mRNA_H-paniculata_contig9161.16974.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig9161.16974.1 vs. uniprot
Match: A0A6H5KK87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK87_9PHAE) HSP 1 Score: 383 bits (984), Expect = 3.050e-109 Identity = 316/821 (38.49%), Postives = 413/821 (50.30%), Query Frame = 1
Query: 1486 CSPSNAGRLSGGGTTGEDVDRVDALLLNLSRVMESLLRMVEEWILTGYPGVSGMRGGGVGCRSSSHG-------NVPGEPGILLAELVFGSYERILLDQHNLTARSDSFGSGIAFASCVGVAIDSILAVLDDKAVSTRWTLNGGSFGVARDVCSHS--NRRSSRLATVPRDRDV----GRGYSE-EGRMVEGMEVNAADDHGPDSSPAPDAATLCLDTILTTVVAFDLVVWLLDLYKRCGINFDANDDEDTDTRQPVPVESDDGIGP-----GTRAKKLLAEVLQSLLYAQGWVNGLCSPDTDCPNSNEMELSPG---LAETVKRVLPTWH----SQHHQQSVPFDHHVISLLGTGEDNGGLCKLVLLLMSFSPSCLGVLHPHLHCRVDSAVTILRYIKSVPEAVFCLNLLAQIAMVTS-RTGGGTFGAL--QLDEHLVEAIEALLSRFSVAEVAFVEILLSPGALSFILRAGCLAFTADWMVTATRGRIKRVLFDLGLPLNDYPQGCVDHNEADHYDADIDTDVCRRADEPALTGILEAAVRRWGDLLYIDSDKRPDIGSEGTICRLSWVLLLAPDAFFRLAFDSDGYDDSGTTSNTVL-NILAVVIPDTLSKLSMSSTRSWALLGGGGAVGETSVNGQQALI---IACTTHVLRLASAYLRARCAHGFYSTLSEGIRNHFETASWASDPSAPTLGVKIANACTELLVEVLSPRWRRLGSGXXXXXXXXXXXXXXXXADNTARIIAGVLVDVLNLLNALLVLLAAEAPRLPAHSHSESLASALGEAREALAE--GNRFCSTERGHDWLDHEPKTLAAYLQ 3843
C S GR G G D L+L +RV ESLL EEW+ + G GG+ C++S++ GE + LA+LVFGSYER L Q NL ARS++ +A+ SC+G A+D+ AVL K +GG + S N R S + T DRD G G S G V G E + G S PA CL TIL VV D+V W+L+LY RCG D + P S +G G LL EVLQSLL+AQGWVNG+C+ P S+EME ETV+ +L +W S + +P DH V+S LG DNG LCKLV+LL+S SPS LGVLHPH+ CR+DSAVT+LRYIK+VPEAVFCLNL + I +V + GG G L +L E L A++ LL+RFSV EVA I LS A+SF L AGC AF +DW+V A R+KR L + G QG D + AD V ++ AL GIL A +RRW DS S+ I RL+ VLL++PD LAFDSD + + L + LA +IP+TL LS + + V S G + + C + V ++ASA+L ARC +G+Y+T+ +R AS P P +A AC LL +L +R G G D+T + L+ VLNLL ALLVL+ ++ L ++ L AL E+ AL+E + +TER WLDH P LAA+LQ
Sbjct: 2 CDKSGGGRSWPGQQEGHDDG---GLVLQCARVYESLLHTAEEWVSS-----QGSTVGGMSCQASANRFGGGGRRGTRGEESVSLADLVFGSYERTLSYQCNLIARSENLAHDVAWLSCLGAAVDATSAVLFHKRXXXXXXXSGGRTSKNGTMGSWQLFNVRPSFVNTQELDRDCVGFPGSGGSRASGGAVGGGEQEYSIAPGEVSIPAS-----CLGTILKMVVEADVVSWMLNLYARCG------GDRSSGGTTTHPSRSSEGSSDVVDAHGATTCALLMEVLQSLLHAQGWVNGVCAHGAGRP-SHEMECGDRGSTFGETVRLMLQSWTTRGVSSGEEVHMPLDHFVMSQLGKRADNGDLCKLVVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTVPEAVFCLNLFSHIILVEGDKIDGGRGGELSSRLGEDLSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSDWLVAAPLARVKRALTEFGAFCE--RQGATDDDIADL--------VAGCSERVALKGILGATLRRWRVEAGKDSPHHSQ--SDAVIYRLACVLLMSPDTLLSLAFDSDSHPNGPMDLEQELASALATIIPETLEGLSAALSP---------VVSRHSDRGNTNYLASKLECASCVSQIASAFLHARCTYGYYTTIDRDVRARTGFASCQEPPEIP-----LARACGGLLQGLLR---QRRGQGSFGDG-----------GDSTFK----ALLSVLNLLGALLVLVGRDSFLL--RKTNQGLVLALQESCAALSEMLASTAVATERLTGWLDHAPDVLAAFLQ 756
BLAST of mRNA_H-paniculata_contig9161.16974.1 vs. uniprot
Match: D8LNY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY6_ECTSI) HSP 1 Score: 281 bits (720), Expect = 2.470e-80 Identity = 186/399 (46.62%), Postives = 229/399 (57.39%), Query Frame = 1
Query: 1 LKNELPDPIGTLAALVFRTLSLGIPRASGHLFAIGQLLSNAWKIPPLATSLADACMAD----------------------AAAAGXXXXXXXXXXXXXXXXXXXLAHAASSCSASDQVKSDVIFVLMELLQCCLAVAALDYRPCGAGSLQPPPPAAADPFVSVMLAVPRLLARRSSSDEPLQLHSVAYVATAAAYCRQRTDSGAPGWCANNTTGVPDVLVALFDGGTGSDRVPRDGVPA------SNTQRSGG-LCGSLKSLLMSSSYRVRAATSQLITTLCSS---GGDQHLACNANGAHKYVNCSAGRTGGAXXXXXAADGDITQRSLLLGSFFRERLIAAGVTDFLFEAIKKEREGTPGHYLEAVEALSLSSVEFFHSRNFSMKFAAPILLAAARG 1101
LK+ELPDP+ L +L+ T+SLG+PRASGHL+ +G+LL+NA LA +L ++C + G LA A S S SD KSDV+FV +ELL CC AV + G L PPPP DPFVS+MLA+PRLLARRSSSDE LQLH +AY+AT A YCRQRT+ G PGW ++N GVPDVL LF+G + PR+ +P S SGG LC +LK+LLMSSSYRVR+AT++LIT+LC G D L AH+ + R G + FFRE L+AAG TDFLFEAIK EREG+ +YLEA +A + S VEFFH+ NF MKFAAPILL A RG
Sbjct: 24 LKDELPDPVAVLTSLISSTVSLGLPRASGHLYLVGKLLANASYDRALAATLGNSCFGRRDGHGQRQQQTLVIGDRSGQGIVPSHGGSGVETRDEGEELRGFGAFLAAQALSTSCSDHTKSDVLFVALELLDCCTAVC-MGAGIAPQGPLMPPPPGG-DPFVSIMLALPRLLARRSSSDELLQLHGIAYLATVARYCRQRTEMGVPGW-SSNRDGVPDVLAELFEGAR--EATPREVLPTGGGGEGSKQSFSGGMLCSTLKTLLMSSSYRVRSATARLITSLCRDVPFGEDSEL------AHENAAMGSRRNGSSL-------------------FFREILLAAGSTDFLFEAIKSEREGSTRYYLEAADAFASSPVEFFHADNFCMKFAAPILLDAFRG 392
BLAST of mRNA_H-paniculata_contig9161.16974.1 vs. uniprot
Match: D8LNY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNY5_ECTSI) HSP 1 Score: 281 bits (720), Expect = 2.740e-79 Identity = 207/510 (40.59%), Postives = 265/510 (51.96%), Query Frame = 1
Query: 1486 CSPSNAGRLSGGGTTGEDVDRVDALLLNLSRVMESLLRMVEEWILTGYPGVSGMRGGGVGCRSSSHGNVP--------------GEPGILLAELVFGSYERILLDQHNLTARSDSFGSGIAFASCVGVAIDSILAVLDDKAVSTRWTLNGGSFGVARDVCSHS--NRRSSRLATVPRDRDVGRGYSEEGRMVEGMEVNAADDHGPDSSPAPDAATLCLDTILTTVVAFDLVVWLLDLYKRCGINFDANDDEDTDTRQPVPVESDDGIGPGTRAKKLLAEVLQSLLYAQGWVNGLCSPDTDCPNSNEMELS---PGLAETVKRVLPTWHSQH----HQQSVPFDHHVISLLGTGEDNGGLCKLV---------------LLLMSFSPSCLGVLHPHLHCRVDSAVTILRYIKSVPEAVFCLNLLAQIAMVTS-RTGGGTFGAL--QLDEHLVEAIEALLSRFSVAEVAFVEILLSPGALSFILRAGCLAFTADWMVTATRGRIKRVLFDLG 2892
C S GR G G D L+L +RV ESLL EEW+ + G GG C++S+ GE + LA+LVF SYER L Q NL A+S++ +A+ SC+G A+D+ AVL K GG + S N R S + T DRD G G V G E + G S PA CL+TIL VV D+V W+LDLY +CG + + T + Q SD G LL EVLQSLL AQGWVNG+C+ D P S EME P + ETV+ +L +W ++ + +P D HV+S LG DNG LCKLV +LL+S SPS LGVLHPH+ CR+DSAVT+LRYIK++PEAVFCLNL + I +V + GG G L +L E L A++ LL+RFSV EVA I LS A+SF L AGC AF ++W+V A R+KR L + G
Sbjct: 2 CDKSGGGRSWPGQQEGHDDG---GLVLQCARVYESLLHTAEEWVSS-----QGSTVGGTSCQASAXXXXXXXXXXXXXXRRGFRGEESVGLADLVFSSYERTLSYQCNLIAQSENLTHDVAWLSCLGAAVDATSAVLFHKRRREEAAARGGRTSKNGTMGSWQLLNVRPSFVNTQELDRDCSGGSGASGGAVGGGEQEYSIAPGEVSIPAS-----CLETILKVVVEADVVSWMLDLYAQCGGDTSSGGTT-THSSQSSERSSDVVDAHGATTCALLMEVLQSLLDAQGWVNGVCAHGADRP-SYEMECGGRGPTIGETVRLMLQSWTTRGVSGAEEVHMPLDQHVMSQLGKRADNGDLCKLVWWYRGRYNRVEAKQKVLLVSVSPSFLGVLHPHVGCRIDSAVTLLRYIKTLPEAVFCLNLFSHIVLVEGDKIDGGRGGELSSRLSEDLSAAVKDLLARFSVEEVALSLIPLSASAISFALLAGCEAFVSNWLVAAPLARVKRALTEFG 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9161.16974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9161.16974.1 >prot_H-paniculata_contig9161.16974.1 ID=prot_H-paniculata_contig9161.16974.1|Name=mRNA_H-paniculata_contig9161.16974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1431bp LKNELPDPIGTLAALVFRTLSLGIPRASGHLFAIGQLLSNAWKIPPLATSback to top mRNA from alignment at H-paniculata_contig9161:455..7997+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig9161.16974.1 ID=mRNA_H-paniculata_contig9161.16974.1|Name=mRNA_H-paniculata_contig9161.16974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7543bp|location=Sequence derived from alignment at H-paniculata_contig9161:455..7997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig9161:455..7997+ >mRNA_H-paniculata_contig9161.16974.1 ID=mRNA_H-paniculata_contig9161.16974.1|Name=mRNA_H-paniculata_contig9161.16974.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=8586bp|location=Sequence derived from alignment at H-paniculata_contig9161:455..7997+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |