mRNA_H-paniculata_contig9154.16968.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9154.16968.1
Unique NamemRNA_H-paniculata_contig9154.16968.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.330e-27
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:    3 AQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 126
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.620e-26
Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDE  FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:   43 AQASEARKRQHYARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 166
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.160e-26
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:   80 AQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 203
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.190e-25
Identity = 59/124 (47.58%), Postives = 79/124 (63.71%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDE  +K+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:   41 AQASEARKRQHYARPGHVSFDEGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 164
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.850e-25
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEAAEGALN-------PRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  201 AQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENTRTRSTSDQPTPTLWGWSVDA 324
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.070e-25
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  269 AQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 392
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JKF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF1_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.160e-25
Identity = 59/124 (47.58%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SE+R+  HYAR  H++FDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  161 APASESRKRQHYARPGHVAFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLFQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 284
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5KEF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF8_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.400e-25
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  308 AQASEARKRQHYARPGHVSFDERSFKLTSLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 431
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.010e-24
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  H+SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  321 AQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGHQDAENRRTRSTSDQSTPMIWGWSVDA 444
[Close]
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.280e-24
Identity = 60/124 (48.39%), Postives = 80/124 (64.52%), Query Frame = 1 
Query:  355 AATSEARESAHYARREHMSFDERCFKVTPPAVENFGRLGKCGEELLE*VASSVVGEQEDE*VSQKGPLLERMKQVILVTTQVAISRRVQRYRLTLRGMQEA-------AEGALNPRAWGWSLAA 705
            A  SEAR+  HYAR  ++SFDER FK+T  AVE+FGRLG+ G E ++ +A+  VG ++   ++ KG   ER+ Q++ V TQVAISRRVQRY+L LRG Q+A             P  WGWS+ A
Sbjct:  192 AQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9154.16968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2J3_9PHAE1.330e-2749.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL29_9PHAE1.620e-2648.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAD2_9PHAE2.160e-2649.19Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZN4_9PHAE1.190e-2547.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN7_9PHAE3.850e-2549.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE4.070e-2549.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKF1_9PHAE5.160e-2547.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF8_9PHAE6.400e-2549.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS53_9PHAE1.010e-2449.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPW7_9PHAE1.280e-2448.39Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9154contigH-paniculata_contig9154:2565..3342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size731
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9154.16968.1prot_H-paniculata_contig9154.16968.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9154 2725..3332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.5674148-UTR-H-paniculata_contig9154:2564..27241622931140.5674148-UTR-H-paniculata_contig9154:2564..2724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9154 2565..2724 -
1691481609.0467849-UTR-H-paniculata_contig9154:2564..27241691481609.0467849-UTR-H-paniculata_contig9154:2564..2724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9154 2565..2724 -
1622931140.6064205-UTR-H-paniculata_contig9154:3332..33421622931140.6064205-UTR-H-paniculata_contig9154:3332..3342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9154 3333..3342 -
1691481609.080539-UTR-H-paniculata_contig9154:3332..33421691481609.080539-UTR-H-paniculata_contig9154:3332..3342Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9154 3333..3342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.5806-CDS-H-paniculata_contig9154:2724..29431622931140.5806-CDS-H-paniculata_contig9154:2724..2943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9154 2725..2943 -
1691481609.061296-CDS-H-paniculata_contig9154:2724..29431691481609.061296-CDS-H-paniculata_contig9154:2724..2943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9154 2725..2943 -
1622931140.5941544-CDS-H-paniculata_contig9154:2990..33321622931140.5941544-CDS-H-paniculata_contig9154:2990..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9154 2991..3332 -
1691481609.072054-CDS-H-paniculata_contig9154:2990..33321691481609.072054-CDS-H-paniculata_contig9154:2990..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9154 2991..3332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9154.16968.1

>prot_H-paniculata_contig9154.16968.1 ID=prot_H-paniculata_contig9154.16968.1|Name=mRNA_H-paniculata_contig9154.16968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MSTTSAEHVLVEPRIFSVKPNLAARCPCCGAEGDTTRHARIYYRAGAQVD
QYQLLPHAVAKLLKRLGIRSTVDVYGGPGLPDGHCCPNRRAPRCSHQRLL
LQGSSDRRHASRSPPPPLPRRAKARTTLEENICPSMSVVSKLPPPRWKTL
GVSESAERSCLSRWHPAWWGNKRTNRFRRKDHCWSG*
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mRNA from alignment at H-paniculata_contig9154:2565..3342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9154.16968.1 ID=mRNA_H-paniculata_contig9154.16968.1|Name=mRNA_H-paniculata_contig9154.16968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=778bp|location=Sequence derived from alignment at H-paniculata_contig9154:2565..3342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCTGGTCAATGAGCACAACATCAGCAGAGCACGTGCTCGTAGAACCGA
GAATTTTTAGCGTTAAGCCCAACCTAGCCGCGCGATGCCCATGCTGCGGA
GCGGAGGGCGACACCACGCGCCACGCCCGCATCTACTATCGAGCGGGGGC
GCAGGTAGACCAATACCAACTGCTACCACACGCCGTCGCGAAACTGCTTA
AGCGACTGGGTATCAGGAGCACGGTGGACGTTTACGGCGGACCGGGACTA
CCGGATGGACATTGTTGTCCCAATAGGAGAGCTCCGAGATGCTCCCATCA
ACGCCTACTGCTACAAGGGTCCTCTGATCGACGTCATGCAAGCAGATCCC
CAGTCAGCAGGGCACCTCCAGCGCGGGAGCGCTACCATCGACGGCTCAGC
CGCCGCCACTTCCGAGGCGCGCGAAAGCGCGCACTACGCTCGAAGAGAAC
ATATGTCCTTCGATGAGCGTTGTTTCAAAGTTACCCCCCCCGCGGTGGAA
AACTTTGGGCGTCTCGGAAAGTGCGGAGAGGAGCTGCTTGAGTAGGTGGC
ATCCAGCGTGGTGGGGGAACAAGAGGACGAATAGGTTTCGCAGAAAGGAC
CACTGCTGGAGCGGATGAAACAAGTCATTTTGGTGACTACACAGGTAGCC
ATCTCGAGACGGGTGCAGAGATACAGACTGACTCTACGGGGAATGCAAGA
AGCAGCAGAAGGGGCCCTCAACCCTCGAGCGTGGGGATGGAGTTTAGCGG
CGCCGTAGTGTTCCATCACGGTGTTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig9154:2565..3342-

>mRNA_H-paniculata_contig9154.16968.1 ID=mRNA_H-paniculata_contig9154.16968.1|Name=mRNA_H-paniculata_contig9154.16968.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig9154:2565..3342- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACAACATCAGCAGAGCACGTGCTCGTAGAACCGAGAATTTTTAG
CGTTAAGCCCAACCTAGCCGCGCGATGCCCATGCTGCGGAGCGGAGGGCG
ACACCACGCGCCACGCCCGCATCTACTATCGAGCGGGGGCGCAGGTAGAC
CAATACCAACTGCTACCACACGCCGTCGCGAAACTGCTTAAGCGACTGGG
TATCAGGAGCACGGTGGACGTTTACGGCGGACCGGGACTACCGGATGGAC
ATTGTTGTCCCAATAGGAGAGCTCCGAGATGCTCCCATCAACGCCTACTG
CTACAAGGGTCCTCTGATCGACGTCATGCAAGCAGATCCCCAATGAGCAC
AACATCAGCAGAGCACGTGCTCGTAGAACCGAGAATTTTTAGCGTTAAGC
CCAACCTAGCCGCGCGATGCCCATGCTGCGGAGCGGAGGGCGACACCACG
CGCCACGCCCGCATCTACTATCGAGCGGGGGCGCAGGTAGACCAATACCA
ACTGCTACCACACGCCGTCGCGAAACTGCTTAAGCGACTGGGTATCAGGA
GCACGGTGGACGTTTACGGCGGACCGGGACTACCGGATGGACATTGTTGT
CCCAATAGGAGAGCTCCGAGATGCTCCCATCAACGCCTACTGCTACAAGG
GTCCTCTGATCGACGTCATGCAAGCAGATCCCCACCGCCGCCACTTCCGA
GGCGCGCGAAAGCGCGCACTACGCTCGAAGAGAACATATGTCCTTCGATG
AGCGTTGTTTCAAAGTTACCCCCCCCGCGGTGGAAAACTTTGGGCGTCTC
GGAAAGTGCGGAGAGGAGCTGCTTGAGTAGGTGGCATCCAGCGTGGTGGG
GGAACAAGAGGACGAATAGGTTTCGCAGAAAGGACCACTGCTGGAGCGGA
TGACCGCCGCCACTTCCGAGGCGCGCGAAAGCGCGCACTACGCTCGAAGA
GAACATATGTCCTTCGATGAGCGTTGTTTCAAAGTTACCCCCCCCGCGGT
GGAAAACTTTGGGCGTCTCGGAAAGTGCGGAGAGGAGCTGCTTGAGTAGG
TGGCATCCAGCGTGGTGGGGGAACAAGAGGACGAATAGGTTTCGCAGAAA
GGACCACTGCTGGAGCGGATGA
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