mRNA_H-paniculata_contig9185.16993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 161 bits (407), Expect = 8.930e-39 Identity = 125/381 (32.81%), Postives = 168/381 (44.09%), Query Frame = 2
Query: 323 SLLDGEIPRELDEFLVFLEGLDEFNTEDNPWGEPPAAVVGDGGNISAVRSYFVDLY-RGKRVVSQSL-KVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAGSEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETAAGGTT------GELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRII 1441
+L +P++L+ L L L F +NPW EPP AVV G ISAV+ YF DL+ G V + + KVVLVG+EG GKT SL QS+ TG PT+GSE+STV +D+ + GV+LR+ DC GQVAY GLLQ+FL+ RAV LLV D G + + +L+ L + WLR+ SFR+PD D+++V KCDL + AA R+E A WL +S +G AV VE SLTSC ++L G W CDWR G + E +P SL++R++
Sbjct: 221 NLAGNALPKQLEALLATLSRLG-FLVHENPWQEPPEAVVSKG--ISAVQEYFTDLFAEGIAPVGRKMIKVVLVGQEGAGKT--------------------------------------------------------------------------------------SLRQSLRTGRPTPTSGSEESTVQIDVEQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLAA---GMGTDAAGRIEGAIGEWLESWSGAGMNAVHVEDGVSLTSCFPPTPNEDGGAAL--GKRKSPDEDSTWACDWREGVSVESQP-SLLHRVM 506
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI) HSP 1 Score: 149 bits (376), Expect = 8.710e-35 Identity = 120/384 (31.25%), Postives = 164/384 (42.71%), Query Frame = 2
Query: 329 LDGEIPRELDEFLVFLE----GLDEFNTEDNPWGEPPAAVVGDGGNISAVRSYFVDLY-RGKRVVSQSLKVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSE-TAAGGTTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
L G++P +L L L+ G+ +DNPW EPPA++V G +++R YF DLY RV S+K++LVG+EG GKT SL QS+ A PT E+STV D+ LEG +R+ DC GQVAY GLLQ+FLT R+V +LV +A G GG E LE L + WLR+ S R+P+ D+ILV KCDL +A + R+E A WLA + G + V +E LTSC + + S G ++GW CDWR R D+ PP L++R++ K
Sbjct: 174 LGGQLPSQLCRLLDVLDRATGGI--LGLDDNPWAEPPASIVSKG--PTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKT--------------------------------------------------------------------------------------SLRQSMKANAAIPTGEWKEESTVFADVEPMQLEGSFVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAEAFGQQRGDDTGGQVKEDCRKLEELRVCDWLRSVSRRVPNNDVILVATKCDLVG---GNAEEFGRRIEQATRTWLASWVHDGMQPVRLEPGVCLTSCCASAVGENGEKS-----TGHNASERGWACDWRDDR-DDMPPPGLVHRLVNK 458
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.110e-34 Identity = 122/380 (32.11%), Postives = 161/380 (42.37%), Query Frame = 2
Query: 335 GEIPRELDEFLVFLEGLDEFNTE--DNPWGEPPAAVVGDGGNISAVRSYFVDLYRGKRVVSQS-LKVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETAAGGTTGE-----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
G +P +L LV L+ L N NPW EPP ++V G ++R YF DLY + +S +KVVLVG+EG GKT SL QS+ A PT E+STV D+ LEG S+R+ DC GQVAY GLLQ+FLT R+V +LV +A + G + E L+ L + WLR+ S R+P D+ILV KCDL S +A + R+E AC WL+ + +G V +E SLTSC G H S+ G KQGW CDWR D+ P SL+ R++ K
Sbjct: 63 GAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKG--PKSIRGYFEDLYAEPCWIKRSSVKVVLVGQEGAGKT--------------------------------------------------------------------------------------SLRQSMKANKATPTGEWKEESTVFADVEPMELEGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVS---GNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFPIGDGEHGESN-----TGSDASKQGWACDWRHVEGDKSSP-SLLYRLVNK 345
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.640e-34 Identity = 122/389 (31.36%), Postives = 163/389 (41.90%), Query Frame = 2
Query: 320 RSLLDGEIPRELDEFLVFLEGLD---EFNTEDNPWGEPPAAVVGDGGNISAVRSYFVDLYRGK-RVVSQSLKVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDAS----KEGNSETAAGGTTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
S+ G PR+L L L+ + + N +DNPW EPP ++V G +R YF DLY RV S+K++LVG+EG GKT SL +S+ A PT E+STV D+ LEG S+R+ DC GQVAY GLLQ+FLT RAV ++V +A + G ET GG E LE L + WLR+ S R+PD D+ILV KCD +A + R+E A WLA + SG + V +E LTSC S + GW CDWR G+ D+ PSL++R++ K
Sbjct: 269 HSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKG--AKNIRGYFEDLYAEPCRVQRSSVKIILVGQEGAGKT--------------------------------------------------------------------------------------SLRKSMKAKEATPTGEWKEESTVFADVERMELEGSSIRVYDCAGQVAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCET--GGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVG---GNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCTTNVCEDGERS-----TRNQAMEGGWTCDWRDGK-DDNPSPSLLHRLVNK 558
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.780e-34 Identity = 124/383 (32.38%), Postives = 162/383 (42.30%), Query Frame = 2
Query: 320 RSLLDGEIPRELDEFLVFLEGLDEFNTEDNPWGEPPAAVVGDGGNISAVRSYFVDLYRGK-RVVSQSLKVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASK-EGNSETAAGGTTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
+ + G IP EL L L+G D + NPW EPP ++V G + ++R YF DLY RV +S+KVVLVG+EG GKT SL QS+ A PT E+STV D+ LEG S+R+ DC GQV Y GLLQ+FLT R+V +LV + E + A G E LE L + WLR+ S R+P D+ILV KCDL +A R+ AC WL+ + +G + V +E LTSC A H SS G K GW CDWR R D+ PSL++R++ K
Sbjct: 532 KRMSGGTIPSELRRLLETLDGADT-DLGGNPWAEPPESIVTKG--MESIRGYFEDLYAEPCRVQRRSVKVVLVGQEGAGKT--------------------------------------------------------------------------------------SLRQSMKANEATPTGEWKEESTVFADVQPMELEGSSVRVYDCAGQVGYTGLLQMFLTPRSVCVLVCNVEAFEQRLGSEANGQVQEDCRKLEELRVCHWLRSISRRVPYSDVILVATKCDLAC---GNAGDMGKRLAHACRLWLSNWVRNGMQPVRLEHGVCLTSCCPAAVSEHGESS-----PGNHYAKGGWGCDWRDHR-DDSSSPSLLHRLVNK 816
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 146 bits (368), Expect = 9.180e-34 Identity = 93/211 (44.08%), Postives = 115/211 (54.50%), Query Frame = 2
Query: 818 SLCQSIMTGWAEPT-AGSEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETAAGGTTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACC--NWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRII 1441
SL +SI TG T G E+STVH+D+ D L+G +R+ DC GQV YYGLLQLFLT RAVYLLVWDA+K E LE L I PWLR +FR+PD +ILVGNKCD R++ +AV ES +W+ R +S+E SL SCA +G +A G + GWPCD T P L +RII
Sbjct: 391 SLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGHPIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGL------NLEDLAIAPWLRHLTFRVPDASVILVGNKCDRVVRTRRTAVAVDVEHESRQWLESWIEIARGHQPRGISLEDGVSLVSCAASG---------VGAVAPSFGRRSGWPCDKST--------PGLFHRII 578
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.800e-33 Identity = 92/216 (42.59%), Postives = 119/216 (55.09%), Query Frame = 2
Query: 818 SLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGN-----SETAAGGTTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
SL QS+ A PT E+STV D+ LEG S+R+ DC GQVAY GLLQ+FLT RAV +LV +A K G S G +LE L + WLR+ S R+P+ D+ILV KCDL +A + +R+E AC WL+ + +G + V +E SLTSC G H SS G K GW CDWR AD PSL++R++ K
Sbjct: 208 SLRQSMKANEATPTGEWKEESTVFADVEAMELEGSSVRVYDCAGQVAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAG---GNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESS-----TGSHELKGGWACDWRD-MADGNPSPSLLHRLVNK 414
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 142 bits (358), Expect = 1.940e-32 Identity = 119/385 (30.91%), Postives = 164/385 (42.60%), Query Frame = 2
Query: 323 SLLDGEIPRELDEFLVFLEGLDE--FNTEDNPWGEPPAAVVGDGGNISAVRSYFVDLYRGK-RVVSQSLKVVLVGREGTGKTRYEQPADIAVLECRQPVGLFFIHS*GAHRHDVCRAIYPSYSKKHNR*NWR*LTNDEFMMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETA--AGGTTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRIIRK 1447
S+ G +P +L L L+ + NPW EPP +VV G ++R YF DLY R+ S+KVVLVG+EG GKT SL QS+ A PT +E+STV ++ L+G S+R+ DC GQVAY GLLQ+FLT R+V +LV +A + G + G E LE L + WLR+ S R+PD D+ILV KCDL +A + SR+E++C WL+ + +G + V +E LTSC H S AG +K GW CDWR D+ PS ++R++ K
Sbjct: 342 SMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKG--PKSIRGYFEDLYAEPCRITRSSVKVVLVGQEGAGKT--------------------------------------------------------------------------------------SLRQSMKANKASPTGKWNEESTVFANVEPMELDGSSVRVYDCAGQVAYTGLLQMFLTPRSVCVLVCNAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVG---GNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFPIRVGEHGERS-----AGNHVWKGGWACDWRNVEDDQ-PSPSFLHRLVNK 629
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI) HSP 1 Score: 136 bits (342), Expect = 2.150e-30 Identity = 82/214 (38.32%), Postives = 119/214 (55.61%), Query Frame = 2
Query: 818 SLCQSIMTGWAEPTAGSEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETAAGGTT------GELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGGRAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRII 1441
SL QS+ TG PT+G E+STV +D+ + GV+LR+ DC GQVAY GLLQ+FL+ RAV LLV D G + + + +L+ L + WLR+ SFR+PD D+++V KCDL + A AA+R+ NW+ +S + AV VE +LTSC + ++L G + W CDW G E +P SL++R++
Sbjct: 263 SLRQSLRTGRPTPTSGPEESTVQIDVEQMDVNGVTLRVYDCAGQVAYTGLLQMFLSPRAVSLLVCDTGAFGQRDGSLTDSDQLKKDLNKLQELRVCDWLRSLSFRIPDSDVVMVATKCDLAA---GMAADAAARMAGGAGNWIESWSDAQMTAVRVEDGVNLTSCFASTPNEDGGAAL--GTRESPEEQSTWACDWSDGMCVESQP-SLLHRVM 470
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE) HSP 1 Score: 132 bits (332), Expect = 2.840e-29 Identity = 90/208 (43.27%), Postives = 110/208 (52.88%), Query Frame = 2
Query: 830 SIMTGWAEPTAG-SEDSTVHMDIHDTTLEGVSLRILDCGGQVAYYGLLQLFLTRRAVYLLVWDASKEGNSETAAGGTTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCNWLARFSSSGG----RAVSVEKVASLTSCARAGWWRHVVSSLFWGLAGIVGYKQGWPCDWRTGRADEGRPPSLINRI 1438
SI TG T G +STVH+D+ D ++G +R+ DC GQV YYGLLQLFLT RAVY+LVWDA+K E LE LGI PWLR +FR+PD +ILVGNKCD R++ + V A+ VE WL R +S+E SL SCA +G VV+ F G GWP D T P L RI
Sbjct: 105 SIKTGRPCMTRGCGVESTVHVDVEDHEVDGHPIRVFDCAGQVVYYGLLQLFLTPRAVYMLVWDAAKASEMEGL------NLEDLGIAPWLRYLTFRVPDASVILVGNKCDHVVRTRRTVV--AADVEHESRQWLESLIEIARGHQPRGISLEDGVSLVSCAASGV--GVVAPSF-------GAGSGWPFDKNT--------PGLYRRI 287 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9185.16993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9185.16993.1 >prot_H-paniculata_contig9185.16993.1 ID=prot_H-paniculata_contig9185.16993.1|Name=mRNA_H-paniculata_contig9185.16993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp MMPYALSRATSIVNDILIDNRFNFSCCIYSLCQSIMTGWAEPTAGSEDSTback to top mRNA from alignment at H-paniculata_contig9185:1258..9212- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9185.16993.1 ID=mRNA_H-paniculata_contig9185.16993.1|Name=mRNA_H-paniculata_contig9185.16993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7955bp|location=Sequence derived from alignment at H-paniculata_contig9185:1258..9212- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9185:1258..9212- >mRNA_H-paniculata_contig9185.16993.1 ID=mRNA_H-paniculata_contig9185.16993.1|Name=mRNA_H-paniculata_contig9185.16993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig9185:1258..9212- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |