mRNA_H-paniculata_contig9184.16992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9184.16992.1
Unique NamemRNA_H-paniculata_contig9184.16992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: D7FP05_ECTSI (GPA1, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.280e-33
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KSV+KW+DF G   DEE GK+YFL+LFLKVNQNP RE+Y HVTCATDTENVNFVFNSCKDVILRSNL++SGFV
Sbjct:  282 KSVEKWADFTGEPRDEEAGKAYFLSLFLKVNQNPEREVYHHVTCATDTENVNFVFNSCKDVILRSNLKDSGFV 354
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BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: A0A6S9GNU7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GNU7_HETAK)

HSP 1 Score: 112 bits (280), Expect = 3.010e-29
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            K+V  ++DFPGGLGD ELG  YFL LFLKVNQNP R IY HVTCATDT+NV  VFN+CKD+ILR NL++SGF+
Sbjct:   95 KAVMHFNDFPGGLGDFELGVQYFLNLFLKVNQNPERVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFM 167
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BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: A0A7S2XUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.350e-28
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            K V  ++DFPGGLGD ELG  YFL LFLKVNQNP R IY HVTCATDT+NV  VFN+CKD+ILR NL++SGF+
Sbjct:  283 KQVSHFNDFPGGLGDFELGVQYFLNLFLKVNQNPDRVIYHHVTCATDTQNVQVVFNACKDIILRGNLKDSGFM 355
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: A0A836CAY4_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.270e-26
Identity = 50/73 (68.49%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KS+D +SDFPGGLGD E G  YF  LFL VN NP R IYS+VTCATDT+NVN VF++CKD+ILR NL++SGF+
Sbjct:  282 KSIDAFSDFPGGLGDAEKGIEYFTGLFLAVNTNPARCIYSYVTCATDTDNVNKVFSACKDIILRGNLKDSGFI 354
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: K3WPM8_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WPM8_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 1.430e-23
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KSV+ + DFPGG+GD ELG  YFL  F+++N+ P +EIY HVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  283 KSVEVFKDFPGGIGDYELGVQYFLGKFMEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIKGSGFM 355
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: H3GA02_PHYRM (Uncharacterized protein n=35 Tax=Oomycota TaxID=4762 RepID=H3GA02_PHYRM)

HSP 1 Score: 101 bits (251), Expect = 2.790e-23
Identity = 42/73 (57.53%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            K+VD + DFPGG+GD +LG  YFL  F+++N+ P +EIY HVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  283 KTVDVFKDFPGGIGDYDLGVQYFLGKFMEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIKGSGFM 355
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: A0A485L3B6_9STRA (Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485L3B6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 7.360e-23
Identity = 42/73 (57.53%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KS++ + DFPGGLGD + G +YFL+ FL++N+ P +EIY HVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  281 KSIEVFKDFPGGLGDFDKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 353
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: T0QTL4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTL4_SAPDV)

HSP 1 Score: 98.6 bits (244), Expect = 2.810e-22
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KSV+ + DF GGLGD E G +YFL+ FL++N+ P +EIY HVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  282 KSVEVFKDFQGGLGDFEKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFM 354
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: A0A1V9YVN3_9STRA (G-protein alpha subunit 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVN3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.070e-22
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KSV+ + DF GGLGD E G +YFL+ FL++N+ P +EIY HVTCATD++NV  VFN+CKD+IL+ N++ SGF+
Sbjct:  282 KSVEVFKDFQGGLGDFEKGVTYFLSKFLEMNRQPEKEIYHHVTCATDSQNVQVVFNACKDIILKQNIRGSGFI 354
[Close]
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Match: F0WI40_9STRA (G protein alpha subunit putative n=3 Tax=Albugo TaxID=65356 RepID=F0WI40_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.080e-20
Identity = 40/73 (54.79%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTENVNFVFNSCKDVILRSNLQESGFV 219
            KSVD +SD+ GGLG+ + G  YFL  FL++N+ P +EI+ HVTCATD++NV  VFN+CK++IL+ N++ SGF+
Sbjct:  283 KSVDVFSDYSGGLGNYDAGVQYFLGKFLEMNRQPQKEIFHHVTCATDSQNVQVVFNACKEIILKQNIKGSGFM 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9184.16992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP05_ECTSI2.280e-3380.82GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A6S9GNU7_HETAK3.010e-2971.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XUR0_9STRA6.350e-2871.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CAY4_9STRA1.270e-2668.49GPA1, alpha subunit of a heterotrimeric G protein ... [more]
K3WPM8_GLOUD1.430e-2358.90Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
H3GA02_PHYRM2.790e-2357.53Uncharacterized protein n=35 Tax=Oomycota TaxID=47... [more]
A0A485L3B6_9STRA7.360e-2357.53Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=... [more]
T0QTL4_SAPDV2.810e-2258.90Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
A0A1V9YVN3_9STRA6.070e-2258.90G-protein alpha subunit 1 n=1 Tax=Thraustotheca cl... [more]
F0WI40_9STRA1.080e-2054.79G protein alpha subunit putative n=3 Tax=Albugo Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9184contigH-paniculata_contig9184:5872..7890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue9e-28
Seed eggNOG ortholog2880.D7FP05
Preferred nameGPA1
KEGG koko:K04534,ko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
Ec32 ortholog descriptionGPA1, alpha subunit of a heterotrimeric G protein
Ec32 orthologEc-05_001890.1
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons2
Model size337
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9184.16992.1prot_H-paniculata_contig9184.16992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9184 5987..7890 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.6628592-UTR-H-paniculata_contig9184:5871..59861622931143.6628592-UTR-H-paniculata_contig9184:5871..5986Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9184 5872..5986 -
1691481610.4498107-UTR-H-paniculata_contig9184:5871..59861691481610.4498107-UTR-H-paniculata_contig9184:5871..5986Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9184 5872..5986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.6917946-CDS-H-paniculata_contig9184:5986..61211622931143.6917946-CDS-H-paniculata_contig9184:5986..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9184 5987..6121 -
1691481610.4642406-CDS-H-paniculata_contig9184:5986..61211691481610.4642406-CDS-H-paniculata_contig9184:5986..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9184 5987..6121 -
1622931143.7110224-CDS-H-paniculata_contig9184:7803..78901622931143.7110224-CDS-H-paniculata_contig9184:7803..7890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9184 7804..7890 -
1691481610.47565-CDS-H-paniculata_contig9184:7803..78901691481610.47565-CDS-H-paniculata_contig9184:7803..7890Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9184 7804..7890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9184.16992.1

>prot_H-paniculata_contig9184.16992.1 ID=prot_H-paniculata_contig9184.16992.1|Name=mRNA_H-paniculata_contig9184.16992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
KSVDKWSDFPGGLGDEELGKSYFLALFLKVNQNPGREIYSHVTCATDTEN
VNFVFNSCKDVILRSNLQESGFV*
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mRNA from alignment at H-paniculata_contig9184:5872..7890-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9184.16992.1 ID=mRNA_H-paniculata_contig9184.16992.1|Name=mRNA_H-paniculata_contig9184.16992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2019bp|location=Sequence derived from alignment at H-paniculata_contig9184:5872..7890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGCGTGGACAAGTGGTCGGATTTCCCAGGTGGGCTCGGCGATGAAGA
GCTGGGCAAAAGCTACTTCCTTGCACTTTTTCTCAAGGTATGGTCTGTGT
GTGTGTTTGTGTGTGTACCCTACTAGTGAATACCAGGGGTCCCCTCGGTA
CAATGACCTAAATATAAGAATATTTAGAAAACGGCATATAGCAAGAGTAA
CCTCCAGTAAAATAACGTCTTCAAAGCACTATGGGAAATTCACACCCAAT
GGGAAACATGTACCGATGATATTTTCCCTAAAGACTAGGTGGTTACCGTG
TTATGGCCACGGTAACCTTTCACGGTAATTATGATTCACTTTGCCGTGGT
ATATTACCGCGCACGGTAATACGCGCATTACACGGTAGTCACTGGGACTT
CAGAAAATGTCCCGCCGCGATTTTTTTGCAGGAGAATGTCTCTTTTGTCG
TGGTATTTTCGAAAGTATGACATTCCTGACGATACTCTTGTTGAGCGCGT
TTCAACGATCCTCCGCCGTGTTCGGTAATTTTACTCAGGGGACCCCGGGT
GAATATCACCTTAGGCTCTTCTTTCGCCACTACCGGTATACCTGTAAAAA
CCGTTTTATCACGTACCCTCCTCGAAGCGTGTTTCACATTCGATTTTATC
GAGAAGAACCAACCCTCAAACTGTCAAAAAGCGCGATTATCGACAAATAT
TGAGATTTTCCCAACGACATAGCTTTTCGGTGTGACTAGTTAGTGCTGCA
GTTTTTGAGAAAATCTGGCCTGAAAAACGCTTCGAAGCGGAGTGTGTGTA
TTCAAACAGTTTTACGGTATACTAGGTCTGGGGCCAATTGAGGCTTGTTC
ATGACGGCCTGTAGAAAAGGTCCATGCTTGATTTTGACTCTTCGTTATTG
CTATTGTCGAAATTGCGTGCGGGCAACGCTGCGAGCATTACTCTCATCTC
TCGGACCCTAACCTTAGCCCACACCCGTCATACTTAGCCCGTTGATGGTC
CAATCGGGCCCCGGTAGCGAGTCTGAAATCGCTCAAACGCTGCGCCGCTG
CGCGGCGTGGCGACACTCCTAGAGTCAGGTTCGGTCAGGTTGGTGGAGGG
GTCGAGCAGTATGTCGCAGTAAAACTAAGTACTCCAAAGGACACATGGAC
TTATTCGACAGGCGATGCTGAACACCACTGGGCCAGTAGGGCAGTGGGGT
AATGGCTCAGACCCCCGCCATTTGGTCGTATTGAAAAAAGCATACCCCTA
GAGCAGATCCCAAACATTTTTCTAGGCATGAGGTCCCTGAAGGGGGGTTG
AGCAGTGGAGATATTTCACATGCTTGAGATTGTTTGCCCTTTTTTTTTTT
GGCACATTTCGTGATTCAAACAAGAGAACGAATCGGGCCTTATATTTGCA
TCATTTGGTCCTTCCCGTCTGTTCGACCATATCAATAAATAAGCTTCCCA
ATCTTGAATACAATCATTAGTAACTAACTACTCTACTACATGTTAAATGT
TGTCCAAGATTCCCCTTACCCCAAAGCTTTGCCCTTTCATCGAGAGTGCG
TGGTTTTTGGCATAGCAGCTGCGGCAAGCACCGTGAGTATCCCTCCCCCC
TCCCCCGTAAGAGCGAATAGCCACCGGAGATCAGTTTCACAGGGAAAAAG
CTCCGCCCTTCCGAGGACGTGTCGTCAGCGGTCTAACAACGGCGTCTTGC
AAAACAGGACTGTGCCCCCATCCCCAGTCTGCCGTGCACCCCATGATCTC
TCGTCCCTGCACTACATAGGTAAATCAGAACCCGGGGCGAGAGATCTACT
CCCATGTCACTTGCGCGACCGACACAGAGAACGTAAACTTCGTGTTCAAC
TCGTGCAAGGACGTGATCCTGAGAAGCAATCTTCAAGAGTCAGGGTTCGT
CTGAAGAAGACAATGAACAATGATCGGCCCGTTCTGTCGTCCTGCATGAC
ATGGATGCATTGTCCTGCCGCGGCCTTGAGCTCTGAATTCGGATTTAATG
GGCGCTCCGAATGACAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9184:5872..7890-

>mRNA_H-paniculata_contig9184.16992.1 ID=mRNA_H-paniculata_contig9184.16992.1|Name=mRNA_H-paniculata_contig9184.16992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig9184:5872..7890- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAGCGTGGACAAGTGGTCGGATTTCCCAGGTGGGCTCGGCGATGAAGA
GCTGGGCAAAAGCTACTTCCTTGCACTTTTTCTCAAGAAAAGCGTGGACA
AGTGGTCGGATTTCCCAGGTGGGCTCGGCGATGAAGAGCTGGGCAAAAGC
TACTTCCTTGCACTTTTTCTCAAGGTAAATCAGAACCCGGGGCGAGAGAT
CTACTCCCATGTCACTTGCGCGACCGACACAGAGAACGTAAACTTCGTGT
TCAACTCGTGCAAGGACGTGATCCTGAGAAGCAATCTTCAAGAGTCAGGG
TTCGTCTGAGTAAATCAGAACCCGGGGCGAGAGATCTACTCCCATGTCAC
TTGCGCGACCGACACAGAGAACGTAAACTTCGTGTTCAACTCGTGCAAGG
ACGTGATCCTGAGAAGCAATCTTCAAGAGTCAGGGTTCGTCTGA
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