mRNA_H-paniculata_contig913.16954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig913.16954.1
Unique NamemRNA_H-paniculata_contig913.16954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig913.16954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig913contigH-paniculata_contig913:10185..11212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size212
Cds size126
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig913.16954.1prot_H-paniculata_contig913.16954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig913 10185..11126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.054853-CDS-H-paniculata_contig913:10184..102171622931138.054853-CDS-H-paniculata_contig913:10184..10217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig913 10185..10217 -
1691481607.7579033-CDS-H-paniculata_contig913:10184..102171691481607.7579033-CDS-H-paniculata_contig913:10184..10217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig913 10185..10217 -
1622931138.0717757-CDS-H-paniculata_contig913:11033..111261622931138.0717757-CDS-H-paniculata_contig913:11033..11126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig913 11034..11126 -
1691481607.7670567-CDS-H-paniculata_contig913:11033..111261691481607.7670567-CDS-H-paniculata_contig913:11033..11126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig913 11034..11126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.0871959-UTR-H-paniculata_contig913:11126..112121622931138.0871959-UTR-H-paniculata_contig913:11126..11212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig913 11127..11212 -
1691481607.7759364-UTR-H-paniculata_contig913:11126..112121691481607.7759364-UTR-H-paniculata_contig913:11126..11212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig913 11127..11212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig913.16954.1

>prot_H-paniculata_contig913.16954.1 ID=prot_H-paniculata_contig913.16954.1|Name=mRNA_H-paniculata_contig913.16954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MRPALCTSPRSCPFCASRPLMAARGHFIIAHVSRCLHRNRSG
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mRNA from alignment at H-paniculata_contig913:10185..11212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig913.16954.1 ID=mRNA_H-paniculata_contig913.16954.1|Name=mRNA_H-paniculata_contig913.16954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-paniculata_contig913:10185..11212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTAACTTGACTACTGGCCAACTTCAGAGCTAATTGTCTCGCCGAGAG
TAGTTCCTGGCGTTGGTTTGGTCTCGTCAAAAGAATATGCGCCCTGCCCT
GTGCACGTCACCACGTTCATGCCCTTTCTGCGCTTCACGTCCACTAATGG
CAGCAAGAGGGCATTTTATCATCGCGCATGTAGGTTATATCGCCAATATA
ACATGCCGCTCATAGCTTCCAATTCGACTAACCATGGTGTCGGCATGTCT
GAACACAGTACATTATATTCTGCACTTCCTATGTTTTAAGTAATTTTGTC
AGCGATCAAAAGTGTACTGTAGTCGTAAGGTAGAGTAGTAGTCCAACCTC
GTAGGGTAGAATCTAAAATCGTGTCTAAAGCAGACTCACCTGATCATCTT
TCAACACCCGTACTCCCTCCAGTTGGTGAAACACCGGGTAGTGCGTACTA
TCTACTTCGTCGCGCCTGTAAACATCTCCGCACACCAGGAATGCATCATG
CCCTTTCCGAAGAAGTGCAGTCTGATGTGCGCTAGTATGGCACCTGAGAA
CTCGCTTTGTGTCCACATAGTATGTGTCTGAAGGTCTACGGCTCACGTGA
TCCACCGGAATGAGGAGTTCATCGAAATTTTGCTCAACCGTCACAATCGG
AGACAGGCTGTCGAAAATCTGGAATGTTGGCAGCCCCTGAACAGTCGAGC
TCGTTTGGAAATAATTTTCAATCCTGACGACAAGAACCGATGCAATTGGG
GGTGATAGGAAACCATTGAGGTGTGTGAGCGTTGTGCTCAGTACCAATGA
AACTTCCAGGTCGACTATCATTTTTCGTTGTCTTCGTCACGGATCAACTG
TGCTGTCGGTACCTCTGGTCCTGTAGTATCGCGCGGTGGAGGCAGCAGTA
CCACTCGCTCGGCAACATTGTAGTTGATGGCGGTGTGCCACGAGAGTATT
ATTGTTGACATTTTTCCTGGAAATGCTCTTTTTTTCTCATGACAGGTAAG
CAGATGTCTCCACAGAAACCGCAGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig913:10185..11212-

>mRNA_H-paniculata_contig913.16954.1 ID=mRNA_H-paniculata_contig913.16954.1|Name=mRNA_H-paniculata_contig913.16954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig913:10185..11212- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCCCTGCCCTGTGCACGTCACCACGTTCATGCCCTTTCTGCGCTTC
ACGTCCACTAATGGCAGCAAGAGGGCATTTTATCATCGCGCATATGCGCC
CTGCCCTGTGCACGTCACCACGTTCATGCCCTTTCTGCGCTTCACGTCCA
CTAATGGCAGCAAGAGGGCATTTTATCATCGCGCATGTAAGCAGATGTCT
CCACAGAAACCGCAGCGGGGTAAGCAGATGTCTCCACAGAAACCGCAGCG
GG
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