mRNA_H-paniculata_contig9177.16985.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9177.16985.1
Unique NamemRNA_H-paniculata_contig9177.16985.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: D7FM69_ECTSI (Ribosomal_S10 domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FM69_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 9.610e-69
Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 1 
Query:  205 SYVKGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADATF 561
            +YVKGKGLGQEEA+VHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA F
Sbjct:    3 AYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADAAF 121
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A397FH44_9STRA (Ribosomal_S10 domain-containing protein n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A397FH44_9STRA)

HSP 1 Score: 197 bits (500), Expect = 5.150e-56
Identity = 100/142 (70.42%), Postives = 115/142 (80.99%), Query Frame = 1 
Query:  130 GYCRSVTSAPRPTKAELSI*AVAIMSYVKGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            G      ++P P   ++S+         K  G   EE+++HRIRITLTS+NVKNLEKVCADLKKGAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTIAD+
Sbjct:    3 GLSHVTAASPPPRSTKMSV-----QKPTKPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIADS 139
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A835YYK1_9STRA (Ribosomal protein S10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYK1_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.270e-55
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:  205 SYVKGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            S+ K K +  EE++VHRIRITLTS+NVKNLEKVCADLK GAV+ +LKVSGPVRLPT+KLKIVTRKSPCG GTNT+DRFEMRIHKRI+DLHSPSEIVK+ITSISIEPGVEVEVTI D+
Sbjct:    3 SFTKTKDIASEESRVHRIRITLTSRNVKNLEKVCADLKSGAVKHQLKVSGPVRLPTRKLKIVTRKSPCGNGTNTFDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIKDS 119
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A329RI77_9STRA (Ribosomal_S10 domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A329RI77_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.250e-54
Identity = 97/121 (80.17%), Postives = 111/121 (91.74%), Query Frame = 1 
Query:  196 AIMSYV-KGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            +IMS V K K +  EE ++HRIRITLTS+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct:   45 SIMSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 165
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A7SES9_NEMVE (40S ribosomal protein S20 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SES9_NEMVE)

HSP 1 Score: 191 bits (484), Expect = 5.140e-54
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:  202 MSYVKGKG-LGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            MSY K KG + +EEAQ+HRIRITLTS+NVK+LEKVCADL +GA EKKLKV GPVR+PTK L+I TRK+PCGEG+ TWDR+EMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIADA
Sbjct:    1 MSYAKEKGAVPEEEAQIHRIRITLTSRNVKSLEKVCADLIRGAKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: G4YYZ2_PHYSP (Ribosomal_S10 domain-containing protein n=7 Tax=Oomycota TaxID=4762 RepID=G4YYZ2_PHYSP)

HSP 1 Score: 189 bits (481), Expect = 1.430e-53
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:  202 MSYV-KGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            MS V K K +  EE ++HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: H3GAS8_PHYRM (Ribosomal_S10 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=H3GAS8_PHYRM)

HSP 1 Score: 189 bits (481), Expect = 1.430e-53
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:  202 MSYV-KGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            MS V K K +  EE ++HRIRITL+S+NVKNLEKVCADLK+GAV+K LKVSGPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct:    1 MSLVNKQKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 119
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A421F2P5_9STRA (Ribosomal_S10 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F2P5_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.450e-53
Identity = 93/121 (76.86%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:  193 VAIMSYVKGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            ++ MS  K K +  EE ++HRIRITL+S+NVKNLEKVCADLK+GAV+K LKV+GPVRLPTK L++ TRKSPCGEGTNTWDRFEMRIHKRI+DLH+PS+IVK+ITSISIEPGVEVEVTIAD+
Sbjct:   30 LSTMSLNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVDKNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIADS 150
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A6U5GMR1_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5GMR1_9STRA)

HSP 1 Score: 188 bits (478), Expect = 4.220e-53
Identity = 91/110 (82.73%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:  223 GLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 552
            G+ + +A+VHRIRITLTS+NVKNLEKVCADLK+GA++KKLKVSGPVRLPTKKL I TRK+P GEGTNTWDRFEMRIHKR++DLHSP+EIVK+ITSISIEPGVEVEVT+AD
Sbjct:   13 GIVEADAKVHRIRITLTSRNVKNLEKVCADLKRGALDKKLKVSGPVRLPTKKLTITTRKAPSGEGTNTWDRFEMRIHKRLIDLHSPAEIVKQITSISIEPGVEVEVTVAD 122
[Close]
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Match: A0A6P8HBZ6_ACTTE (40S ribosomal protein S20 n=6 Tax=Hexacorallia TaxID=6102 RepID=A0A6P8HBZ6_ACTTE)

HSP 1 Score: 186 bits (473), Expect = 1.980e-52
Identity = 94/118 (79.66%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:  205 SYVKGKG-LGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIADA 555
            S  K KG + +EE Q+HRIRITLTS+NVK+LEKVCADL +GA EKKLKV GPVR+PTK LKI TRK+PCGEG+ TWDRFEMRIHKR++DLHSPSEIVK+ITSISIEPGVEVEVTIADA
Sbjct:    3 SLYKEKGAVPEEEVQIHRIRITLTSRNVKSLEKVCADLIRGAKEKKLKVKGPVRMPTKYLKITTRKTPCGEGSKTWDRFEMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9177.16985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM69_ECTSI9.610e-6997.48Ribosomal_S10 domain-containing protein n=3 Tax=Eu... [more]
A0A397FH44_9STRA5.150e-5670.42Ribosomal_S10 domain-containing protein n=8 Tax=Sa... [more]
A0A835YYK1_9STRA5.270e-5582.05Ribosomal protein S10 domain-containing protein n=... [more]
A0A329RI77_9STRA3.250e-5480.17Ribosomal_S10 domain-containing protein n=11 Tax=P... [more]
A7SES9_NEMVE5.140e-5479.8340S ribosomal protein S20 n=2 Tax=Nematostella vec... [more]
G4YYZ2_PHYSP1.430e-5379.83Ribosomal_S10 domain-containing protein n=7 Tax=Oo... [more]
H3GAS8_PHYRM1.430e-5379.83Ribosomal_S10 domain-containing protein n=9 Tax=Eu... [more]
A0A421F2P5_9STRA1.450e-5376.86Ribosomal_S10 domain-containing protein n=3 Tax=Ph... [more]
A0A6U5GMR1_9STRA4.220e-5382.73Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A6P8HBZ6_ACTTE1.980e-5279.6640S ribosomal protein S20 n=6 Tax=Hexacorallia Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9177contigH-paniculata_contig9177:3546..7574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.9
Seed ortholog evalue5.2e-57
Seed eggNOG ortholog2880.D7FM69
KEGG koko:K02969
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0051@1,KOG0900@2759
Ec32 ortholog descriptionRibosomal protein S10, eukaryotic/archaeal
Ec32 orthologEc-16_004860.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons4
Model size2140
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9177.16985.1prot_H-paniculata_contig9177.16985.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9177 5122..6550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.9153378-UTR-H-paniculata_contig9177:3545..51211622931142.9153378-UTR-H-paniculata_contig9177:3545..5121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 3546..5121 -
1691481610.1291702-UTR-H-paniculata_contig9177:3545..51211691481610.1291702-UTR-H-paniculata_contig9177:3545..5121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 3546..5121 -
1622931143.0218408-UTR-H-paniculata_contig9177:6550..66211622931143.0218408-UTR-H-paniculata_contig9177:6550..6621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 6551..6621 -
1691481610.1691718-UTR-H-paniculata_contig9177:6550..66211691481610.1691718-UTR-H-paniculata_contig9177:6550..6621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 6551..6621 -
1622931143.0362163-UTR-H-paniculata_contig9177:6731..68281622931143.0362163-UTR-H-paniculata_contig9177:6731..6828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 6732..6828 -
1691481610.1813872-UTR-H-paniculata_contig9177:6731..68281691481610.1813872-UTR-H-paniculata_contig9177:6731..6828Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 6732..6828 -
1622931143.0566316-UTR-H-paniculata_contig9177:7541..75741622931143.0566316-UTR-H-paniculata_contig9177:7541..7574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 7542..7574 -
1691481610.193154-UTR-H-paniculata_contig9177:7541..75741691481610.193154-UTR-H-paniculata_contig9177:7541..7574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9177 7542..7574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.984156-CDS-H-paniculata_contig9177:5121..53841622931142.984156-CDS-H-paniculata_contig9177:5121..5384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9177 5122..5384 -
1691481610.1399734-CDS-H-paniculata_contig9177:5121..53841691481610.1399734-CDS-H-paniculata_contig9177:5121..5384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9177 5122..5384 -
1622931143.0066001-CDS-H-paniculata_contig9177:6450..65501622931143.0066001-CDS-H-paniculata_contig9177:6450..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9177 6451..6550 -
1691481610.1500967-CDS-H-paniculata_contig9177:6450..65501691481610.1500967-CDS-H-paniculata_contig9177:6450..6550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9177 6451..6550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9177.16985.1

>prot_H-paniculata_contig9177.16985.1 ID=prot_H-paniculata_contig9177.16985.1|Name=mRNA_H-paniculata_contig9177.16985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MSYVKGKGLGQEEAQVHRIRITLTSKNVKNLEKVCADLKKGAVEKKLKVS
GPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEI
TSISIEPGVEVEVTIADATF*
back to top

mRNA from alignment at H-paniculata_contig9177:3546..7574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9177.16985.1 ID=mRNA_H-paniculata_contig9177.16985.1|Name=mRNA_H-paniculata_contig9177.16985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4029bp|location=Sequence derived from alignment at H-paniculata_contig9177:3546..7574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCAATCACCCTAGCCACCCAGCCGGATCAGGTAAGCCGCAGCACGAC
CAGCCCAGGAGGCTTACTTCGTGCCTCATTTGGAGAAAACGTTGGTGTGT
TGACCTTTAGGAAGTGCTTCATATTGTTCGGCACTGTACGTTGTGAGGTT
TGTTTGTTGCGTTTCCTGTCTGTGTAATCGCTGTTATGTCAGTGCTATGA
GCAGATATACTGACCATTCTCTCTGAGTGACCCTACACATCTGCAGTATT
ACATGGCCAGTCTGTAGGGTTTTTCCTTGCGAGCTTGATGCCGTACTGAT
GTACGGTTATCGTAATCGCGTGTACGGTCGTTACGTTTAGGGTTGCAGGT
TGGGAATGCATCGTCGCTCCTGCGATCATTTCGTGATGACCTACTTCAGG
ATGATTTGAGTGTTTGTGGACCACGCTTGGAATTGAGCTGTGCTGTCGGG
AACGCGTATGGCTTGTGTTCGTCTGTGATCTAGGGCAACTAGTCTTACTG
TGTATTGATATTCTCCAGCAGTTACCACGTGCTTCCGATTTGTAGGATTA
TGCCCTCGTGCATATCCCGTTGCTGTTATGTCATAAACCTAAACGTCATA
TCATGACTGCCTCATGAACTTCACATCAAATTGATTGGGGACATTCGCAA
CAGAAAGTTGCTGCCCCCAGCAAAACAGCAGCATGATGCGAAACGGGAAA
AACCGTTTTTTTCTTTTTACACAAATGTTATTATCTGTTTTTGAAGACGC
AGGAAAGAGGGCCCGTGATGCGCTTGCTGCATCTGATCGTGTCCATCGCA
GATCGTCGGTCTTGCGCTTTGCCCGAAGCGTGCTCTATCTTCGGTTAGTT
CTGTTGCGAAAACTTTGACTTGTCCTCTGCCGCAGGAGCCGTCTCTATAT
TGTTAATGTTACAGTATCTTTGCCCCTCGTTCTCTTCGATCCCGTTACGC
AAGGTTACTGCAGAAGTGTTACTTCTGCACCTCGTCCGACAAAGGCCGAA
CTCTCGATCTAAGCAGTAGCGATCATGTCTTACGTGAAGGGCAAGGGCCT
CGGTCAGGAGGAGGCGCAGGTGCACCGCATCCGTATCACCCTCACATCGA
AGAACGTGAAGAACTTGGAAAAGGGTGAGCTTTTATTTTGAAACATTGGC
ACGGTTAGTTCAATCGTTTAGTCGATCCACTTACACGCCCCATGCGTAGA
CACATTATGGCTTGCTGTCGTTTTATGCCGATGAAATTGGAGATACTCGA
GTGTAGAAGAAACCGGATCGAAATCATAGATCACCTTTAATGTCAGGGTG
CTGAATTCGGGTAGGCCTCCATGCTCGTACATGATCCTTATTCGAAGAAA
CGGAAATTAATTTGCCCGCGATGTATTGATGCGGTGGCGATGGTGCCAGT
CACTCACTTGAGCAACTAGTGTAACACGAAGTGAACTTGTACTGTACTGT
TACACTTTTCTGTTGTCGCAGACAGCATGTGGGGAAAAAACATTTCGAGC
ACGAATACGGTAGATAAACCCACCTCGCCCCCATCCCCTCTCCCAGCACG
CACACACATTTCTTACCGCTACTGCTTGATGGATTTTCGAGAAATGAGCA
GAAAATCAACCACACGTGCGCAACAAAATTTGGTTTTGATTCTCCATTAA
CGGGAAATAATGGATATAAGAGAGAAGTTCGGAACACAGCTGGGAAACCT
GCAATTTGAAAATTAAATTCGTGCGCAACGTCTTTGTTTGCGGATCGCAA
TATGTGCGTGCTAAATGCTGCATTAGGTACAGCTTGGAGCTTGTGAAACC
CCAAGATCTTGAAAATATGAGTATTTAATATTTACATGTATACATGGTTA
CACTTCCATATCCAAAATGCTAATACCCAATGGAGGTAGTCATGATCTCC
TGTAAGAATCTTCTCTCACAAGGGAATTATTTGCAGGCACTATCAAAAGT
TGATGGTTCATGCAGAAGCAAAAACTGACTTTGTAGTACGGAACCAAAAT
CAGCTAGTTTTATCATTATTACGATGGTTTTTGCGGCGGCCTTGTATTTC
GTGGCGCAAGACTACTGGTAAAAGACGTATTGTGAACCCTTGAAATTCAA
GTACGGTATATGTTGCTGAGCTATGGATAGAGTTCCTTTACCGCTCATGA
ATTTGATAGTTTTTTTGCTTCGCGTTTGAATACTTTGTAGTGTGCGCAGA
CCTGAAGAAGGGCGCCGTGGAGAAGAAGCTCAAGGTGTCCGGCCCGGTCC
GTCTTCCCACCAAAAAGCTCAAGATCGTCACCCGCAAGTCGCCATGCGGG
GAGGGAACCAACACCTGGGATCGGTTTGAGATGCGCATCCACAAGCGCAT
CCTCGACCTGCACTCTCCCTCTGAGATCGTGAAGGAGATCACTTCCATCT
CTATCGAGCCCGGAGTAGAGGTCGAGGTGACCATCGCCGATGCAACCTTC
TAAACTCGTCCATGTCGACGGAGATTGCTCCTGCATAGAGCTACTTTGCT
GATGATTAGTGTCGGGGAGTAGGTGGGCGGCAGGCGGGATGGCTTGTTCC
TAGTTCATCTTGCCACCCATCCTATGGACGGGGTTGGCGCGGCAGTTCGT
AGAGGCTCTTGTGATGCTGTTGGCTACTGGCATCTGGCGAGGGGCTGAAA
GAGCGTTGAAGAAAGCAATATAAAAGAGGGTGATGAAGAAAGCAATATAA
AGCCACAAAAATAATATTGTTTACTGGAGGTAAATACTTCTTTCGTGAGC
ACGGAAAACGGGAACCCTCGTTTCTTGTGCTAGGCGATCTTTGATTTAGT
CATTGTGCTCCATCCTTGCCGACCGTCGATGAACATATATATGAGGGAAC
AGAGGTTCATATGAATTCTCGTCTCGATCTGATGGATGCAGAACCAACCC
CTCGGATTTAACGCTATTTTTGCCTCTACAAGAGTACAAGCAGTGTGGCC
GCCACAGTGTATGATTATATTCGGCCTCTGAAACGCTCTGAACAGATATT
GATGATATGAGTAACACGACAATCGGAGTGCGGGAGTTGAACCTCACGAG
GCTGCATGTACGAAAGCTCCGGCCTATACGGGGAGGAACATATGACAAAC
TCCTCTGGTGCTAGGGTGGAGGGGTTGAAACGAACATTTTTACCCTTCCG
CAAAACATGCAATTGATATCGTGTATGGGACTTCGTACTTGATACTTGGT
CGTGAGATTAAGCGCCTTCCCTCACAACGCTTACAAGGTATGTAAACAGA
GGTTGCATATGCAGGGGTGGAAAAGGAAAATCACGTATATATACATTCAA
TCACATTTCGCATTTCGAGTTGGGCATTGGAGAAAAAATCGGATGGAGAA
ATAGAATAATCGTATCTAACATCCTAAATGTGGATATATCTCAATATTAT
TGCAATGTACCAAATAATATGTGAAGTGTACATTCATGTACTAAATGCCC
CACATAACCTACTTGTCTACTCGTGTGAGGGCTGGTACACATCTATGGTG
TAAGACCTGTCAGTGAGCAGCAGAGAAAACCAAGAACAGCCTATCCTTCT
ACTTGAAGATCGATTGATAATTGAGGATGAAAACAGCATTTTCGCACCAT
GAAAATTGTCAAAACTATTCTTGAGTTTGAATTATTAAAAACTTCTTAGC
AGCCAATCATCCTAATTGAGAATTGATCTTTTTATTGAGGATAAAATAGC
TTTCGGTTATCGGAAAAGTATTATTGCCGAACCATTCTAAGTGGTCCAAG
GCTGCGCGAAAGCGGATAACGTCAGAATAAATGGGCAATTGTTTTTTCAG
TCGATCCATTCGCTGCCGAGACACGAGCATAATACGAAGAACAATGTAGG
CGGTAACGGCTTTTCTCATTTTTCTTGTTTTCGCGTTATCTTGAGATTGG
CATTAGTCAAGTCCAATCGAAAGTAGGTGCGTTCGACAGCTAATGAGGAG
AAGTATAATCTTCCGCCCTCGGTTTCTTGCGTTTGGCATGTCAACAATAG
TTATATCTCAAATAATTCATCCTCAATTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9177:3546..7574-

>mRNA_H-paniculata_contig9177.16985.1 ID=mRNA_H-paniculata_contig9177.16985.1|Name=mRNA_H-paniculata_contig9177.16985.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig9177:3546..7574- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTACGTGAAGGGCAAGGGCCTCGGTCAGGAGGAGGCGCAGGTGCA
CCGCATCCGTATCACCCTCACATCGAAGAACGTGAAGAACTTGGAAAAGG
ATGTCTTACGTGAAGGGCAAGGGCCTCGGTCAGGAGGAGGCGCAGGTGCA
CCGCATCCGTATCACCCTCACATCGAAGAACGTGAAGAACTTGGAAAAGG
TGTGCGCAGACCTGAAGAAGGGCGCCGTGGAGAAGAAGCTCAAGGTGTCC
GGCCCGGTCCGTCTTCCCACCAAAAAGCTCAAGATCGTCACCCGCAAGTC
GCCATGCGGGGAGGGAACCAACACCTGGGATCGGTTTGAGATGCGCATCC
ACAAGCGCATCCTCGACCTGCACTCTCCCTCTGAGATCGTGAAGGAGATC
ACTTCCATCTCTATCGAGCCCGGAGTAGAGGTCGAGGTGACCATCGCCGA
TGCAACCTTCTAATGTGCGCAGACCTGAAGAAGGGCGCCGTGGAGAAGAA
GCTCAAGGTGTCCGGCCCGGTCCGTCTTCCCACCAAAAAGCTCAAGATCG
TCACCCGCAAGTCGCCATGCGGGGAGGGAACCAACACCTGGGATCGGTTT
GAGATGCGCATCCACAAGCGCATCCTCGACCTGCACTCTCCCTCTGAGAT
CGTGAAGGAGATCACTTCCATCTCTATCGAGCCCGGAGTAGAGGTCGAGG
TGACCATCGCCGATGCAACCTTCTAA
back to top