mRNA_H-paniculata_contig9174.16984.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9174.16984.1
Unique NamemRNA_H-paniculata_contig9174.16984.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58)

HSP 1 Score: 63.2 bits (152), Expect = 2.120e-9
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGEL-GGKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRGSEASE 282
            +E+++ K +LR+AG+V+RM DER+PK +  GEL  GKR + +P ++++ C+ +N+  F  P+  WE  +K     W  +++       RG+E SE
Sbjct:  267 IESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAK-SRTEWRQLLK-------RGAEVSE 353
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395)

HSP 1 Score: 63.2 bits (152), Expect = 2.140e-9
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGEL-GGKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRGSEASE 282
            +E+++ K +LR+AG+V+RM DER+PK +  GEL  GKR + +P ++++ C+ +N+  F  P+  WE  +K     W  +++       RG+E SE
Sbjct:  320 IESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAK-SRTEWRQLLK-------RGAEVSE 406
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF)

HSP 1 Score: 63.2 bits (152), Expect = 2.180e-9
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGEL-GGKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRGSEASE 282
            +E+++ K +LR+AG+V+RM DER+PK +  GEL  GKR + +P ++++ C+ +N+  F  P+  WE  +K     W  +++       RG+E SE
Sbjct:  445 IESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKPKKRFKDCIKNNLKAFKIPVENWETLAK-SRTEWRQLLK-------RGAEVSE 531
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT)

HSP 1 Score: 62.0 bits (149), Expect = 5.270e-9
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELG-GKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRG 267
            VE+++KKR+L++AG+++RM DERLPKI++ GEL  G R  G+P ++++  + D +     P+  WE +++   A W   +  G   +  G
Sbjct:  288 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAE-DRASWRTAIHTGVQSFEAG 376
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT)

HSP 1 Score: 62.0 bits (149), Expect = 5.590e-9
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELG-GKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRG 267
            VE+++KKR+L++AG+++RM DERLPKI++ GEL  G R  G+P ++++  + D +     P+  WE +++   A W   +  G   +  G
Sbjct:  574 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAE-DRASWRTAIHTGVQSFEAG 662
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-8
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELG-GKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEG 246
            VE+++KKR+L++AG+++RM DERLPKI++ GEL  G R  G+P ++++  + D +     P+  WE +++   A W   +  G
Sbjct:  221 VESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAE-DRASWRTAIHTG 302
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A6H5L144_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L144_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-6
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELGGKRG-RGQPARQWRQCVVDNINDFGTPITI----WEKQSKVGAAHWYGIVEEGTARYIR 264
            +E  V+KRRL FAG V+RMGD RLPK M+ G + G  G RG     W   + +++  FG         W++ +K   A WY  +E+G A ++R
Sbjct:  787 IEATVRKRRLCFAGFVMRMGDNRLPKRMLLGAMAGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEA-WYDKIEDGAAWFMR 878
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A8J9Z756_BRALA (Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z756_BRALA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELG-GKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEG 246
            V T+++K R R+AG+V RM D+R+PK+++ GEL  GKR  G+P  +++  +   +     P+  WE  +      W G V +G
Sbjct:  103 VHTLLEKARARWAGHVRRMDDQRIPKVLLYGELAVGKRPLGRPKLRYKDNLKATLKSLSIPMDSWEVIA-ADRPQWRGAVHQG 184
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: UPI001CF2EAF5 (zinc finger protein 655-like n=2 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF2EAF5)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-6
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   31 RFAGNVLRMGDERLPKIMMDGEL-GGKRGRGQPARQWRQCVVDNINDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRGSEASE 282
            R+AG+V+RM DER+PK +  GEL  GKR + +P ++++ C+ +++  F  P+  WE  +K     W  +++       RG+E SE
Sbjct:    6 RWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNSLKAFKIPVENWETLAK-SRTEWRQLLK-------RGAEVSE 82
[Close]
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.030e-6
Identity = 36/93 (38.71%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:    1 VETMVKKRRLRFAGNVLRMGDERLPKIMMDGELGGKRG-RGQPARQWRQCVVDNINDFGTPITI----WEKQSKVGAAHWYGIVEEGTARYIR 264
            +E  V+KRRL FAG V+RM D RLPK M+ G +GG  G RG     W  C+ +++  F          W++ +K     WY  VE+G A  +R
Sbjct:  142 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMGGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEV-WYNKVEDGVACLMR 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9174.16984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CF59A582.120e-935.79uncharacterized protein LOC122965242 n=1 Tax=Acrop... [more]
UPI001CF213952.140e-935.79uncharacterized protein LOC122952729 n=1 Tax=Acrop... [more]
UPI00077B22FF2.180e-935.79uncharacterized protein LOC107355912 n=1 Tax=Acrop... [more]
A0A6S7K883_PARCT5.270e-935.56RNA-directed DNA polymerase from mobile element jo... [more]
A0A7D9M5G6_PARCT5.590e-935.56RNA-directed DNA polymerase from mobile element jo... [more]
A0A6S7JKI9_PARCT1.100e-837.35Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6H5L144_9PHAE1.130e-638.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J9Z756_BRALA1.320e-634.94Hypp8133 protein n=1 Tax=Branchiostoma lanceolatum... [more]
UPI001CF2EAF52.100e-635.29zinc finger protein 655-like n=2 Tax=Acropora mill... [more]
A0A6H5JCQ1_9PHAE3.030e-638.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9174contigH-paniculata_contig9174:8237..8551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.8480837-UTR-H-paniculata_contig9174:8236..82451622931142.8480837-UTR-H-paniculata_contig9174:8236..8245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9174 8237..8245 +
1691481610.1081834-UTR-H-paniculata_contig9174:8236..82451691481610.1081834-UTR-H-paniculata_contig9174:8236..8245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9174 8237..8245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.8694713-CDS-H-paniculata_contig9174:8245..85511622931142.8694713-CDS-H-paniculata_contig9174:8245..8551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9174 8246..8551 +
1691481610.1175451-CDS-H-paniculata_contig9174:8245..85511691481610.1175451-CDS-H-paniculata_contig9174:8245..8551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9174 8246..8551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9174.16984.1prot_H-paniculata_contig9174.16984.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9174 8246..8551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9174.16984.1

>prot_H-paniculata_contig9174.16984.1 ID=prot_H-paniculata_contig9174.16984.1|Name=mRNA_H-paniculata_contig9174.16984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MVKKRRLRFAGNVLRMGDERLPKIMMDGELGGKRGRGQPARQWRQCVVDN
INDFGTPITIWEKQSKVGAAHWYGIVEEGTARYIRGSEASEVVKTHARHA
RE
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mRNA from alignment at H-paniculata_contig9174:8237..8551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9174.16984.1 ID=mRNA_H-paniculata_contig9174.16984.1|Name=mRNA_H-paniculata_contig9174.16984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at H-paniculata_contig9174:8237..8551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGAAACGATGGTGAAGAAGCGACGACTTCGGTTCGCGGGGAACGTATT
GCGCATGGGGGACGAACGCCTGCCGAAGATCATGATGGACGGGGAACTTG
GAGGGAAAAGAGGCAGGGGCCAGCCTGCGAGGCAATGGCGACAATGTGTC
GTCGACAACATCAACGACTTTGGCACCCCGATTACAATATGGGAGAAGCA
ATCAAAAGTTGGTGCCGCCCACTGGTACGGTATTGTGGAGGAAGGAACCG
CTCGTTATATACGTGGATCGGAAGCAAGCGAGGTAGTAAAGACTCACGCC
CGGCACGCGCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9174:8237..8551+

>mRNA_H-paniculata_contig9174.16984.1 ID=mRNA_H-paniculata_contig9174.16984.1|Name=mRNA_H-paniculata_contig9174.16984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig9174:8237..8551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGAAGCGACGACTTCGGTTCGCGGGGAACGTATTGCGCATGGG
GGACGAACGCCTGCCGAAGATCATGATGGACGGGGAACTTGGAGGGAAAA
GAGGCAGGGGCCAGCCTGCGAGGCAATGGCGACAATGTGTCGTCGACAAC
ATCAACGACTTTGGCACCCCGATTACAATATGGGAGAAGCAATCAAAAGT
TGGTGCCGCCCACTGGTACGGTATTGTGGAGGAAGGAACCGCTCGTTATA
TACGTGGATCGGAAGCAAGCGAGGTAGTAAAGACTCACGCCCGGCACGCG
CGAGAGATGGTGAAGAAGCGACGACTTCGGTTCGCGGGGAACGTATTGCG
CATGGGGGACGAACGCCTGCCGAAGATCATGATGGACGGGGAACTTGGAG
GGAAAAGAGGCAGGGGCCAGCCTGCGAGGCAATGGCGACAATGTGTCGTC
GACAACATCAACGACTTTGGCACCCCGATTACAATATGGGAGAAGCAATC
AAAAGTTGGTGCCGCCCACTGGTACGGTATTGTGGAGGAAGGAACCGCTC
GTTATATACGTGGATCGGAAGCAAGCGAGGTAGTAAAGACTCACGCCCGG
CACGCGCGAGAG
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