mRNA_H-paniculata_contig9164.16977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9164.16977.1
Unique NamemRNA_H-paniculata_contig9164.16977.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9164.16977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9164contigH-paniculata_contig9164:2959..3407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.6389174-UTR-H-paniculata_contig9164:2958..29781622931141.6389174-UTR-H-paniculata_contig9164:2958..2978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9164 2959..2978 +
1691481609.505432-UTR-H-paniculata_contig9164:2958..29781691481609.505432-UTR-H-paniculata_contig9164:2958..2978Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9164 2959..2978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.6623316-CDS-H-paniculata_contig9164:2978..34071622931141.6623316-CDS-H-paniculata_contig9164:2978..3407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9164 2979..3407 +
1691481609.5155208-CDS-H-paniculata_contig9164:2978..34071691481609.5155208-CDS-H-paniculata_contig9164:2978..3407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9164 2979..3407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9164.16977.1prot_H-paniculata_contig9164.16977.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9164 2979..3407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9164.16977.1

>prot_H-paniculata_contig9164.16977.1 ID=prot_H-paniculata_contig9164.16977.1|Name=mRNA_H-paniculata_contig9164.16977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MDHFEEESKGDFFSPSGLDNWKNPSALFGTWIILIGRTRHKTRAASSGHP
KHGSNYVIVRGVLHCEVQQVNPTTAHTHTHPTVMVPVTDKAYESSDDNDE
VLLAVCQATLNQINFMALHCSPRRHTAYPKFGTPQESQFPIRS
back to top

mRNA from alignment at H-paniculata_contig9164:2959..3407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9164.16977.1 ID=mRNA_H-paniculata_contig9164.16977.1|Name=mRNA_H-paniculata_contig9164.16977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=449bp|location=Sequence derived from alignment at H-paniculata_contig9164:2959..3407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCCTTATGGTGGGGAAATATGGATCATTTCGAAGAAGAATCCAAGGGG
GACTTTTTTTCTCCATCTGGCTTGGATAATTGGAAAAATCCAAGTGCCCT
TTTCGGAACTTGGATTATTTTAATCGGAAGAACACGACACAAGACGAGAG
CGGCATCGTCTGGACACCCAAAACACGGCAGCAACTATGTGATTGTTCGA
GGGGTACTGCACTGTGAGGTACAACAGGTCAATCCCACCACAGCTCACAC
ACACACACACCCTACCGTGATGGTGCCAGTTACCGACAAAGCATACGAGT
CATCCGACGACAACGATGAGGTGCTGCTTGCTGTGTGCCAAGCAACCTTA
AACCAGATCAATTTCATGGCTCTACATTGTTCTCCTCGCAGACATACCGC
CTATCCAAAGTTTGGAACACCTCAAGAATCCCAGTTTCCCATAAGAAGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9164:2959..3407+

>mRNA_H-paniculata_contig9164.16977.1 ID=mRNA_H-paniculata_contig9164.16977.1|Name=mRNA_H-paniculata_contig9164.16977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig9164:2959..3407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCATTTCGAAGAAGAATCCAAGGGGGACTTTTTTTCTCCATCTGG
CTTGGATAATTGGAAAAATCCAAGTGCCCTTTTCGGAACTTGGATTATTT
TAATCGGAAGAACACGACACAAGACGAGAGCGGCATCGTCTGGACACCCA
AAACACGGCAGCAACTATGTGATTGTTCGAGGGGTACTGCACTGTGAGGT
ACAACAGGTCAATCCCACCACAGCTCACACACACACACACCCTACCGTGA
TGGTGCCAGTTACCGACAAAGCATACGAGTCATCCGACGACAACGATGAG
GTGCTGCTTGCTGTGTGCCAAGCAACCTTAAACCAGATCAATTTCATGGC
TCTACATTGTTCTCCTCGCAGACATACCGCCTATCCAAAGTTTGGAACAC
CTCAAGAATCCCAGTTTCCCATAAGAAGTATGGATCATTTCGAAGAAGAA
TCCAAGGGGGACTTTTTTTCTCCATCTGGCTTGGATAATTGGAAAAATCC
AAGTGCCCTTTTCGGAACTTGGATTATTTTAATCGGAAGAACACGACACA
AGACGAGAGCGGCATCGTCTGGACACCCAAAACACGGCAGCAACTATGTG
ATTGTTCGAGGGGTACTGCACTGTGAGGTACAACAGGTCAATCCCACCAC
AGCTCACACACACACACACCCTACCGTGATGGTGCCAGTTACCGACAAAG
CATACGAGTCATCCGACGACAACGATGAGGTGCTGCTTGCTGTGTGCCAA
GCAACCTTAAACCAGATCAATTTCATGGCTCTACATTGTTCTCCTCGCAG
ACATACCGCCTATCCAAAGTTTGGAACACCTCAAGAATCCCAGTTTCCCA
TAAGAAGT
back to top