mRNA_H-paniculata_contig9118.16947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9118.16947.1
Unique NamemRNA_H-paniculata_contig9118.16947.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.530e-24
Identity = 52/88 (59.09%), Postives = 60/88 (68.18%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLV 264
            D  LPA+KEKMPWL  + VV QQDGA+ HT K  P  LN  G   GW V  +TQPAQSPDLNINDLG FAS++ RV      +ID+LV
Sbjct:  277 DVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.290e-22
Identity = 43/125 (34.40%), Postives = 75/125 (60.00%), Query Frame = 1
Query:   22 KEKMPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGT--IDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQH 390
            KEKMPW+ +  +  Q DGA  HT   +  +++     EGW++  + Q AQSPDLN+ DLG F S++ +V++ + G   ID+L++ V+ +Y  Y   TL+ +W      + ++ +A+G N+++  H
Sbjct:    4 KEKMPWMRNRRLKIQHDGARPHTAGGLEDEVHATASTEGWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPH 128          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: A0A6A4ECW5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ECW5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.320e-21
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 DSFLPALKEKMP-WLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKS 435
            +  +PA+K K P W +   +V QQD AT H +   P  L   G  +GWN+    QPA SPDLN  DLG+FAS+++   RE C  I  L++A++  Y A +   L+ +  +L      V +A G NE+++ H    K +R G LP S
Sbjct:  298 EHIIPAIKSKWPVWDKSSPIVIQQDNATPHCQPTDPDILA-AGVADGWNIRLAFQPANSPDLNTLDLGYFASIQALPYREDCCDIVQLIQAIRKSYAALEVYKLDNITLTLQSSMECVMRAAGSNEYKLPHAGKSKIRREGKLPHS 442          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499)

HSP 1 Score: 95.5 bits (236), Expect = 7.270e-21
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV 438
            +  LPA+K K P    +++  QQD A  H   +  R+  E    +G+N+  + QPAQSPD+NI DLGFF +++S   +    ++  L+EAV+N Y A D+  +   W  L     ++ Q  GGN ++  H   KK +R G LP  +
Sbjct:  125 EDLLPAIKSKWPSNACKDIWIQQDNARPHISPN-DREFLEAATQDGFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERLGLLPTEI 269          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: A0A6G0WF09_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WF09_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.630e-20
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEE--VVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEV 384
            D  LPA+K K  W  +E   +  QQD A  H+R D    L     D GWN+    QPA+SPDLN+ DLGFF S+++   R  CGTI++L++AVK  +   +  TLE  +++L +    + +  G N F++
Sbjct:   58 DLVLPAIKHKWAWPSNEHGTIFNQQDNAPAHSRLDDAEILAACNSD-GWNIEMRFQPAKSPDLNVLDLGFFNSIQALQQRFECGTIEELIDAVKISFHELERLTLEKTFRTLHRVMQVIIEFKGDNRFKI 186          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: UPI000B797179 (uncharacterized protein LOC110716342 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797179)

HSP 1 Score: 92.8 bits (229), Expect = 3.470e-20
Identity = 53/145 (36.55%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   10 LPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLN--ELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV 438
            +PA+K K P    ++VV Q D A  H    +PR     E     G+N+ FI QPAQSPDLN+ DL  F S++S   +     +D+LV+ VK+ YD +D    + +W +L     ++ +A GGN++++ H   KK +  G LP+ V
Sbjct:   80 IPAIKSKWPESLAKDVVIQWDNARPHK---VPRDAEFIEATTTNGFNIQFIFQPAQSPDLNVLDLALFRSIQSLQYQSFFTDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAEGGNKYKIPHMNKKKLENIGFLPEIV 221          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: UPI000B8AB67D (uncharacterized protein LOC110800636 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AB67D)

HSP 1 Score: 95.1 bits (235), Expect = 5.710e-20
Identity = 50/146 (34.25%), Postives = 77/146 (52.74%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV 438
            D  LPA++ K PW   ++++ QQD +  H   +    L+     EG+N+  I QP QSPDLN+ DLGFF +++S   ++    ++ LV+AVK  Y+AYD   +   W  L     ++    GGN ++  H    K    G LP +V
Sbjct:  375 DELLPAIRSKWPWFASKDILIQQDNSRPHINPNDAEFLD-AATQEGFNIQLICQPPQSPDLNVLDLGFFRAIQSLQHQKFPRDVEALVKAVKEAYEAYDPKLINYTWLQLQYVMLEILGVKGGNNYKSPHKGKAKMDNLGLLPDTV 519          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7)

HSP 1 Score: 94.0 bits (232), Expect = 6.060e-20
Identity = 54/145 (37.24%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   10 LPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLN--ELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV 438
            +PA+K K P    ++VV Q D A  H    +PR     E     G+N+ FI QPAQSPDLN+ DLG F S++S   +     +D+LV+ VK+ YD +D    + +W +L     ++ +A GGN++++ H   KK +  G LP+ V
Sbjct:  193 IPAIKSKWPESLAKDVVIQWDNARPHQ---VPRDAEFIEATTTNGFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIV 334          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: UPI000B778AD2 (uncharacterized protein LOC110722901 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B778AD2)

HSP 1 Score: 90.5 bits (223), Expect = 1.790e-19
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV 438
            +  +PA++   P    + +  QQD A  H   D P  L E  +D G++++ I QPAQSPDLN+ DLGFF ++++   +E   ++++LVE+V   Y +YD   +   W        ++ +  GGN F+  H   K+ QR G LP  V
Sbjct:   63 EEVMPAIRATWPENSCKTIWIQQDNARPHINIDDPEFLEEANKD-GFDMHLICQPAQSPDLNVLDLGFFRAIQAIQHQEFPESVEELVESVLTSYASYDPRIINMTWLHSMYVMEEIMKVKGGNNFKNPHKGKKRLQRLGLLPSYV 207          
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Match: A0A6G0WUD8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WUD8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.360e-19
Identity = 50/130 (38.46%), Postives = 74/130 (56.92%), Query Frame = 1
Query:    1 DSFLPALKEKMPWLEDEE--VVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPDLNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSLFKRYNQVSQALGGNEFEV 384
            D  LPA+K K  W  +E   +  QQD A  H+R D    L     D GWN+    QPA+SPDLN+ DLGFF S+++   R  CGTI++L++AVK  +   +  TLE  +++L +    + +  G N F++
Sbjct:  257 DLVLPAIKNKWVWPSNEHGTIFVQQDNAPAHSRLDDAEILAACNSD-GWNIEMRFQPAKSPDLNVLDLGFFNSIQALQQRLECGTIEELIDAVKISFHDLERLTLEKTFRTLHRVVQVIIEFKGDNRFKI 385          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9118.16947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.530e-2459.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3GU94_9STRA1.290e-2234.40Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6A4ECW5_9STRA1.320e-2137.67Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
UPI000B8AF4997.270e-2134.93uncharacterized protein LOC110800263 n=1 Tax=Spina... [more]
A0A6G0WF09_9STRA2.630e-2038.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI000B7971793.470e-2036.55uncharacterized protein LOC110716342 n=1 Tax=Cheno... [more]
UPI000B8AB67D5.710e-2034.25uncharacterized protein LOC110800636 n=1 Tax=Spina... [more]
UPI000B797FC76.060e-2037.24uncharacterized protein LOC110699849 n=2 Tax=Cheno... [more]
UPI000B778AD21.790e-1934.25uncharacterized protein LOC110722901 n=1 Tax=Cheno... [more]
A0A6G0WUD8_9STRA3.360e-1938.46Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9118contigH-paniculata_contig9118:12..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog161934.XP_010689342.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size441
Cds size411
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.2363262-UTR-H-paniculata_contig9118:11..411622931137.2363262-UTR-H-paniculata_contig9118:11..41Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9118 12..41 +
1691481607.3467512-UTR-H-paniculata_contig9118:11..411691481607.3467512-UTR-H-paniculata_contig9118:11..41Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9118 12..41 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.2505853-CDS-H-paniculata_contig9118:41..4521622931137.2505853-CDS-H-paniculata_contig9118:41..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9118 42..452 +
1691481607.3577366-CDS-H-paniculata_contig9118:41..4521691481607.3577366-CDS-H-paniculata_contig9118:41..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9118 42..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9118.16947.1prot_H-paniculata_contig9118.16947.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9118 42..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9118.16947.1

>prot_H-paniculata_contig9118.16947.1 ID=prot_H-paniculata_contig9118.16947.1|Name=mRNA_H-paniculata_contig9118.16947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MPWLEDEEVVAQQDGATHHTRKDMPRKLNELGRDEGWNVNFITQPAQSPD
LNINDLGFFASMESRVLRERCGTIDDLVEAVKNMYDAYDAATLEGVWQSL
FKRYNQVSQALGGNEFEVQHTENKKRQRAGSLPKSV*
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mRNA from alignment at H-paniculata_contig9118:12..452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9118.16947.1 ID=mRNA_H-paniculata_contig9118.16947.1|Name=mRNA_H-paniculata_contig9118.16947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=441bp|location=Sequence derived from alignment at H-paniculata_contig9118:12..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTCTTTTCTTCCAGCATTGAAAGAAAAGATGCCGTGGTTGGAGGATGA GGAAGTGGTCGCGCAGCAGGACGGAGCGACCCATCATACGAGGAAAGACA TGCCGCGGAAGCTCAACGAACTCGGGAGGGACGAGGGGTGGAACGTCAAC TTCATAACTCAACCTGCGCAGTCACCAGATCTCAACATCAACGATTTGGG GTTCTTTGCATCTATGGAAAGCAGGGTTTTGAGGGAGCGTTGCGGTACTA TAGACGACCTTGTGGAGGCGGTAAAGAACATGTACGACGCATACGACGCG GCAACCTTAGAGGGGGTGTGGCAGAGTCTCTTTAAGCGGTACAATCAGGT CTCGCAGGCGCTAGGAGGTAACGAGTTCGAGGTACAGCACACCGAAAACA AGAAAAGGCAGCGTGCGGGAAGTCTACCGAAATCGGTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9118:12..452+

>mRNA_H-paniculata_contig9118.16947.1 ID=mRNA_H-paniculata_contig9118.16947.1|Name=mRNA_H-paniculata_contig9118.16947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig9118:12..452+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTGGTTGGAGGATGAGGAAGTGGTCGCGCAGCAGGACGGAGCGAC
CCATCATACGAGGAAAGACATGCCGCGGAAGCTCAACGAACTCGGGAGGG
ACGAGGGGTGGAACGTCAACTTCATAACTCAACCTGCGCAGTCACCAGAT
CTCAACATCAACGATTTGGGGTTCTTTGCATCTATGGAAAGCAGGGTTTT
GAGGGAGCGTTGCGGTACTATAGACGACCTTGTGGAGGCGGTAAAGAACA
TGTACGACGCATACGACGCGGCAACCTTAGAGGGGGTGTGGCAGAGTCTC
TTTAAGCGGTACAATCAGGTCTCGCAGGCGCTAGGAGGTAACGAGTTCGA
GGTACAGCACACCGAAAACAAGAAAAGGCAGCGTGCGGGAAGTCTACCGA
AATCGGTCTAAATGCCGTGGTTGGAGGATGAGGAAGTGGTCGCGCAGCAG
GACGGAGCGACCCATCATACGAGGAAAGACATGCCGCGGAAGCTCAACGA
ACTCGGGAGGGACGAGGGGTGGAACGTCAACTTCATAACTCAACCTGCGC
AGTCACCAGATCTCAACATCAACGATTTGGGGTTCTTTGCATCTATGGAA
AGCAGGGTTTTGAGGGAGCGTTGCGGTACTATAGACGACCTTGTGGAGGC
GGTAAAGAACATGTACGACGCATACGACGCGGCAACCTTAGAGGGGGTGT
GGCAGAGTCTCTTTAAGCGGTACAATCAGGTCTCGCAGGCGCTAGGAGGT
AACGAGTTCGAGGTACAGCACACCGAAAACAAGAAAAGGCAGCGTGCGGG
AAGTCTACCGAAATCGGTCTAA
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