mRNA_H-paniculata_contig9197.16998.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9197.16998.1
Unique NamemRNA_H-paniculata_contig9197.16998.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9197.16998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9197contigH-paniculata_contig9197:3791..5461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size361
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.391058-CDS-H-paniculata_contig9197:3790..38471622931144.391058-CDS-H-paniculata_contig9197:3790..3847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 3791..3847 +
1691481610.7777963-CDS-H-paniculata_contig9197:3790..38471691481610.7777963-CDS-H-paniculata_contig9197:3790..3847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 3791..3847 +
1622931144.4038384-CDS-H-paniculata_contig9197:5157..54601622931144.4038384-CDS-H-paniculata_contig9197:5157..5460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 5158..5460 +
1691481610.802467-CDS-H-paniculata_contig9197:5157..54601691481610.802467-CDS-H-paniculata_contig9197:5157..5460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9197 5158..5460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9197.16998.1prot_H-paniculata_contig9197.16998.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9197 3791..5460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9197.16998.1

>prot_H-paniculata_contig9197.16998.1 ID=prot_H-paniculata_contig9197.16998.1|Name=mRNA_H-paniculata_contig9197.16998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
RLTRKRQKRVKLMFHERGQITQAAQFISRPDVSALGICNEEQLQVIVKEK
RRLWKRLIEIGAYWEKVCGSKITSTVRDSLATRLTSPAATRAVATCSQAT
AAAAAVEASVAMAAAPSLGT
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mRNA from alignment at H-paniculata_contig9197:3791..5461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9197.16998.1 ID=mRNA_H-paniculata_contig9197.16998.1|Name=mRNA_H-paniculata_contig9197.16998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1671bp|location=Sequence derived from alignment at H-paniculata_contig9197:3791..5461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTGACCAGGAAACGTCAAAAGCGGGTAAAGTTGATGTTTCACGAACG
CGGCCAGGTGGGACAGGGCGGGATGAGCGTTGTGTTTTTTGTGTGTGCTC
TTAGCCGCTTGATCTTTGCACAGGGCGTGCTCGAACAATCGGTAGAGAGT
AGAAGTGATGAACCGCTTGTGCTCGTCATCGTGAAGAAAAGTTATCTGAG
TGGGCTTCGATACGCGGTGACTTATTCGTTCAACTGGTAAAGCAAATTTT
GCGCTCTTCAGTTGTAAGTATGTGTCTGATTTTCAATTTTCTCCCAACCT
TTTTGCCTTGGTGGTACTGTCCTGCTGAGTGCGCCCCCCCTGCGGACCGT
CATCTCTAGGATGCGTCATCAAGTATCTATACGGAAGGGTATGTAAAATA
TGAGTAGGCCCCCCCCTCCCCTCCCGGGGTGTACTCGTGTTTTCCATGTC
AAAGTTGTTAGGTCATTTACCACGCATCATCGGGAGAACGGAGCTTTGTT
TCTGTTCCTCCAAGCGTTGTGTTTACGGCCATAAATTGCCGATGGCCGAT
AGCTGCATTATTTTCTGCCGCAAATGGTCCCTTTTCCTACTCCATAAATC
GCTAAAAAACATTTGCCTCGTCGGGCAACAGGGCGATCCCCCATGACATT
GTTGGGCGCGCGTAGGGACACGATATTTGATTGTGGAGGATGAAGTACTT
GTATATGCCTTGTAAGGTTTGCAGTAAATAGGATGCTTTTGAAAGCAACT
AAGCAGGATGGGCGGTATTTGGAGACCAGTTTCCAAAGTTAATGGTATCA
GACGCTTACTAGACAGTGTTCATATGTATTCGATTGATAAAACAGCAAGG
TTTGGGAGACAGGGGTGCCGAGGGCCAACGTTCTGTTCTCGTTTGGCCGA
GAACCCTCGCGGACAGTCTGATACCCTTCATAGTTGGAAGGCTTGTACGG
ACAGACTTATAGTGCGCTGGTCATAGCTTGACACTGCTCATTTTTGTAGT
CTCGCTACTGTTGCAGTATCTTCGATCCTGAGACCCTATGGTGTAGTATG
ACGGAAAATCGCCCAAAGCATGCAGCAGAGTTTTCGCCACATGTTCATTC
AGTTCCTTGGATTCGACCTACAGAATAATGAGCACGCCTAAAGCGTAAGG
TGGTATTGTAGAACAACTCTCCTTGCCACGTTGCTTGTTATGCTCACATT
TACAAGATAAAATTGTGTAAGCGTCTCCACCTACCATCAAAATATGTCTG
ATGCACGCACCTCATAAGAATATGAGTGATTCTCTTACGCCCTCCCACGC
CCTCTTTGTTCCCCGTCTTCCCTACTGTGCCCACGCTTGACACAACGATT
TCTTTTTCCATCTTCAGATCACCCAAGCCGCGCAATTTATCTCTCGGCCA
GATGTGTCTGCCCTCGGAATTTGCAACGAGGAGCAGCTGCAAGTTATTGT
CAAGGAGAAGCGGCGCCTGTGGAAACGGCTGATCGAGATAGGCGCATATT
GGGAAAAGGTATGTGGCTCGAAAATCACGTCGACCGTGCGTGACTCGCTC
GCCACCAGGCTCACCAGCCCTGCAGCAACGAGGGCGGTGGCGACTTGTAG
TCAGGCGACCGCGGCGGCGGCGGCGGTGGAAGCTTCTGTTGCTATGGCTG
CAGCACCTTCGTTAGGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9197:3791..5461+

>mRNA_H-paniculata_contig9197.16998.1 ID=mRNA_H-paniculata_contig9197.16998.1|Name=mRNA_H-paniculata_contig9197.16998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig9197:3791..5461+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACTGACCAGGAAACGTCAAAAGCGGGTAAAGTTGATGTTTCACGAACG
CGGCCAGCGACTGACCAGGAAACGTCAAAAGCGGGTAAAGTTGATGTTTC
ACGAACGCGGCCAGATCACCCAAGCCGCGCAATTTATCTCTCGGCCAGAT
GTGTCTGCCCTCGGAATTTGCAACGAGGAGCAGCTGCAAGTTATTGTCAA
GGAGAAGCGGCGCCTGTGGAAACGGCTGATCGAGATAGGCGCATATTGGG
AAAAGGTATGTGGCTCGAAAATCACGTCGACCGTGCGTGACTCGCTCGCC
ACCAGGCTCACCAGCCCTGCAGCAACGAGGGCGGTGGCGACTTGTAGTCA
GGCGACCGCGGCGGCGGCGGCGGTGGAAGCTTCTGTTGCTATGGCTGCAG
CACCTTCGTTAGGAACAATCACCCAAGCCGCGCAATTTATCTCTCGGCCA
GATGTGTCTGCCCTCGGAATTTGCAACGAGGAGCAGCTGCAAGTTATTGT
CAAGGAGAAGCGGCGCCTGTGGAAACGGCTGATCGAGATAGGCGCATATT
GGGAAAAGGTATGTGGCTCGAAAATCACGTCGACCGTGCGTGACTCGCTC
GCCACCAGGCTCACCAGCCCTGCAGCAACGAGGGCGGTGGCGACTTGTAG
TCAGGCGACCGCGGCGGCGGCGGCGGTGGAAGCTTCTGTTGCTATGGCTG
CAGCACCTTCGTTAGGAACA
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