mRNA_H-paniculata_contig9141.16962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9141.16962.1
Unique NamemRNA_H-paniculata_contig9141.16962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.520e-66
Identity = 124/325 (38.15%), Postives = 188/325 (57.85%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   R +   S       G +L   D  E  T+FP+R++V +L+W AT TRPDIA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL + VK+ +F
Sbjct:   53 CELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-------GVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 369          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.490e-65
Identity = 121/325 (37.23%), Postives = 191/325 (58.77%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C  +  LR FD +QAF+++D+DE+V++ +        G++ KLNK++Y L QA R W+      +  +GF Q  AD  +FR + +G V + ++VHVDDI +  +     + F   L     +K+LGD  +Y GC   R+  A  LK+ Q  Y + +  +FGVE  + I        L  G +L   D+ EE+  +P+R+++ +L+W AT TRPDIA AVR VAR+C +P   H +A + I+  ++ T + GI +  G   GLS+E + ++D+ +    RRSVSGG+VM   G ISW SR Q+ +   T+EAEYV+L++ +K+ +F
Sbjct:   29 CEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 345          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 7.440e-64
Identity = 121/325 (37.23%), Postives = 191/325 (58.77%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C  +  LR FD +QAF+++D+DE+V++ +        G++ KLNK++Y L QA R W+      +  +GF Q  AD  +FR + +G V + ++VHVDDI +  +     + F   L     +K+LGD  +Y GC   R+  A  LK+ Q  Y + +  +FGVE  + I        L  G +L   D+ EE+  +P+R+++ +L+W AT TRPDIA AVR VAR+C +P   H +A + I+  ++ T + GI +  G   GLS+E + ++D+ +    RRSVSGG+VM   G ISW SR Q+ +   T+EAEYV+L++ +K+ +F
Sbjct:  203 CEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 519          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.850e-62
Identity = 124/325 (38.15%), Postives = 188/325 (57.85%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   R +   S       G +L   D  E  T+FP+R++V +L+W AT TRPDIA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL + VK+ +F
Sbjct: 1389 CELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-------GVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 1705          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.860e-62
Identity = 124/325 (38.15%), Postives = 188/325 (57.85%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   R +   S       G +L   D  E  T+FP+R++V +L+W AT TRPDIA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL + VK+ +F
Sbjct: 1175 CELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-------GVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 1491          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 4.100e-62
Identity = 124/325 (38.15%), Postives = 188/325 (57.85%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   R +   S       G +L   D  E  T+FP+R++V +L+W AT TRPDIA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL + VK+ +F
Sbjct: 1243 CELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-------GVKLSDFDADEVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 1559          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5JG40_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG40_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.550e-62
Identity = 124/325 (38.15%), Postives = 187/325 (57.54%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   R +   S       G +L   D  E  T FP+R++V +L+W AT TRPDIA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL + VK+ +F
Sbjct:  883 CELNLDLCHFDIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSS-------GVKLSDFDADEVATDFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 1199          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.650e-61
Identity = 121/325 (37.23%), Postives = 191/325 (58.77%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C  +  LR FD +QAF+++D+DE+V++ +        G++ KLNK++Y L QA R W+      +  +GF Q  AD  +FR + +G V + ++VHVDDI +  +     + F   L     +K+LGD  +Y GC   R+  A  LK+ Q  Y + +  +FGVE  + I        L  G +L   D+ EE+  +P+R+++ +L+W AT TRPDIA AVR VAR+C +P   H +A + I+  ++ T + GI +  G   GLS+E + ++D+ +    RRSVSGG+VM   G ISW SR Q+ +   T+EAEYV+L++ +K+ +F
Sbjct:  724 CEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGE-EERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 1040          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5J9U0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9U0_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 6.430e-59
Identity = 121/325 (37.23%), Postives = 185/325 (56.92%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C L+ DL  FD EQAF++++++E+VY+ +        G++ KL K++Y L QA R W+      + A+GF+Q  AD  +FR + DG V ++++VHVDDI A  + R   + F   L     +K+LG+  +Y GC   RN++   L + Q  +   +A ++GV   + +   S       G +L   D  E  T FP+R++V +L+W AT TRP IA AVR VAR+C +P   H  A + I+     T  +GI +  G   G S++ Y ++DF +    RRSVSGG+V    GA+SW SR Q+ +   T+EAEYVAL   +K+ +F
Sbjct:  523 CELNLDLCHFDVEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGE-RERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGKSVPMSS-------GVKLSDFDADEVATDFPFRELVGSLMWLATQTRPGIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGX-MKEILF 838          
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.770e-58
Identity = 112/325 (34.46%), Postives = 186/325 (57.23%), Query Frame = 1
Query:  118 CRLDGDLRQFDAEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKFCDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEWFATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFGVEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMTRPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYG-GQGCGLSIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAEYVALSESVKDAIF 1089
            C  + DL  FD +QAF+++++DE+V++ +        G++ KL K++Y L QA R W+      +  +GF Q  AD  +FR + +G V M+++VHVDDI A  + +   + F   L     +K+LG+  +Y  C   R+ +   L++ Q  + + +A ++G+E  R +        L    +L   DE E     P+R++V +L+W AT TRPDIA AVR VAR+C +P   H KA + I+  +  T   GI +  G   G+S++ + ++D+ +    RRSVSGG+VM   G ++W SR Q+ +   T+EAEYVA+++ +K+ +F
Sbjct:   29 CEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQ-KERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVP-------LPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLF 345          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9141.16962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFG2_9PHAE3.520e-6638.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE1.490e-6537.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE7.440e-6437.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE3.850e-6238.15Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE3.860e-6238.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE4.100e-6238.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JG40_9PHAE8.550e-6238.15Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5K2R1_9PHAE1.650e-6137.23Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5J9U0_9PHAE6.430e-5937.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE3.770e-5834.46Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9141contigH-paniculata_contig9141:4948..6145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue4.1e-49
Seed eggNOG ortholog164328.Phyra71619
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1092
Cds size1092
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.6403468-CDS-H-paniculata_contig9141:4947..50731622931139.6403468-CDS-H-paniculata_contig9141:4947..5073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9141 4948..5073 +
1691481608.5988486-CDS-H-paniculata_contig9141:4947..50731691481608.5988486-CDS-H-paniculata_contig9141:4947..5073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9141 4948..5073 +
1622931139.6528928-CDS-H-paniculata_contig9141:5179..61451622931139.6528928-CDS-H-paniculata_contig9141:5179..6145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9141 5180..6145 +
1691481608.6113155-CDS-H-paniculata_contig9141:5179..61451691481608.6113155-CDS-H-paniculata_contig9141:5179..6145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9141 5180..6145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9141.16962.1prot_H-paniculata_contig9141.16962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9141 4948..6145 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9141.16962.1

>prot_H-paniculata_contig9141.16962.1 ID=prot_H-paniculata_contig9141.16962.1|Name=mRNA_H-paniculata_contig9141.16962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=364bp
MVNHGLWEQIAQPKNKLAVGTKVLYKRKVSKGGKVEKYKCRLDGDLRQFD
AEQAFLKADIDEEVYIEISGRFRHFPGVVGKLNKAIYRLVQARRCWNIKF
CDGMTAIGFKQSRADPFMFRKVVDGEVAMVVIVHVDDILAHAKGRATMEW
FATQLGGRFKLKDLGDAEFYMGCHLTRNRKARELKLDQHMYVQSMAEKFG
VEKMRRISAMSLASALLNGDELKTRDEKEEMTKFPYRDVVRALVWTATMT
RPDIAYAVRGVARFCENPGSAHKKAVIKIVQCLLHTMEWGIKYGGQGCGL
SIEAYTESDFGAYLDTRRSVSGGVVMLAKGAISWHSRMQEIIVSGTSEAE
YVALSESVKDAIF*
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mRNA from alignment at H-paniculata_contig9141:4948..6145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9141.16962.1 ID=mRNA_H-paniculata_contig9141.16962.1|Name=mRNA_H-paniculata_contig9141.16962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1198bp|location=Sequence derived from alignment at H-paniculata_contig9141:4948..6145+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAATCACGGACTATGGGAGCAGATAGCCCAACCAAAGAACAAGCT TGCGGTGGGAACGAAGGTGCTTTACAAACGCAAGGTCAGCAAGGGCGGCA AGGTGGAGAAGTACAAATGTAGACTTGTCGACCAGGGCTCCGGCAGATCG AAGGGGTACATTACACCGAGAAGTACTCATATACGCCGGCGACCGCGTCC ATCCGGATGCTCTTGGCGACCGCAGCGGTGAGGACGGAGATCTGCGACAA TTCGACGCTGAGCAGGCGTTTTTGAAGGCGGACATTGACGAGGAGGTATA CATCGAGATCTCCGGAAGGTTCCGACATTTCCCGGGAGTAGTGGGTAAGC TGAACAAGGCAATCTACCGGCTCGTTCAGGCGCGGCGATGCTGGAACATC AAGTTCTGCGACGGCATGACGGCAATCGGGTTCAAGCAGTCAAGGGCAGA CCCATTTATGTTCAGGAAGGTGGTCGACGGAGAAGTGGCAATGGTGGTCA TCGTGCACGTGGACGACATTCTTGCCCACGCAAAGGGCCGCGCGACAATG GAGTGGTTCGCAACCCAGCTAGGGGGAAGGTTCAAGCTGAAAGACTTGGG TGACGCCGAGTTCTACATGGGTTGTCACCTTACCCGAAACAGGAAGGCGC GCGAGCTGAAACTCGATCAACACATGTATGTGCAGTCGATGGCGGAAAAA TTCGGGGTCGAGAAGATGAGGAGGATATCAGCCATGTCGTTAGCATCAGC ACTATTAAATGGGGACGAACTGAAGACCCGGGACGAGAAGGAGGAAATGA CGAAATTTCCATATCGAGACGTAGTAAGGGCGCTAGTGTGGACGGCGACG ATGACGCGACCGGATATAGCGTACGCAGTACGTGGCGTTGCAAGGTTCTG CGAAAACCCCGGGTCAGCACACAAGAAGGCAGTGATTAAGATAGTGCAGT GTTTATTACACACGATGGAATGGGGCATCAAATATGGTGGGCAAGGCTGT GGGCTTAGCATAGAAGCATATACAGAGTCGGATTTCGGAGCGTACTTGGA CACTAGACGCTCGGTATCTGGTGGAGTCGTGATGTTGGCGAAGGGGGCGA TAAGTTGGCACTCTAGGATGCAGGAGATAATAGTATCGGGTACTTCGGAA GCAGAGTACGTCGCACTGTCGGAATCAGTTAAGGATGCGATTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9141:4948..6145+

>mRNA_H-paniculata_contig9141.16962.1 ID=mRNA_H-paniculata_contig9141.16962.1|Name=mRNA_H-paniculata_contig9141.16962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at H-paniculata_contig9141:4948..6145+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAATCACGGACTATGGGAGCAGATAGCCCAACCAAAGAACAAGCT
TGCGGTGGGAACGAAGGTGCTTTACAAACGCAAGGTCAGCAAGGGCGGCA
AGGTGGAGAAGTACAAATGTAGACTTATGGTAAATCACGGACTATGGGAG
CAGATAGCCCAACCAAAGAACAAGCTTGCGGTGGGAACGAAGGTGCTTTA
CAAACGCAAGGTCAGCAAGGGCGGCAAGGTGGAGAAGTACAAATGTAGAC
TTGACGGAGATCTGCGACAATTCGACGCTGAGCAGGCGTTTTTGAAGGCG
GACATTGACGAGGAGGTATACATCGAGATCTCCGGAAGGTTCCGACATTT
CCCGGGAGTAGTGGGTAAGCTGAACAAGGCAATCTACCGGCTCGTTCAGG
CGCGGCGATGCTGGAACATCAAGTTCTGCGACGGCATGACGGCAATCGGG
TTCAAGCAGTCAAGGGCAGACCCATTTATGTTCAGGAAGGTGGTCGACGG
AGAAGTGGCAATGGTGGTCATCGTGCACGTGGACGACATTCTTGCCCACG
CAAAGGGCCGCGCGACAATGGAGTGGTTCGCAACCCAGCTAGGGGGAAGG
TTCAAGCTGAAAGACTTGGGTGACGCCGAGTTCTACATGGGTTGTCACCT
TACCCGAAACAGGAAGGCGCGCGAGCTGAAACTCGATCAACACATGTATG
TGCAGTCGATGGCGGAAAAATTCGGGGTCGAGAAGATGAGGAGGATATCA
GCCATGTCGTTAGCATCAGCACTATTAAATGGGGACGAACTGAAGACCCG
GGACGAGAAGGAGGAAATGACGAAATTTCCATATCGAGACGTAGTAAGGG
CGCTAGTGTGGACGGCGACGATGACGCGACCGGATATAGCGTACGCAGTA
CGTGGCGTTGCAAGGTTCTGCGAAAACCCCGGGTCAGCACACAAGAAGGC
AGTGATTAAGATAGTGCAGTGTTTATTACACACGATGGAATGGGGCATCA
AATATGGTGGGCAAGGCTGTGGGCTTAGCATAGAAGCATATACAGAGTCG
GATTTCGGAGCGTACTTGGACACTAGACGCTCGGTATCTGGTGGAGTCGT
GATGTTGGCGAAGGGGGCGATAAGTTGGCACTCTAGGATGCAGGAGATAA
TAGTATCGGGTACTTCGGAAGCAGAGTACGTCGCACTGTCGGAATCAGTT
AAGGATGCGATTTTTTAAGACGGAGATCTGCGACAATTCGACGCTGAGCA
GGCGTTTTTGAAGGCGGACATTGACGAGGAGGTATACATCGAGATCTCCG
GAAGGTTCCGACATTTCCCGGGAGTAGTGGGTAAGCTGAACAAGGCAATC
TACCGGCTCGTTCAGGCGCGGCGATGCTGGAACATCAAGTTCTGCGACGG
CATGACGGCAATCGGGTTCAAGCAGTCAAGGGCAGACCCATTTATGTTCA
GGAAGGTGGTCGACGGAGAAGTGGCAATGGTGGTCATCGTGCACGTGGAC
GACATTCTTGCCCACGCAAAGGGCCGCGCGACAATGGAGTGGTTCGCAAC
CCAGCTAGGGGGAAGGTTCAAGCTGAAAGACTTGGGTGACGCCGAGTTCT
ACATGGGTTGTCACCTTACCCGAAACAGGAAGGCGCGCGAGCTGAAACTC
GATCAACACATGTATGTGCAGTCGATGGCGGAAAAATTCGGGGTCGAGAA
GATGAGGAGGATATCAGCCATGTCGTTAGCATCAGCACTATTAAATGGGG
ACGAACTGAAGACCCGGGACGAGAAGGAGGAAATGACGAAATTTCCATAT
CGAGACGTAGTAAGGGCGCTAGTGTGGACGGCGACGATGACGCGACCGGA
TATAGCGTACGCAGTACGTGGCGTTGCAAGGTTCTGCGAAAACCCCGGGT
CAGCACACAAGAAGGCAGTGATTAAGATAGTGCAGTGTTTATTACACACG
ATGGAATGGGGCATCAAATATGGTGGGCAAGGCTGTGGGCTTAGCATAGA
AGCATATACAGAGTCGGATTTCGGAGCGTACTTGGACACTAGACGCTCGG
TATCTGGTGGAGTCGTGATGTTGGCGAAGGGGGCGATAAGTTGGCACTCT
AGGATGCAGGAGATAATAGTATCGGGTACTTCGGAAGCAGAGTACGTCGC
ACTGTCGGAATCAGTTAAGGATGCGATTTTTTAA
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