mRNA_H-paniculata_contig9144.16963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9144.16963.1
Unique NamemRNA_H-paniculata_contig9144.16963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: D7G906_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G906_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.180e-30
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    4 SLCRSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHTRPS 204
            S+  SK+EASKA V DISGGCGSMYKIEVESPLF GKGLVAQHR+VK AL  EIADMHGLTL TRPS
Sbjct:   62 SILESKIEASKAVVHDISGGCGSMYKIEVESPLFRGKGLVAQHRMVKAALATEIADMHGLTLLTRPS 128          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A836CI04_9STRA (Bola protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI04_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.860e-20
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 LCRSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHTRPS 204
            L   +++A+K TV+DISGGCGSMY I +ESPLF G  LV QH+LVK  LK EIA MHGLTL T+ S
Sbjct:   47 LLGKELKATKVTVEDISGGCGSMYSIAIESPLFKGLSLVKQHQLVKSTLKKEIAAMHGLTLQTKVS 112          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A7S2CEL3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEL3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.080e-20
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   22 VEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHTRPS 204
            +E +   V+D+SGGCGSMYKIEVESPLF G  LV QHR+V D LK EI +MHGLT++TR S
Sbjct:   69 LEPTDVLVEDVSGGCGSMYKIEVESPLFRGVNLVKQHRMVTDTLKKEIGEMHGLTINTRRS 129          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A1V9Y5G4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5G4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.560e-19
Identity = 41/61 (67.21%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   13 RSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHT 195
            R ++ A+   V DISGGCGSMYKIEV SP F GK +VAQHRLV   LK EIA MHGLTL T
Sbjct:   27 RQELSATHVKVDDISGGCGSMYKIEVASPTFEGKNVVAQHRLVNQVLKEEIAGMHGLTLKT 87          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A067C2D2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C2D2_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 1.910e-18
Identity = 40/61 (65.57%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   13 RSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHT 195
            R  + A+   V DISGGCGSMYKIEV SP F GK  VAQHRLV + LK EI  MHGLTL T
Sbjct:   31 RQALSATHVKVDDISGGCGSMYKIEVASPTFEGKNRVAQHRLVNEVLKEEIGGMHGLTLKT 91          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A5A8C827_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C827_CAFRO)

HSP 1 Score: 79.3 bits (194), Expect = 6.430e-18
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    7 LCRSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHT 195
            L    +EA    V+D+SGGCGSMY++ V S  F G  LV QHR+VKDALKAEIADMHGLT+ T
Sbjct:    4 LLSDALEADYVMVRDVSGGCGSMYQVLVVSSKFQGVPLVKQHRMVKDALKAEIADMHGLTVRT 66          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A8J2SN00_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN00_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.930e-18
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   13 RSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHT 195
            R +++A   TV+D+SGGCG+MYK  VESP F G G+V QH+LV+  LKAEIA+MHG TL T
Sbjct:   37 RDELDAVNVTVEDVSGGCGAMYKAYVESPRFVGLGVVKQHKLVQGVLKAEIAEMHGFTLKT 97          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A4D9DBR1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBR1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.440e-17
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   43 VQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHTRP 201
            +QD+SGGCG+MY +EVES LF GK LVAQHR+V   L  EI++MHGL+L TRP
Sbjct:   71 IQDVSGGCGAMYNMEVESELFRGKALVAQHRMVNQVLAKEISEMHGLSLKTRP 123          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A024TUJ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUJ1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.150e-17
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   22 VEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHT 195
            ++A+   V DISGGCGSMYKIEV SP F GK  VAQHRLV + +K EI  MHGLT+ T
Sbjct:   34 LDATHVQVDDISGGCGSMYKIEVVSPAFEGKSRVAQHRLVNEVIKEEIGGMHGLTVKT 91          
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Match: A0A7S2H125_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H125_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.870e-17
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   22 VEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDALKAEIADMHGLTLHTR 198
            + AS  +V DISGGCG+MYK+EVESP F G  ++ QHRLV   LK EI +MHGLTL TR
Sbjct:   50 LNASFVSVDDISGGCGAMYKLEVESPDFRGLNMLKQHRLVTQVLKKEIGEMHGLTLQTR 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9144.16963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G906_ECTSI8.180e-3082.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CI04_9STRA2.860e-2063.64Bola protein n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2CEL3_9STRA3.080e-2065.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9Y5G4_9STRA1.560e-1967.21Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067C2D2_SAPPC1.910e-1865.57Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5A8C827_CAFRO6.430e-1861.90Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A8J2SN00_9STRA7.930e-1860.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9DBR1_9STRA1.440e-1766.04Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A024TUJ1_9STRA2.150e-1763.79Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2H125_9STRA2.870e-1762.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9144contigH-paniculata_contig9144:9448..9660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7G906
Preferred nameBOLA3
KEGG koko:K22075
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006355,GO:0006357,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0010467,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0031974,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0097428,GO:0106035,GO:0140110,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG3348@2759
Ec32 ortholog descriptionBolA protein
Ec32 orthologEc-15_002390.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.6953497-CDS-H-paniculata_contig9144:9447..96601622931139.6953497-CDS-H-paniculata_contig9144:9447..9660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9144 9448..9660 +
1691481608.621952-CDS-H-paniculata_contig9144:9447..96601691481608.621952-CDS-H-paniculata_contig9144:9447..9660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9144 9448..9660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9144.16963.1prot_H-paniculata_contig9144.16963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9144 9448..9660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9144.16963.1

>prot_H-paniculata_contig9144.16963.1 ID=prot_H-paniculata_contig9144.16963.1|Name=mRNA_H-paniculata_contig9144.16963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
YSLCRSKVEASKATVQDISGGCGSMYKIEVESPLFHGKGLVAQHRLVKDA
LKAEIADMHGLTLHTRPSAI*
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mRNA from alignment at H-paniculata_contig9144:9448..9660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9144.16963.1 ID=mRNA_H-paniculata_contig9144.16963.1|Name=mRNA_H-paniculata_contig9144.16963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig9144:9448..9660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTCTTTGTGCAGGTCTAAGGTGGAAGCGTCAAAAGCCACTGTCCAAGA TATTTCAGGGGGATGTGGCTCCATGTATAAAATTGAGGTTGAATCGCCCC TGTTTCACGGAAAGGGATTGGTGGCGCAACATCGGTTGGTCAAGGACGCA CTCAAGGCCGAGATTGCAGACATGCATGGTCTCACGCTGCATACACGACC ATCTGCTATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9144:9448..9660+

>mRNA_H-paniculata_contig9144.16963.1 ID=mRNA_H-paniculata_contig9144.16963.1|Name=mRNA_H-paniculata_contig9144.16963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig9144:9448..9660+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTCTTTGTGCAGGTCTAAGGTGGAAGCGTCAAAAGCCACTGTCCAAGA
TATTTCAGGGGGATGTGGCTCCATGTATAAAATTGAGGTTGAATCGCCCC
TGTTTCACGGAAAGGGATTGGTGGCGCAACATCGGTTGGTCAAGGACGCA
CTCAAGGCCGAGATTGCAGACATGCATGGTCTCACGCTGCATACACGACC
ATCTGCTATTTAATATTCTTTGTGCAGGTCTAAGGTGGAAGCGTCAAAAG
CCACTGTCCAAGATATTTCAGGGGGATGTGGCTCCATGTATAAAATTGAG
GTTGAATCGCCCCTGTTTCACGGAAAGGGATTGGTGGCGCAACATCGGTT
GGTCAAGGACGCACTCAAGGCCGAGATTGCAGACATGCATGGTCTCACGC
TGCATACACGACCATCTGCTATTTAA
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