mRNA_H-paniculata_contig915.16965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig915.16965.1
Unique NamemRNA_H-paniculata_contig915.16965.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig915.16965.1 vs. uniprot
Match: A0A180GBB8_PUCT1 (Uncharacterized protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GBB8_PUCT1)

HSP 1 Score: 52.4 bits (124), Expect = 1.680e-5
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:    4 RGVRE-RESILNEEDLSMELLGWLKIQK--RVTTHSTHKFIKETLLAREGGILKLAQYGLSLPISKTTTNVWMRKLGCKHDKVKQSYYTDGHETPDVQEARKLYVRE 315
            RG R+   S+L+   L  ELL W   Q    VT  +  ++   T+           Q+ ++  +S+ T   WM +LG +  + ++  Y DGHE PDV EARK Y++E
Sbjct:  215 RGNRKTHHSLLDNAKLRKELLTWAASQTPGHVTPLTFREYTLHTVFP---------QFDINRSLSRQTATRWMIRLGYRPQEYRKCLYFDGHERPDVIEARKKYIKE 312
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BLAST of mRNA_H-paniculata_contig915.16965.1 vs. uniprot
Match: A0A180GN50_PUCT1 (Uncharacterized protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GN50_PUCT1)

HSP 1 Score: 52.4 bits (124), Expect = 1.720e-5
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:    4 RGVRE-RESILNEEDLSMELLGWLKIQK--RVTTHSTHKFIKETLLAREGGILKLAQYGLSLPISKTTTNVWMRKLGCKHDKVKQSYYTDGHETPDVQEARKLYVRE 315
            RG R+   S+L+   L  ELL W   Q    VT  +  ++   T+           Q+ ++  +S+ T   WM +LG +  + ++  Y DGHE PDV EARK Y++E
Sbjct:  309 RGNRKTHHSLLDNAKLRKELLTWAASQTPGHVTPLTFREYTLHTVFP---------QFDINRSLSRQTATRWMIRLGYRPQEYRKCLYFDGHERPDVIEARKKYIKE 406
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BLAST of mRNA_H-paniculata_contig915.16965.1 vs. uniprot
Match: H6QVI1_PUCGT (Uncharacterized protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=H6QVI1_PUCGT)

HSP 1 Score: 52.0 bits (123), Expect = 2.310e-5
Identity = 33/98 (33.67%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   22 ESILNEEDLSMELLGWL--KIQKRVTTHSTHKFIKETLLAREGGILKLAQYGLSLPISKTTTNVWMRKLGCKHDKVKQSYYTDGHETPDVQEARKLYV 309
            +SIL++  +   L  W+  K    +T  S  + +  TLL +         +G++  IS+ T   WM +LG    +  +S Y DGHE PDV EARK Y+
Sbjct:  186 QSILDDIKIREALYAWVASKNPGEITPLSFCEHVSNTLLPK---------FGINKTISRPTATRWMGRLGFSPQEYHKSLYYDGHERPDVVEARKNYI 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig915.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A180GBB8_PUCT11.680e-532.71Uncharacterized protein n=1 Tax=Puccinia triticina... [more]
A0A180GN50_PUCT11.720e-532.71Uncharacterized protein n=1 Tax=Puccinia triticina... [more]
H6QVI1_PUCGT2.310e-533.67Uncharacterized protein n=1 Tax=Puccinia graminis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig915contigH-paniculata_contig915:52..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.9097068-CDS-H-paniculata_contig915:51..3871622931139.9097068-CDS-H-paniculata_contig915:51..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig915 52..387 -
1691481608.7356699-CDS-H-paniculata_contig915:51..3871691481608.7356699-CDS-H-paniculata_contig915:51..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig915 52..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig915.16965.1prot_H-paniculata_contig915.16965.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig915 52..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig915.16965.1

>prot_H-paniculata_contig915.16965.1 ID=prot_H-paniculata_contig915.16965.1|Name=mRNA_H-paniculata_contig915.16965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
GRGVRERESILNEEDLSMELLGWLKIQKRVTTHSTHKFIKETLLAREGGI
LKLAQYGLSLPISKTTTNVWMRKLGCKHDKVKQSYYTDGHETPDVQEARK
LYVREQRKLALR
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mRNA from alignment at H-paniculata_contig915:52..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig915.16965.1 ID=mRNA_H-paniculata_contig915.16965.1|Name=mRNA_H-paniculata_contig915.16965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig915:52..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGGGGTGCGCGAGCGAGAGTCGATCCTGAACGAAGAAGACCTCTC
CATGGAGTTGCTCGGCTGGCTCAAGATCCAGAAACGAGTCACGACGCACA
GCACCCACAAGTTTATCAAGGAGACACTGCTTGCACGAGAAGGAGGGATC
CTGAAGCTAGCACAGTATGGGCTGAGCCTTCCAATTTCCAAGACTACCAC
CAACGTCTGGATGCGCAAGCTAGGATGCAAGCACGACAAAGTCAAGCAGT
CGTACTACACTGACGGCCATGAAACGCCTGACGTCCAAGAGGCCCGAAAG
CTTTACGTTCGTGAGCAACGAAAACTGGCGCTGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig915:52..387-

>mRNA_H-paniculata_contig915.16965.1 ID=mRNA_H-paniculata_contig915.16965.1|Name=mRNA_H-paniculata_contig915.16965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig915:52..387- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGGGGTGCGCGAGCGAGAGTCGATCCTGAACGAAGAAGACCTCTC
CATGGAGTTGCTCGGCTGGCTCAAGATCCAGAAACGAGTCACGACGCACA
GCACCCACAAGTTTATCAAGGAGACACTGCTTGCACGAGAAGGAGGGATC
CTGAAGCTAGCACAGTATGGGCTGAGCCTTCCAATTTCCAAGACTACCAC
CAACGTCTGGATGCGCAAGCTAGGATGCAAGCACGACAAAGTCAAGCAGT
CGTACTACACTGACGGCCATGAAACGCCTGACGTCCAAGAGGCCCGAAAG
CTTTACGTTCGTGAGCAACGAAAACTGGCGCTGCGAGGCAGAGGGGTGCG
CGAGCGAGAGTCGATCCTGAACGAAGAAGACCTCTCCATGGAGTTGCTCG
GCTGGCTCAAGATCCAGAAACGAGTCACGACGCACAGCACCCACAAGTTT
ATCAAGGAGACACTGCTTGCACGAGAAGGAGGGATCCTGAAGCTAGCACA
GTATGGGCTGAGCCTTCCAATTTCCAAGACTACCACCAACGTCTGGATGC
GCAAGCTAGGATGCAAGCACGACAAAGTCAAGCAGTCGTACTACACTGAC
GGCCATGAAACGCCTGACGTCCAAGAGGCCCGAAAGCTTTACGTTCGTGA
GCAACGAAAACTGGCGCTGCGA
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