mRNA_H-paniculata_contig9159.16972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9159.16972.1
Unique NamemRNA_H-paniculata_contig9159.16972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9159.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9159contigH-paniculata_contig9159:3188..7214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9159.16972.1prot_H-paniculata_contig9159.16972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9159 3188..3505 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.9115548-CDS-H-paniculata_contig9159:3187..35051622931140.9115548-CDS-H-paniculata_contig9159:3187..3505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9159 3188..3505 -
1691481609.2023473-CDS-H-paniculata_contig9159:3187..35051691481609.2023473-CDS-H-paniculata_contig9159:3187..3505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9159 3188..3505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.9296582-UTR-H-paniculata_contig9159:3505..35071622931140.9296582-UTR-H-paniculata_contig9159:3505..3507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9159 3506..3507 -
1691481609.2173157-UTR-H-paniculata_contig9159:3505..35071691481609.2173157-UTR-H-paniculata_contig9159:3505..3507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9159 3506..3507 -
1622931140.9512835-UTR-H-paniculata_contig9159:7150..72141622931140.9512835-UTR-H-paniculata_contig9159:7150..7214Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9159 7151..7214 -
1691481609.2316012-UTR-H-paniculata_contig9159:7150..72141691481609.2316012-UTR-H-paniculata_contig9159:7150..7214Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9159 7151..7214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9159.16972.1

>prot_H-paniculata_contig9159.16972.1 ID=prot_H-paniculata_contig9159.16972.1|Name=mRNA_H-paniculata_contig9159.16972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MSTFWRHSIATRSGGGDTAASTDFSGEKEPLNPSPPPPPPPPPPLPSGSN
TAVVGSSSIYGAAGGGGSGSIRTNRSRSDLRSPNRTVASLLRAGQTKHSR
SPAGGG
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mRNA from alignment at H-paniculata_contig9159:3188..7214-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9159.16972.1 ID=mRNA_H-paniculata_contig9159.16972.1|Name=mRNA_H-paniculata_contig9159.16972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4027bp|location=Sequence derived from alignment at H-paniculata_contig9159:3188..7214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGACAGCTGCGGCTGGCTGGGTGCGATCTGTGCCATTAGTTTGGGCG
ACCCTGAACAACGAGTGCGTGAGTATTTTCTTGATCATTTACTTAGTGAG
CGATCACACCACGTTAGCTAAGTTAGGTCCTGCTGCTGCCGTTGTGTGTT
TCATACGTACAGAGATGTTTTCTGGATTCAAGATGTTTCCGGAAATTCAG
TATTGTTTCTGAAGGGTACGACTTTGTAACTGATTGTTTGACTTGCAGTT
AGATTGCTGTTGAGAGGTACCTGTAGTCTGCTGTCAAGCATCGATGACGA
GGCAGTCATATGGTCCCATCTTCACGCCCGGATACCCTTCGACGGTGCTG
GTCGTACTCAGCGTGGGACCGGGGGCGAGGGGCTCGGACGTGCTGGGTAA
TACAATGGATAGATATATTGTATAGAGCTCTCTGGGAGAACTGACCGGTT
GCACTTGTCAAAAGACCTCATTGAGCATAATGCCGCAGGCATTGCTCTGG
CATCGCCTCCTAACGGATTTGTGTACCCCCAGAACACAGTGGGCAACAAA
TATGTGTGACTTCAGCTATTTTGCACTCAGTACCGTAGCACTTAGGTGTC
GACCTCACATACGCTCCGCCGTATCAGTACAACGCCGCAGTGTCATTTAT
TAGTAGTTCATGGAACAAATCAAAAGCCGTACAAGAATACTGGATACTCC
CTGGTGGTAACGTCAGTATATTGGAATCTTGGAATCAACACGGTGTGAAG
ACGTGCAGCAGTACAGGGAAAGTACAACAAAACCAGGAAGCGTCGCCCTA
GGCAGGAGGTACTCTGCCGTCTCTCTGTATCCAGTGATGGATGGAGGCAA
GTGCCTTGGTAGTGAGTTGGTCTGCTGAGGCCCCTCTGATTTATTTGAGA
GCTGACCATACTTGCGAAGTAGGTGGGTCAATGACTCGCTTTTACAGAAC
AGAAGGAGGCTTCCCAGTCTCTCGATCAGCTATCCTGTACAAGTCAATAT
ACCGGCAAGCCGGGAGTCCGTGTATTAGCTACTACTGTCATAAGGGTGAC
GGGAAAAACATTCGCTCAACCTGGTTCATCCACCAGTATCTACGCATCGG
TGCCTGTTTCAAGCTCATGAGATTAAGGAGCTCGCTTGTCAATATTGACC
ATTGCACCTGGTTGATCGGATCGCGTATTGTCTCCCCTGTACTGGCCCCT
CGATCACAGCCCCCTCCACGGGTTAACTATTAATCTGTTGATGTTGCTTT
CGGACTTTCGTTGCGTGTTGACTCACCTGATCGATGGGGTCAGCGTGCGT
CAACTTGCTGACGTATTATAATACAATCTGTGTTCGCCTGCTACTCGCTC
GCAACTAGTTAATACTGTTAACGATGAACCAACCCTCACCGTGCAATATA
ATATAGGATGTTCTTTCAATGTTCCGTATCCATATATCAGAGTGTGTGCG
AAATGCCAATGCTTGAAGAGCTGCGATCGTATCACCGTTCGTCGTCTGTC
ATGAACCGTCGCCACAAGGGGTCCCAATGCAGCTCTGAAATCGAGCAGTG
AGGGGTTCTGCCGGTTGGTTTGTAATGACTGTTGCCAAATGGTTGAGGCC
AGCAAATTCCACCAGTTTTCCAAACAAGGATTGGGAAACACTACGTGAGA
GTCTCGAAGCAAACACAGAAAACACGCACAGAGACAGTGTACACGCGCAC
TAGTGCGCACGATAGACCTTACTCCGGTGTACTCACCAGGCTTTATTTGA
TGGAAATGCAGCATGTATAGGGAAGGTGCAATAGCTCAGTGAGCAAAACG
GGTGGCAAACGAGGCATCTGCCAAGCAGTCAGGTGGGGGGGGTAGGCTAG
GCGGAAGGGGACGTCGGGGGAGCGGCCGTGGAAGGGGAGCGACTGCCGGT
TCAAAGGCAAGCACACGCCGGGGAGGGGGGGAGCGACCTCACCGCGGTCG
GACGAGCGTGTGTTGCGTCGACGGCGGCAGAGGCGGCCCCTAGCCAGGGA
TATATGCTTGTTCAATCTCGAAATTGCCGAATAGTTTAGGGGGTAAGGGA
ACGGTTAGGGCTAGGTTAAGGTCGTTCTTGGTCCCGCTCTGAATGGCCAA
GTAGAATTGTCCTTTGGTTGGTAGTGTGGTGTGTCTTACAAAGCAGGCAA
TGGCAGAGCTGCAGTAGTTGCAGTATATCGGGGTTTTCTGGGCGGGCAGG
CCGCAGTGAAGGCATAGAGAATGCATTTCGAAAACGTTGTTACTTGACTG
AATCAACACGGATTCAAGTGAAACTTTGCATCCCCCGGACAAATCCCCAA
ACTTGAAAATGGATTCAACAAAAAACTGAAGGTATTCACTTGAGTTTCAG
AATGGTCTGGTGTGTTCTTCGTGCCCTGGACCATCCACGACTGCTAATAT
TACTCGTTAATCGAATAAACGGGTGGTGGGTACTTTGTCCTATGTTTCCT
TTCATTCTGAAACTGAGGCGAATATTTGGAGTCAATTGTGGAAAACATTT
GTAAGTATTCGTATTTGTCTGGTGGTGAAACTTTGTGACGATAGATGTTT
ATATTCCAAAAACGATGGGTTTAACAATTAGAAAAAAATTGCAGGTAGAG
CATGCCGTGTTCGAAACTATATTTCAATAGCTGACAACAAAAACCCGGGG
ATGTGCAATTGCATCCCAGCGTTGGGTTTTTTTTCCTCTTTTTTTTTCCT
TAAAAAAAAACAGCCGATTAATGGGTACGTGTGCCGAAGAAGAGATTATG
GCGAGTCCCACAACGTGCGCAATGGCATGTTTTCTGAATTGTCCCTTAAA
TGGAACATCCTGTTTTTGGCGACTGTTTCCACTGTCACATGGGCCTTGCT
ACACTGGCTCTACCCCCACCGTTTTATTGTTATTATTTATTCCACGCTCT
GAGCTTCGATTTCATCTAGGCATCCTCTAGTTCGTGGTAGTTTCCACAAA
TGGTGAACGTTTGCATTTTTGTCCATGTCAGGTAAAAGTAAGATGCACCA
TGAGTTGCCAGGCAACAGAACCAACGGATATTCGACCAATAGCTGAAGGA
CTTTTCACCAATCAGGAAAAGCTGTAATTGAGTCCCTGTAGTCTCCATAT
GCTGCTACCGTACTGTCCACGAAAACAAATTATGTACAGTCCAAGGGAGG
ATAATCCTAACGCTCTGATGTATACCATGAAACTGTGGGACTGAAGGTGT
TTGTGCGTCTGTATATCTGGCGGGCTTGCTGAGCTCATTGTGTTGCCCGA
TTACTGCTGTGTGCATCATGCCCCGTGTTTTATCGAAGATCTCCGACATG
CATTATGGCATTAATATAGTACTATCAAGCCGGTAACCGCAAGCATCGAT
ACATCGGTCCTAGAAAACGATAGATGAATAATTTCGTATCGGACGATATA
TTAGACAATATCGGTACCGATAAACAGCCCTACCAACCTCCATCAAAGAA
CACACCTTTATTGACATTCATATATACCGTCAAGCTGGCTGTTTTTTCCC
CGATCATGCGTTCCTATCTTTTTTTGCCAGTACACCCAGTAAATACCAAT
TCACTGTGTATGCCGTCTCCCTCGGCTGAACAAATTCCACCCACAGAATC
CCCCCGGACGCAGCCGCCGGCCGTCCACGCCCACATCGAATCTCATACAT
CACACACACCTCAACACTTGGCCCCTCCCCCCCCCTCCTTTCTTGGGGCG
CGAGCAGCAATGTCGACCTTCTGGCGGCACTCCATAGCGACACGGAGCGG
TGGGGGTGATACCGCTGCCTCCACCGATTTTTCTGGGGAGAAGGAGCCAT
TGAATCCTAGCCCGCCGCCACCGCCACCGCCACCGCCGCCGCTGCCCAGC
GGTAGCAACACTGCCGTGGTCGGCTCTTCCTCCATCTATGGCGCCGCCGG
TGGTGGTGGTTCTGGGTCAATTCGGACGAACAGGTCACGCTCAGACCTGA
GGTCGCCTAACCGCACCGTGGCGAGCCTGCTCCGTGCTGGGCAGACGAAA
CACTCTCGGTCGCCTGCGGGGGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9159:3188..7214-

>mRNA_H-paniculata_contig9159.16972.1 ID=mRNA_H-paniculata_contig9159.16972.1|Name=mRNA_H-paniculata_contig9159.16972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig9159:3188..7214- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACCTTCTGGCGGCACTCCATAGCGACACGGAGCGGTGGGGGTGA
TACCGCTGCCTCCACCGATTTTTCTGGGGAGAAGGAGCCATTGAATCCTA
GCCCGCCGCCACCGCCACCGCCACCGCCGCCGCTGCCCAGCGGTAGCAAC
ACTGCCGTGGTCGGCTCTTCCTCCATCTATGGCGCCGCCGGTGGTGGTGG
TTCTGGGTCAATTCGGACGAACAGGTCACGCTCAGACCTGAGGTCGCCTA
ACCGCACCGTGGCGAGCCTGCTCCGTGCTGGGCAGACGAAACACTCTCGG
TCGCCTGCGGGGGGGGGGATGTCGACCTTCTGGCGGCACTCCATAGCGAC
ACGGAGCGGTGGGGGTGATACCGCTGCCTCCACCGATTTTTCTGGGGAGA
AGGAGCCATTGAATCCTAGCCCGCCGCCACCGCCACCGCCACCGCCGCCG
CTGCCCAGCGGTAGCAACACTGCCGTGGTCGGCTCTTCCTCCATCTATGG
CGCCGCCGGTGGTGGTGGTTCTGGGTCAATTCGGACGAACAGGTCACGCT
CAGACCTGAGGTCGCCTAACCGCACCGTGGCGAGCCTGCTCCGTGCTGGG
CAGACGAAACACTCTCGGTCGCCTGCGGGGGGGGGG
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