mRNA_H-paniculata_contig9194.16995.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9194.16995.1 vs. uniprot
Match: D8LM05_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM05_ECTSI) HSP 1 Score: 495 bits (1275), Expect = 5.910e-164 Identity = 332/707 (46.96%), Postives = 403/707 (57.00%), Query Frame = 1
Query: 1 DGVSVDTEDATNVLARIDYIISALEKAGVPPVELQHFKKVIELTRLSEDTEDANDVADDTTDESIGNEALCKKLGRNAIVMVSSNTTIGGTLRCVTLATKDNLALEQWTTSLEKARAISPEGYLLGASIFRASQTGDISRVKELIMRGVSVNLTNVYGCNPLHYAVKHATDCAMVVARGEEEPVSDGAKMKAQEALRVLVFLVSRGADAKAVNNMGQTPLDVAARLTSGFPKARKMFISILDSSKYEVRGGAIYIFPGKSQLPLVEEK-------------------DGMDEAPD-----------------PQATVRRGGIDFSPSRRNHRAKKKEEVANSRHPHTVARS----------GPC---SGWTRPSSVAT--LPRGDHEIAIGGTNHHLAAEFAPRRGMSREASRYASTEQAIPLATGDVHSPLGGDRQTLRGRDVEVMFKNTRMARNSAILYSGSKRRR-PRAPVDSRPSTCS-----------------ISNSKSKHGNSVLVRPNPMRLRTLSRAEVPVYTGGYDTESSNACTENRKQAHRRRHIIDGERGMKMTPTAATRRQEHP----SMPDFEVRRQISEWLRKSAGTIVAVPPIGESRLGGH-LVETSAFVATDGRSEVYKALRAIKGQSRGELISAEKLRGILCRTGQPLKPAEMDELLLEADPGDTGYISCSALSKLISSNRLAPLRKGE 1899
DG+SV+TEDA +V+ARID+I+++LEKAGVPP EL HFK+V+ + AN+ A D T G EALCK+LGR AI+MVS +GGTLRCVTLATKD+LALE+WT LE+A +S EGYL GASIFRASQ GDI RVKELI RGV VN TN YGC LHYAVKHA +CA VVARG + D +K+ AQEALRV+VFL+S GADA+AVN++G+TPLD+ RLTSGFPK+R + +SILDSSKY++ GG I+I P + LP V+E+ G+ AP P+ T RG + FSPSRRN RAKK+ E+A SR P+ + S G C SG R VAT LPRGDHE A+GG H LAA R SR + G V FK+ RM R+SA+L SG R +RP++C +++S G T A +Q H RH GE+ + P A RR+E SMPD E RRQI EWLR+SAGT AVPP GG LVETS++VAT RS+VY+AL+AIKG RGELISAEKLR +LCR GQPL P EMDELL E DP TGY+SCS LSKL+ RL PL G+
Sbjct: 7 DGISVNTEDAIDVVARIDFIVASLEKAGVPPDELHHFKQVVSRLPV------ANNAAKDGTAVP-GKEALCKRLGREAILMVSGTAAVGGTLRCVTLATKDSLALERWTNLLEQA--MSQEGYLAGASIFRASQIGDILRVKELISRGVDVNRTNAYGCVALHYAVKHAAECAAVVARGGDTTGVDQSKIHAQEALRVVVFLMSHGADARAVNHLGETPLDLGFRLTSGFPKSRSLLLSILDSSKYQIAGGTIFIVP--ANLPSVKEEATRXXXXXXXXXXXXVARTTGLRGAPPVATAGTAAVXXXXXTTAPKTTTARG-VTFSPSRRNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGR-GGVATPALPRGDHETALGGARHRLAAGHGAR--CSRNDHDGGAHGXXXXXXXXXXXXXXXXXXXXXXGG---VHFKDYRMGRSSAVLVSGXXXXGLKRGRGTTRPASCPMPGGVDEGRGPGTPGSRVTSSAKGAGQXXXXXXXXXXXXXXXXXMXXXSTNNGCRGDGGARVVGTRQRHSGRHSARGEQSER--PCARRRREEGERAPGSMPDSEARRQIWEWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTGYVSCSRLSKLVVRGRLQPLAAGK 693
BLAST of mRNA_H-paniculata_contig9194.16995.1 vs. uniprot
Match: A0A6H5JR91_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR91_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 3.030e-139 Identity = 311/740 (42.03%), Postives = 382/740 (51.62%), Query Frame = 1
Query: 1 DGVSVDTEDATNVLARIDYIISALEKAGVPPVELQHFKKVIEL-----------TRLSEDTEDAND-VADDTTDE----------------------------------------------------SIGNEALCKKLGRNAIVMVSSNTTIGGTLRCVTLATKDNLALEQWTTSLEKARAISPEGYLLGASIFRASQTGDISRVKELIMRGVSVNLTNVYGCNPLHYAVKHATDCAMVVARGEEEPVSDGAKMKAQEALRVLVFLVSRGADAKAVNNMGQTPLDVAARLTSGFPKARKMFISILDSSKYEVRGGAIYIFPGKSQLPLVEEK-----------------------DGMDEAPDPQATVRRGGIDFSPSRRNHRAKKKEEVANSRHPHTVARS----------GPC---SGWTRPS-SVATLPRGDHEIAIGGTNHHLAAEFAPRRGMSREASRYASTEQAIPLATGDVHSPLGGDRQTLR--GRDVEVMFKNTRMARNSAILYSGS-----KRRRPRAPVDSRPSTCSI-----------------SNSKSKHGNSVLVRPNPMRLRTLSRAEVPVYTGGYDTESSNACTENRKQAHRRRHIIDGERGMKMTPTAATRRQEHP----SMPDFEVRRQISEWLRKSAGTIVAVPPIGESRLGGH-LVETSAFVATDGRSEVYKALRAIKGQSRGELISAEKLRGILCRTGQPLKPAEMDELLLEADPGDTG 1830
DG+SV+TEDA +V+ARID+I+++LEKAGVPP EL HFK+V+ T + D D VA+ D+ G EALC++LGR AI+MVS +GGTLRCVTLATKD+LALE+WT LE+A +S EGYL GASIFRASQTGDI RVKELI RGV VN TN YGC LHYAVKHA +CA VVARG + D +K+ QEALRV+VFL+S GADA+AVN++G+TPLD+ +RLT GFPK R + + ILDSSKY++ GG I+I P + LP V+E+ T R G+ FSPSRRN RAKK+ E+A SR P+ + S G C SG R + LPRGDHE A+GG H LAA R + + GG + R G V FK+ RM R+SA+L S S KR R A RP++C + ++S + G +Q H RH E+ + P A RR+E SMPD E RRQI EWLR+SAGT AVPP GG LVETS++VAT RS+VY+AL+AIKG RGELISAEKLR +LCR GQPL P EMDELL E DP TG
Sbjct: 8 DGISVNTEDAIDVVARIDFIVASLEKAGVPPDELHHFKQVVSRLPVANHAAKDGTAVPGDAAGPQDLVAEGVLDKLQRGAQGFATVWKPRWIRVLPGELQVFESATRPEPDTPCLFSLPLSVQQTRIDPGKEALCRRLGREAILMVSGTAAVGGTLRCVTLATKDSLALERWTNLLEQA--MSQEGYLAGASIFRASQTGDILRVKELISRGVDVNRTNAYGCVALHYAVKHAAECAAVVARGGDTTGVDQSKIHVQEALRVVVFLMSHGADARAVNHLGETPLDLGSRLTGGFPKFRSLLLPILDSSKYQIAGGTIFIVP--ANLPSVKEEVTGKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAR--GVTFSPSRRNRRAKKRYEIAKSRLPYVSSASLSSAAPSFGEGRCRSSSGGGRGGVTTPALPRGDHETALGGARHRLAAGHGARCSRNDHDGAHGRGG--------------GGAARECRQAGGASGVHFKDYRMGRSSAVLVSSSGGGGLKRWRGAA----RPASCPVPGGIDEGRGPGTPGSRVASSATGAGQRXXXXXXXXXXXXXXXXXXXXXXXXGCRGDGGVRVVGTRQRHGGRHSAREEQSER--PGARRRREEGERALGSMPDSEARRQIWEWLRESAGTASAVPPAMAHGSGGEILVETSSYVATGRRSDVYRALQAIKGDGRGELISAEKLRAVLCRVGQPLLPNEMDELLQETDPTGTG 721
BLAST of mRNA_H-paniculata_contig9194.16995.1 vs. uniprot
Match: A0A835YHJ9_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHJ9_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.850e-13 Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 463 NVYGCNPLHYAVKHATDCAMVVAR---------GEEEPVSDGAKMKAQEALRVLVFLVSRGADAKAVNNMGQTPLDVAARLTSGFPKARKMFISILDSSKYEVRGGAIYIFPGKSQL 786
N +G LHYA + A + VAR A+ AL+++V+L++RGADA+ + G+T LD+A R T+G+P+A+++ + +LDSSKY+V G A+YI P ++ L
Sbjct: 376 NAHGSTALHYAARRAAQRLVDVARCAGSXXXXXXXXXXXXXXXXXXAEGALQLVVYLMARGADARVADGAGRTALDLATRGTAGYPRAQRLLVGVLDSSKYQVEGDALYIVPDEAAL 492 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9194.16995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9194.16995.1 >prot_H-paniculata_contig9194.16995.1 ID=prot_H-paniculata_contig9194.16995.1|Name=mRNA_H-paniculata_contig9194.16995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=633bp DGVSVDTEDATNVLARIDYIISALEKAGVPPVELQHFKKVIELTRLSEDTback to top mRNA from alignment at H-paniculata_contig9194:1973..5515+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9194.16995.1 ID=mRNA_H-paniculata_contig9194.16995.1|Name=mRNA_H-paniculata_contig9194.16995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3543bp|location=Sequence derived from alignment at H-paniculata_contig9194:1973..5515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9194:1973..5515+ >mRNA_H-paniculata_contig9194.16995.1 ID=mRNA_H-paniculata_contig9194.16995.1|Name=mRNA_H-paniculata_contig9194.16995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3798bp|location=Sequence derived from alignment at H-paniculata_contig9194:1973..5515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |