mRNA_H-paniculata_contig9197.16999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9197.16999.1
Unique NamemRNA_H-paniculata_contig9197.16999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9197.16999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9197contigH-paniculata_contig9197:5637..5988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.2507381-UTR-H-paniculata_contig9197:5636..56671622931144.2507381-UTR-H-paniculata_contig9197:5636..5667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9197 5637..5667 +
1691481610.7247293-UTR-H-paniculata_contig9197:5636..56671691481610.7247293-UTR-H-paniculata_contig9197:5636..5667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9197 5637..5667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.2664642-CDS-H-paniculata_contig9197:5667..59881622931144.2664642-CDS-H-paniculata_contig9197:5667..5988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 5668..5988 +
1691481610.740655-CDS-H-paniculata_contig9197:5667..59881691481610.740655-CDS-H-paniculata_contig9197:5667..5988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 5668..5988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9197.16999.1prot_H-paniculata_contig9197.16999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9197 5668..5988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9197.16999.1

>prot_H-paniculata_contig9197.16999.1 ID=prot_H-paniculata_contig9197.16999.1|Name=mRNA_H-paniculata_contig9197.16999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MGAPPHTSVGFLERQPLHRAPPARQQDEGKDGENAEDIRKSGGAFANTAA
ATPTVTASGTATSAENPVGSRKSSDISDKAAVASVDVLAIKRGNGVGVAT
EECIATA
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mRNA from alignment at H-paniculata_contig9197:5637..5988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9197.16999.1 ID=mRNA_H-paniculata_contig9197.16999.1|Name=mRNA_H-paniculata_contig9197.16999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=352bp|location=Sequence derived from alignment at H-paniculata_contig9197:5637..5988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTTCCTCGGCGCTATCTTCCTCTCAGCGTATGGGTGCTCCTCCGCACA
CCAGTGTTGGCTTTCTGGAAAGGCAGCCGTTACACCGTGCACCCCCCGCG
CGCCAACAGGACGAAGGAAAGGACGGTGAGAATGCCGAGGATATCCGTAA
GAGTGGTGGCGCCTTCGCCAACACTGCTGCTGCTACTCCTACTGTAACTG
CTAGTGGTACTGCTACTTCTGCTGAGAATCCCGTTGGTTCGAGAAAATCA
AGCGATATATCCGACAAAGCGGCTGTGGCGTCTGTCGACGTATTGGCAAT
AAAAAGAGGAAATGGGGTTGGGGTGGCTACTGAAGAGTGCATCGCCACCG
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig9197:5637..5988+

>mRNA_H-paniculata_contig9197.16999.1 ID=mRNA_H-paniculata_contig9197.16999.1|Name=mRNA_H-paniculata_contig9197.16999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9197:5637..5988+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTGCTCCTCCGCACACCAGTGTTGGCTTTCTGGAAAGGCAGCCGTT
ACACCGTGCACCCCCCGCGCGCCAACAGGACGAAGGAAAGGACGGTGAGA
ATGCCGAGGATATCCGTAAGAGTGGTGGCGCCTTCGCCAACACTGCTGCT
GCTACTCCTACTGTAACTGCTAGTGGTACTGCTACTTCTGCTGAGAATCC
CGTTGGTTCGAGAAAATCAAGCGATATATCCGACAAAGCGGCTGTGGCGT
CTGTCGACGTATTGGCAATAAAAAGAGGAAATGGGGTTGGGGTGGCTACT
GAAGAGTGCATCGCCACCGCCATGGGTGCTCCTCCGCACACCAGTGTTGG
CTTTCTGGAAAGGCAGCCGTTACACCGTGCACCCCCCGCGCGCCAACAGG
ACGAAGGAAAGGACGGTGAGAATGCCGAGGATATCCGTAAGAGTGGTGGC
GCCTTCGCCAACACTGCTGCTGCTACTCCTACTGTAACTGCTAGTGGTAC
TGCTACTTCTGCTGAGAATCCCGTTGGTTCGAGAAAATCAAGCGATATAT
CCGACAAAGCGGCTGTGGCGTCTGTCGACGTATTGGCAATAAAAAGAGGA
AATGGGGTTGGGGTGGCTACTGAAGAGTGCATCGCCACCGCC
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