mRNA_H-paniculata_contig9158.16971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9158.16971.1
Unique NamemRNA_H-paniculata_contig9158.16971.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9158.16971.1 vs. uniprot
Match: D7FTD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD3_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.610e-57
Identity = 96/161 (59.63%), Postives = 122/161 (75.78%), Query Frame = 1 
Query:    1 RFQLAGRGVIKNILRTRLAEAPTDKRILFRLGKLAAQDGNIEDAVKFLRQAAEESNNNQVWVALARAEVKGWERDPTAGHERLRSAMEAYRRSIDLMVPEFVQTWELPLRLFELGGVYESYGSFEGALFIYQHIAGSTPSVAGFEDVLFRSAVLMRYMSSL 483
            RFQ AGR +++  L+ RL   P D+++L RLG L   DG++E+A++ LR AA+ S+++  W  LARAEV+ WE+DP  GHERLR A +AYRRS+DL+ P FVQ WELP RL ELGGVYES+GSFEGAL IYQ IA S P  +GFE VLFR AV+MRYM++L
Sbjct:  118 RFQKAGRKIVRQGLQHRLQATPDDRKLLGRLGSLEVADGDLENAIEHLRLAAKGSDDDVAWTTLARAEVRAWEQDPATGHERLRWACDAYRRSVDLLEPGFVQVWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEGVLFRCAVVMRYMATL 278
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BLAST of mRNA_H-paniculata_contig9158.16971.1 vs. uniprot
Match: A0A6H5K7H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7H6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.430e-49
Identity = 87/141 (61.70%), Postives = 110/141 (78.01%), Query Frame = 1 
Query:   61 APTDKRILFRLGKLAAQDGNIEDAVKFLRQAAEESNNNQVWVALARAEVKGWERDPTAGHERLRSAMEAYRRSIDLMVPEFVQTWELPLRLFELGGVYESYGSFEGALFIYQHIAGSTPSVAGFEDVLFRSAVLMRYMSSL 483
            +P  +++L RLG L   DG++E+AV+ LR AA+ S+++  W  LARAEV+ W++DP  GHERLR A +AYRRS+DL+ P FVQ WELP RL ELGGVYES+GSFEGAL IYQ IA S P  +GFEDVLFR AV+MRYM++L
Sbjct:  114 SPVQRKLLGRLGSLEVADGDLENAVEHLRLAAKGSDDDVAWTTLARAEVRAWQQDPATGHERLRWACDAYRRSVDLLEPGFVQVWELPARLLELGGVYESFGSFEGALHIYQRIASSMPLSSGFEDVLFRCAVVMRYMATL 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9158.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTD3_ECTSI2.610e-5759.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7H6_9PHAE2.430e-4961.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9158contigH-paniculata_contig9158:6707..8405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size501
Cds size501
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9158.16971.1prot_H-paniculata_contig9158.16971.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9158 6707..8405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.8374722-CDS-H-paniculata_contig9158:6706..68981622931140.8374722-CDS-H-paniculata_contig9158:6706..6898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 6707..6898 -
1691481609.1698954-CDS-H-paniculata_contig9158:6706..68981691481609.1698954-CDS-H-paniculata_contig9158:6706..6898Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 6707..6898 -
1622931140.853743-CDS-H-paniculata_contig9158:7773..79231622931140.853743-CDS-H-paniculata_contig9158:7773..7923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 7774..7923 -
1691481609.1831362-CDS-H-paniculata_contig9158:7773..79231691481609.1831362-CDS-H-paniculata_contig9158:7773..7923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 7774..7923 -
1622931140.8671744-CDS-H-paniculata_contig9158:8246..84051622931140.8671744-CDS-H-paniculata_contig9158:8246..8405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 8247..8405 -
1691481609.1921344-CDS-H-paniculata_contig9158:8246..84051691481609.1921344-CDS-H-paniculata_contig9158:8246..8405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9158 8247..8405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9158.16971.1

>prot_H-paniculata_contig9158.16971.1 ID=prot_H-paniculata_contig9158.16971.1|Name=mRNA_H-paniculata_contig9158.16971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
RFQLAGRGVIKNILRTRLAEAPTDKRILFRLGKLAAQDGNIEDAVKFLRQ
AAEESNNNQVWVALARAEVKGWERDPTAGHERLRSAMEAYRRSIDLMVPE
FVQTWELPLRLFELGGVYESYGSFEGALFIYQHIAGSTPSVAGFEDVLFR
SAVLMRYMSSLPVMTV*
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mRNA from alignment at H-paniculata_contig9158:6707..8405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9158.16971.1 ID=mRNA_H-paniculata_contig9158.16971.1|Name=mRNA_H-paniculata_contig9158.16971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1699bp|location=Sequence derived from alignment at H-paniculata_contig9158:6707..8405- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTCCAACTGGCGGGGCGAGGCGTTATCAAAAATATATTGCGAACCAG
GTTGGCGGAGGCACCGACGGACAAGCGAATACTTTTTCGTCTGGGCAAAT
TAGCAGCGCAAGATGGAAACATCGAAGACGCCGTCAAATTTCTTCGGCAA
GCTGCCGAGGTAGGGTGCGCATATATTGTAAGTATGTATTATGCTTTCCT
CTGGCCGCCAATGCAACAGGAGGAAATTAGCGAATAAATAACGGCTATCG
CAACTTTATGCGTGTCGCGCTCTCTTCCTGTTAACTACTAGAACCCCGCC
ACGTATACATTTGTAGTTAGCTGGGCACAACAACACGTTGGTTGAGTTGC
TGGGAAAGCTCGTATAGTCATACACGACGTTTGGCGGGTACGTTTGTACA
TCCCACGGAAAATGACTTCTCATCGACGAGATAACAAGCACGTTTCAAGC
GCTCTATATATTTGGACGTGGACACTTGTCAGGAGTCAAACAATAACCAG
GTATGGGTCGCTCTAGCACGTGCAGAGGTGAAGGGATGGGAACGGGACCC
GACTGCTGGTCACGAGCGATTGCGATCAGCGATGGAAGCCTACCGTCGCT
CCATTGATTTGATGGTCCCCGAATTCGTACAGGTGACAGCCCAAACCGTG
CAAGGACCATTATTCAGTGACCAGAGGCTGCATCCTCTAGCATCTTCGTG
TTTACAGTCAAGACATTTCTCTCTGTTGGTTTGATTTCCATCCATGGCTC
GGAAGTTGTCGCTGTGCCTGTTTGGTGTCTGCATATTCGTACCGACTTGA
GGCCTTGTTACAACTATGGGCCAATACTGACTAAGATATGTGCTAGCAAG
TTCACAGTAATAGTGGGGTAACATATCAATGTAGACGATATGCGAGGTAC
TTTGGATGGCTTCATAAAAAGAAAGATGCAACCGTTTCGGTAGCTGTGAA
TTTAACACGTGGGCGGCGCGTATAGGCTTGAACACTGTGGTGGTAAATCT
GAGTTCAAGCCTTGGAGAACATATGCAAAACATTCTACCAAGTCATGAAC
TAATATTTTCCAGTGTGTGGCTGAGATGAGTTGTGGATGTGTAACTTAGA
TGAATTGTGTTTTTTGCGACCTGTGGTTACGATTTGTAGTAGCCTGAATT
CTCTCTCTCTCTCTCTCTCTCTCTCTTTACACCAGTTTTACGAATTCTCT
CGTCTCAATTTTTTCCAACGTGGGAAATTACTTGATTATAATATAAAAAC
GAGAAACTACTGTATTTTCTGTATCTCCACAGTTTTCCGTCAAGAACTCG
AGGATGTCTCACAGTGACTCTGTGTACCTCTACGGACTAACTGCGGTTAA
CCAAGTATCGATCGAAGCCACGTATTTCCATAGGCCTCAACCCGCTACGG
ACAGCAAAGGAGCTTATTTTATCATCTGTTTCGCTTCATGCGACAAAGAT
CAACATGCGACCTTTCTTCAACTTTCCCATGCATTTGCCTGTCGTCGTCC
ACCAAAGACATGGGAATTGCCCCTCCGACTGTTCGAACTCGGGGGAGTTT
ACGAGTCGTACGGATCCTTCGAAGGAGCGCTATTCATCTACCAGCACATC
GCAGGCAGCACCCCCTCTGTTGCGGGATTCGAGGATGTACTCTTCCGCAG
TGCCGTGCTCATGCGGTACATGTCGTCTCTTCCGGTAATGACTGTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9158:6707..8405-

>mRNA_H-paniculata_contig9158.16971.1 ID=mRNA_H-paniculata_contig9158.16971.1|Name=mRNA_H-paniculata_contig9158.16971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig9158:6707..8405- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATTCCAACTGGCGGGGCGAGGCGTTATCAAAAATATATTGCGAACCAG
GTTGGCGGAGGCACCGACGGACAAGCGAATACTTTTTCGTCTGGGCAAAT
TAGCAGCGCAAGATGGAAACATCGAAGACGCCGTCAAATTTCTTCGGCAA
GCTGCCGAGAGATTCCAACTGGCGGGGCGAGGCGTTATCAAAAATATATT
GCGAACCAGGTTGGCGGAGGCACCGACGGACAAGCGAATACTTTTTCGTC
TGGGCAAATTAGCAGCGCAAGATGGAAACATCGAAGACGCCGTCAAATTT
CTTCGGCAAGCTGCCGAGGAGTCAAACAATAACCAGGTATGGGTCGCTCT
AGCACGTGCAGAGGTGAAGGGATGGGAACGGGACCCGACTGCTGGTCACG
AGCGATTGCGATCAGCGATGGAAGCCTACCGTCGCTCCATTGATTTGATG
GTCCCCGAATTCGTACAGGAGTCAAACAATAACCAGGTATGGGTCGCTCT
AGCACGTGCAGAGGTGAAGGGATGGGAACGGGACCCGACTGCTGGTCACG
AGCGATTGCGATCAGCGATGGAAGCCTACCGTCGCTCCATTGATTTGATG
GTCCCCGAATTCGTACAGACATGGGAATTGCCCCTCCGACTGTTCGAACT
CGGGGGAGTTTACGAGTCGTACGGATCCTTCGAAGGAGCGCTATTCATCT
ACCAGCACATCGCAGGCAGCACCCCCTCTGTTGCGGGATTCGAGGATGTA
CTCTTCCGCAGTGCCGTGCTCATGCGGTACATGTCGTCTCTTCCGGTAAT
GACTGTTTAGACATGGGAATTGCCCCTCCGACTGTTCGAACTCGGGGGAG
TTTACGAGTCGTACGGATCCTTCGAAGGAGCGCTATTCATCTACCAGCAC
ATCGCAGGCAGCACCCCCTCTGTTGCGGGATTCGAGGATGTACTCTTCCG
CAGTGCCGTGCTCATGCGGTACATGTCGTCTCTTCCGGTAATGACTGTTT
AG
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