTGACCTCGTCTTCGGTGTCGGGTGT
AGGATCCCCGTCTCCTGCCAGTGGTGCGTTTGTTTTGCCCCCATGCTCTC
ACCGGTTCCACCGGACCAAGTCCAGAACAGGGCGTAGCGCTAAAAAAGGA
ACGGTAAACAACAGCGACGAGCAAGGGCATCGAGGAGCGTGGAGTGGTGA
CGGG
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