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Homology
BLAST of mRNA_H-paniculata_contig9139.16959.1 vs. uniprot
Match: D7FY80_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80_ECTSI) HSP 1 Score: 132 bits (332), Expect = 2.830e-30 Identity = 120/285 (42.11%), Postives = 140/285 (49.12%), Query Frame = 1
Query: 568 RFRKVAARCRAAGCRSRPWFGLSGTKTPKACKLHKADGEVNVYSPTCEQDDCNTRPTYGVDQGCARFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGARATHXXXXXXXXXXXXXXXXXXXXXXXXXXSMSATVASLSARSRESERTENLN-------ISVKGPATYCVAHAPKGAMNVSAKRCRHPG-CDIQPTFGHEGRGEPPSCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPRXTFCLRHAEPDMINVRHPSARKIVLGNKRKQRQERKGESR 1398
R RKV ARCR GC RPWF G++ P+ACK HK +GEVNVY+P CE D C TRP YG D G ARFXX XXXXXXXXXXXXXXXXXXXXXXXXXXS S VA+ ++ E + TE + GPA YC AHAP GA NV+A RCRHPG C +QP FG EG G+ P FC H +P M +VR+P R +G + R R+G+ R
Sbjct: 17 RCRKVGARCRFEGCTGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADACTTRPHYGADGGRARFXXKHKLDGMVDVLNKRCAKKGCRRQPSWARERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSE-DNTETTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQPK--------------------------------------FCALHRKPGMTDVRNP--RCTAVGCTAQPRCGREGDPR 260
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 3097 |
| Cds size | 1146 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig9139.16959.1 >prot_H-paniculata_contig9139.16959.1 ID=prot_H-paniculata_contig9139.16959.1|Name=mRNA_H-paniculata_contig9139.16959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=382bp
MSTTNTITTTTATITTITRQSRAIPFSITASHENIQTPAKTIKTATSSQQ ELSKRKRSRKAAIAAPTPAPHSCSPCHPLVSTTTTPDPGLISAPAAAKTG KRFRKVAARCRAAGCRSRPWFGLSGTKTPKACKLHKADGEVNVYSPTCEQ DDCNTRPTYGVDQGCARFCRLHKIEGMVDVLNKKCAAEGCRKQPSWAVDR GARATHCKDHKLEGMVDTKHQTCAHPGCHVFPSMSATVASLSARSRESER TENLNISVKGPATYCVAHAPKGAMNVSAKRCRHPGCDIQPTFGHEGRGEP PSCCAQHMESGMTDIRNPRCHAPGCIAQPRCAKEGDPRPTFCLRHAEPDM INVRHPSARKIVLGNKRKQRQERKGESRVAN* back to topmRNA from alignment at H-paniculata_contig9139:1826..7558- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig9139.16959.1 ID=mRNA_H-paniculata_contig9139.16959.1|Name=mRNA_H-paniculata_contig9139.16959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5733bp|location=Sequence derived from alignment at H-paniculata_contig9139:1826..7558- (Halopteris paniculata Hal_grac_a_UBK monoicous) GACACACTACTCTATGTCATTTCTCGCACGAACCACACCGCAGACAGCAC
TAGCATATAATACAGAAGTGTACTTCACGTGATCAGGTAGAGGGGTAACG
GACGGATATTACGTTGGGCTGTGATAGGGCTCGACAGGGGCTGCTTCAGG
ACAGCGACATTAGCCAAGTATATTCCTGTTCCTGTGAGAGGTGGGGTGTT
CCTGTTCAAGTGTCCTGGGCAAACTTCGCCACATTCTTTAGAGGCAAGGT
CAGAGGTCTGGGCTATGAGTACCACCAACACCATCACAACCACCACAGCC
ACCATCACCACCATCACGAGACAGTCACGAGCAATCCCCTTCTCGATCAC
GGCTTCCCATGAAAATATCCAAACGCCTGCAAAGACCATCAAAACAGCAA
CATCGTCTCAGCAGGAATTGAGCAAGCGAAAACGATCTCGCAAGGCCGCG
ATAGCAGCACCAACACCTGCACCACATTCCTGTTCACCCTGCCACCCTCT
GGTGTCCACCACGACCACCCCAGACCCAGGATTGATCTCAGCTCCCGCAG
CAGCGAAGACGGGAAAACGATTTCGAAAGGTCGCCGCTCGCTGCCGTGCC
GCCGGTTGCCGCTCTCGGCCTTGGTTTGGTCTCTCCGGAACAAAGACGCC
CAAGGCTTGCAAGCTCCACAAGGCTGACGGAGAGGTCAACGTGTACTCGC
CGACGTGCGAGCAGGACGACTGCAACACACGGCCGACCTATGGGGTGGAC
CAGGGCTGCGCTAGGTTCTGCCGCTTGCACAAGGTCGGAGTGTTCATTGT
GAAGGGCGGGGGGGGGCGTGGCGGGTCGGAGGTGCCAGTAGCTTCGGTAT
TTAGTCGGTGCTCTCTAATTGCTGTTCGTGTGCGCGTGTCAACATGAGAG
GCACCCAGAACTCTTTACCCTGAAAAATCGTGCTCGCAGGCGGCTTTGTG
CCTAGTAGAAGGATTTCTGCATCGTATCTGTGGTGTGAGTGCTAGCGTCG
GTGGCTGTGGGATACGTAGCCTAGACTGTGCACGATCTGCTCGTTTTTTA
CTGCGCGACATGGATGGTATCTCGCACATGGCCGCTTACCCATCCCTCAG
CCCTGAGCGAACTCACACCAAGCTCATCTATTGGTTGTAGTGACAAGGTG
TACTGTGCGCCAAGGGAAAAGACCAAACAAGTTTTTGTTTTTTTTCCGTG
TTTTCTGTCGTGATTGTTCCACAGACTGCCTGGGCTGCCCCCTTTTCCCC
TACACTTGAGTGTGGTGTCTGTAGAGATCGGGGCAGGGTGTTCGTCCTGA
CACCCATGCGCCGCCCTCGCTCGTTTTGTTTGGTTGAATACCGATATAGA
TAGAAGGAATGGTGGATGTTCTAAACAAGAAATGTGCCGCCGAGGGGTGT
CGGAAGCAGCCAAGCTGGGCAGTTGACAGGGGAGCTCGAGCGACGCATTG
CAAGGTATAGCACAGTATTGGACAGTAGGGGTCAACCACGACGTGGAGCA
ACTTGAATGTGTGAAGTCTTTGAAAATTAGAGTTGACAAGCCCGAGGACT
GGTGCAAGCAACACGCCGGTTCCATTCAAGGCTGTTCATGAACGGAGGAA
AAAAATAGAGAAAATTCGATACCCGGTTTTGTCAACGCGGATGCGACCAT
ACTGTGCCAGAGTGGTCGTATGGGCATCGGCCAATCGCAGAGGCTGAAAC
TTGGAAACTTCTCAGTTGGAACTCCATATGCGCTTTTTCTTCCTTCGTTA
ATAATGTGCGGTCTTCAAAGAGCTGAACATCATGCAACGGCACTCCTTTC
TCTGCGACCAAGGGTTGTTCGTCGGTATGAATGTGTCATCGAGAACAGCA
CTTGTGACAAAGGATTCAACATTTCGTATCGGGGACGTTGCTACAGTAGC
GAGAAAGAGTCGTGTGTTCTTTCCACCCCGGAGAGATGCAACCTCTGTTA
ACATACTTCGTAAGTGCTGTGAGGGAAGAAGCTTAAGCCCACGACTAAGT
ATCAAGTACGAAGTCCCGATTTAGATCCCCGAATAACTCAGGTTACTGAT
CACGTCGGTCTCCCCTCGGTTCTACGCTCAAGAACCGAGGGAATTGTAGG
ATAGCCGTTGTACGAGACTTGTCCGTTTTGGCGTTCGGTTTTAGACTGCC
CTTTGAGAAGCAGAATCCGTACTCGTTAAAATCCTTGATCACACTTGCGT
CCAGTCATCGGCAATGGGTTACCCCTAGCCGTGTCCTACCCGTTAGGGCT
TAGACTCGTTCAGAGTCGTGTGTTATTTCGGTTTTTGCTCCGGGCGTGAA
GGCTCGGTTTGTCGTCGATCACTGAGAGAAAAAAACGGTTCTGTTGCAGA
AGTATTTTTACCCTTGATGCTGCGATTCGGTCTTCAGTAAAGAGGTTCAT
GTTGGCTTGCCCGCGGGTGACGGATTCATGAAAGCATTCGCGAACGGTGT
TTCTCAGCGCAGCACGAAGCACCGCAGCCTCAATTTCGCAGCGATTTTTC
ACGGTTATCGGGGCGTTGACGTAACATTGCAAATCAGGTTGCAACATGAC
CTGCTGCTTGGACAAACTTTCACGGTTTCATGTTGCAATTCGCCCGATCT
CTGTGGTGAGTGCAGTAGGTACGCTGGGATGGTCCACACTCTGCACAACG
AATCACCCCCCCCACCCTCTCTAACGTAAAAACTGTAAAATCACCACTTC
TGTTATCCCCCTGTCCCCCGCCACCGCTGCCTCCTGCCCACCAAACTACT
TTTCCCCGGCCTTTCATATGCAAAGGACCACAAGCTAGAGGGAATGGTCG
ACACGAAGCACCAAACCTGCGCACATCCAGGGTGTCACGTTTTCCCCTCT
ATGAGCGCCACCGTCGCAAGCTTGAGCGCTCGAAGCCGCGAAAGTGAAAG
AACGGAGAACCTCAACATTAGCGTGAAAGGTCCGGCGACGTACTGTGTTG
CGCATGCTCCCAAGGGCGCGATGAACGTTAGTGCGAAGCGCTGCCGACAC
CCAGGTTGCGATATACAACCGACATTCGGACATGAAGGCCGGGGAGAACC
ACCTTCGTGCTGCGCGCAGCATATGGAGTCGGGGATGACAGACATTCGTA
ATCCTAGGTGTCACGCGCCGGGATGCATTGCGCAGCCTCGGTGTGCCAAG
GAGGGGGATCCTCGCCCAACGTTTTGTCTCCGGCACGCCGAACCGGACAT
GATCAACGTCAGGCAAGTGGAGACGTGTTCTGTGGTCGTGTATGGATAGA
TTAGAATGTGCATCCTCCTCTAACGAGTATATGGCCGCTTTCGGTTGTGT
GCAGGTGTGTGTGTCCTCCTGGATCCAACAACGTTGCATAACCGCAACAT
CATGTGTGCGCGGCGAGGTCGGGCTTCGCTTGAACGTTCTCCATGCGTGG
TGATCGGAACGAATTGGCTCTCGAAACTTCCATGCTTAATATGACTCTTC
GCAACAGGCGGTTGTAGGGGGGACCAAATATGGTTGATTTGATCTTACCT
CCACGCAAAGTTATGAAATCCAGGGGCTTCCTCCAGATGTCGGCTCGATA
CTATAGTTTATAAGCTATGTCATCGCGGGTTGGAGAACATAAAGGGCGAG
AAGCAAAGCCGTGTATTGCCTCTTGAATCAGAGTGGGAGTCATTGGGTTG
GTCGGGAGAGTTTAGGGAAACTAGTCATTTGGGTCGACTTATAGTCGTGG
GATTAGCCAACCGTAGTTGTGGGATTTTCAGATAATTAGTCTTATGGTTC
AACCACCTCCGATTTATTCGTGGCGGAACTTACAGAAACAATGTACAGAA
AAATGAGCTTGAAAATGCTGTCTCCCGTGGGGGGTGATGTGGATCTACCC
TAGTACTATCTACGGTATACAGCAGAAAGAGGCTCCAAGGCGTATCTCAC
TAGTCCCCTATACCTCCCTTGCACCCGTCGCCGTTGCCGCCGCCCGAAAT
TTTCGCACCAGGCATCCTAGTGCTCGAAAGATAGTGCTTGGCAACAAACG
AAAACAGAGACAAGAAAGGAAAGGAGAATCGAGAGTGGCCAATTGAGGAT
GACTGAGGTGTACGCACCGAATTGACGCAGTTGTGCAGAGTTTGGCAGCG
AAGTCTTTCTCACCCAGTTCTGTATGGCGTAGTGTAACAAACCGTCACAT
TTTGCGGGTAGAATTACTGCAGGTTGTCCAAAACGACGCGTATAAAGTTC
GGGGTTGGTGCATATCCACTGTGCTGTCAAAATTGTGTGTTGTTTTGTTG
ACATTTGAAACCGTGGATTAGAGTGTAATTTGGCTTTGTGTCCATGGTGA
TTGGGTGGCGTACGTTTTGTTGACTATAGGTCGTTATGAAGTACAAATAA
CAGGTGTGTCGGTGGTCGTTGCCGTTGTGCTCCATGCCCTAGCTCACTCT
TTTGGCCGACCCCTACGGTACTAGCGCTATTCCAAGAGCTAGCGTTGCGG
CCACAACATACAAAACTCAAAAGATGCTGCTCGACACCAGCACGCTTTTC
GTGTGCCCGGAAGTTTGGTTATTGGAGGGAGGAAATGTCTCCTTTCGCAG
GCGCGGTACCAAAGTGCTGTCATATTGTACAACCACGTATGACAGGCGTG
TCATTATTTCGCGCAGATGCGCCAAAAGAACGACTAGGAGGGGGGGGACA
TGTGGGACGGTTTTATGTTGCCCTAAACGACGCTGACGGGATGGCTCTGA
TCTGACAATAGTACAGCACAATACGGATATTCCCAGCGAAGCACAGCAAC
AGACCGACCACAACGAGAAGTTTAAGTGAGCCCTATCGTACAGCAAAGGT
GAAAAATGGAAGCATGTAAGATTGGAGAAGTGTCAATAACCGACCATCAA
CCAAAGCGGAGGTGTGCTCAGTTTATTTTAAAATATTGACTTCGAGCTGT
TTGGATTGAAGGGGGGGTAATACGATGACAAGAATATTTGGGATTTGGGA
GACCCTGGGCTCATCGATGTTCATGAAACTGGATACCTAGTCATGCTTTT
CATCTGTTTCGGCAAATCTTCGAAACTACTGATACTCGGGGTTGGGGGGT
CATATTTTTTGTTGGGATTGAAGTTTCGTTGAATTTGAATGGAATACTTC
GAAAATGGTGTTAGCGAAAGGCACTTTCCGTGCGCACTTGCGTGGGAATC
GAGGTATGAAAAGGTTTCCAAGCTCATTGTGCAGAGAAGATAGCAGTGAG
ATAGACACCAACTCTCCCCGGAATGTGCCTTTCGTTAGCACCATCTTCGG
AGTATTCCATTCAATTTCAGTGGAATTTCAATCCCAACAAGAACTTGATA
CCCAATCTCGAGTATCACTTGAGCCCTCAGGGCTGAGGACATTGTGGACA
AAAACGCGCAAATTATACGAAAAAAGGTCAGATGCAGCCAATTAGAGCCA
GTTAGACCTGTTTTCTGTGGAACTGGTGTTCCTCGGCCATGAGGCGATCA
AATGATACACTCGTTTTCGTCTGGGGGCAGCCATTTCTCAGCACTGAGGG
ATGAATTTGATGCATACACTGTTGCTATTTTTCTGCGCTGCTGGCGTCCC
TCAGCCCCGTGAGATCAGCTAAATCTCCCTAATTTTCCACAAAAAAATAG
AACATTTTCAAATTCGACATTTCACCCTTCCCTTCAGGTAAAACGGGTCT
TCTCGAGCCAATATATCCACGAAGGAATGACCCACCTCTCGCGCTACACC
GATGTGCATATATGCACACACGAACAATTTGTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig9139:1826..7558- >mRNA_H-paniculata_contig9139.16959.1 ID=mRNA_H-paniculata_contig9139.16959.1|Name=mRNA_H-paniculata_contig9139.16959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2292bp|location=Sequence derived from alignment at H-paniculata_contig9139:1826..7558- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGAGTACCACCAACACCATCACAACCACCACAGCCACCATCACCACCAT CACGAGACAGTCACGAGCAATCCCCTTCTCGATCACGGCTTCCCATGAAA ATATCCAAACGCCTGCAAAGACCATCAAAACAGCAACATCGTCTCAGCAG GAATTGAGCAAGCGAAAACGATCTCGCAAGGCCGCGATAGCAGCACCAAC ACCTGCACCACATTCCTGTTCACCCTGCCACCCTCTGGTGTCCACCACGA CCACCCCAGACCCAGGATTGATCTCAGCTCCCGCAGCAGCGAAGACGGGA AAACGATTTCGAAAGGTCGCCGCTCGCTGCCGTGCCGCCGGTTGCCGCTC TCGGCCTTGGTTTGGTCTCTCCGGAACAAAGACGCCCAAGGCTTGCAAGC TCCACAAGGCTGACGGAGAGGTCAACGTGTACTCGCCGACGTGCGAGCAG GACGACTGCAACACACGGCCGACCTATGGGGTGGACCAGGGCTGCGCTAG GTTCTGCCGCTTGCACAAGATGAGTACCACCAACACCATCACAACCACCA CAGCCACCATCACCACCATCACGAGACAGTCACGAGCAATCCCCTTCTCG ATCACGGCTTCCCATGAAAATATCCAAACGCCTGCAAAGACCATCAAAAC AGCAACATCGTCTCAGCAGGAATTGAGCAAGCGAAAACGATCTCGCAAGG CCGCGATAGCAGCACCAACACCTGCACCACATTCCTGTTCACCCTGCCAC CCTCTGGTGTCCACCACGACCACCCCAGACCCAGGATTGATCTCAGCTCC CGCAGCAGCGAAGACGGGAAAACGATTTCGAAAGGTCGCCGCTCGCTGCC GTGCCGCCGGTTGCCGCTCTCGGCCTTGGTTTGGTCTCTCCGGAACAAAG ACGCCCAAGGCTTGCAAGCTCCACAAGGCTGACGGAGAGGTCAACGTGTA CTCGCCGACGTGCGAGCAGGACGACTGCAACACACGGCCGACCTATGGGG TGGACCAGGGCTGCGCTAGGTTCTGCCGCTTGCACAAGATAGAAGGAATG GTGGATGTTCTAAACAAGAAATGTGCCGCCGAGGGGTGTCGGAAGCAGCC AAGCTGGGCAGTTGACAGGGGAGCTCGAGCGACGCATTGCAAGATAGAAG GAATGGTGGATGTTCTAAACAAGAAATGTGCCGCCGAGGGGTGTCGGAAG CAGCCAAGCTGGGCAGTTGACAGGGGAGCTCGAGCGACGCATTGCAAGGA CCACAAGCTAGAGGGAATGGTCGACACGAAGCACCAAACCTGCGCACATC CAGGGTGTCACGTTTTCCCCTCTATGAGCGCCACCGTCGCAAGCTTGAGC GCTCGAAGCCGCGAAAGTGAAAGAACGGAGAACCTCAACATTAGCGTGAA AGGTCCGGCGACGTACTGTGTTGCGCATGCTCCCAAGGGCGCGATGAACG TTAGTGCGAAGCGCTGCCGACACCCAGGTTGCGATATACAACCGACATTC GGACATGAAGGCCGGGGAGAACCACCTTCGTGCTGCGCGCAGCATATGGA GTCGGGGATGACAGACATTCGTAATCCTAGGTGTCACGCGCCGGGATGCA TTGCGCAGCCTCGGTGTGCCAAGGAGGGGGATCCTCGCCCAACGTTTTGT CTCCGGCACGCCGAACCGGACATGATCAACGTCAGGACCACAAGCTAGAG GGAATGGTCGACACGAAGCACCAAACCTGCGCACATCCAGGGTGTCACGT TTTCCCCTCTATGAGCGCCACCGTCGCAAGCTTGAGCGCTCGAAGCCGCG AAAGTGAAAGAACGGAGAACCTCAACATTAGCGTGAAAGGTCCGGCGACG TACTGTGTTGCGCATGCTCCCAAGGGCGCGATGAACGTTAGTGCGAAGCG CTGCCGACACCCAGGTTGCGATATACAACCGACATTCGGACATGAAGGCC GGGGAGAACCACCTTCGTGCTGCGCGCAGCATATGGAGTCGGGGATGACA GACATTCGTAATCCTAGGTGTCACGCGCCGGGATGCATTGCGCAGCCTCG GTGTGCCAAGGAGGGGGATCCTCGCCCAACGTTTTGTCTCCGGCACGCCG AACCGGACATGATCAACGTCAGGCATCCTAGTGCTCGAAAGATAGTGCTT GGCAACAAACGAAAACAGAGACAAGAAAGGAAAGGAGAATCGAGAGTGGC CAATTGAGCATCCTAGTGCTCGAAAGATAGTGCTTGGCAACAAACGAAAA CAGAGACAAGAAAGGAAAGGAGAATCGAGAGTGGCCAATTGA back to top
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