mRNA_H-paniculata_contig9117.16946.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9117.16946.1
Unique NamemRNA_H-paniculata_contig9117.16946.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9117.16946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9117contigH-paniculata_contig9117:5436..6039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size605
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.1571443-CDS-H-paniculata_contig9117:5435..57561622931137.1571443-CDS-H-paniculata_contig9117:5435..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9117 5436..5756 +
1691481607.3210497-CDS-H-paniculata_contig9117:5435..57561691481607.3210497-CDS-H-paniculata_contig9117:5435..5756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9117 5436..5756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.1909614-UTR-H-paniculata_contig9117:5756..60391622931137.1909614-UTR-H-paniculata_contig9117:5756..6039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9117 5757..6039 +
1691481607.3314195-UTR-H-paniculata_contig9117:5756..60391691481607.3314195-UTR-H-paniculata_contig9117:5756..6039Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9117 5757..6039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9117.16946.1prot_H-paniculata_contig9117.16946.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9117 5436..5756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9117.16946.1

>prot_H-paniculata_contig9117.16946.1 ID=prot_H-paniculata_contig9117.16946.1|Name=mRNA_H-paniculata_contig9117.16946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
VVPLPSSCPSRTIITAQRYEHLDKGAAASSTFLLIYTFAFLTYTFRIFRR
LLLLLHVWSKATRLPCTGAFHGGKCSTRPVKIPRHLSPTRHLNLIYSKRR
DGHCEF*
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mRNA from alignment at H-paniculata_contig9117:5436..6039+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9117.16946.1 ID=mRNA_H-paniculata_contig9117.16946.1|Name=mRNA_H-paniculata_contig9117.16946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=604bp|location=Sequence derived from alignment at H-paniculata_contig9117:5436..6039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTCCCCTTGCCCTCCTCCTGTCCCTCCCGCACCATCATCACTGCTCA
GCGATATGAACATCTTGACAAAGGAGCTGCAGCTTCGAGCACCTTTCTGC
TGATCTACACTTTCGCTTTTCTCACCTACACCTTCCGCATCTTTCGTAGA
CTGCTGCTGCTGCTGCACGTCTGGAGCAAAGCCACGAGACTCCCTTGCAC
TGGGGCCTTTCACGGGGGAAAATGTAGCACCAGGCCTGTCAAAATACCAC
GCCATCTTTCCCCGACAAGGCACCTGAATTTAATATATTCTAAGAGAAGA
GATGGTCACTGTGAATTTTAGGGCAGAAACTAGGGCTGCAGCTTACTGGT
GATGAGACACTCACCGACTCGCGATTAATATGTGGCTAAACGCGTTTGGA
CGGGGGGTAGGAAGGATATCTCTCAAAGAATAGCGTGCCTGTGCCACAAG
TCCGATTACGTAAGCAATGCCCACGGTCTGCGGTCAACAGTGGATATGTT
TGGACGACGTTTCGAGTCTGACACAGCAAATGCAAAAAAATGCGGCGACT
CTGGAATATAACAAGATGACGCATGTTCCCGGTCGACTGAAACTTCAAGT
TATG
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Coding sequence (CDS) from alignment at H-paniculata_contig9117:5436..6039+

>mRNA_H-paniculata_contig9117.16946.1 ID=mRNA_H-paniculata_contig9117.16946.1|Name=mRNA_H-paniculata_contig9117.16946.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig9117:5436..6039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTCCCCTTGCCCTCCTCCTGTCCCTCCCGCACCATCATCACTGCTCA
GCGATATGAACATCTTGACAAAGGAGCTGCAGCTTCGAGCACCTTTCTGC
TGATCTACACTTTCGCTTTTCTCACCTACACCTTCCGCATCTTTCGTAGA
CTGCTGCTGCTGCTGCACGTCTGGAGCAAAGCCACGAGACTCCCTTGCAC
TGGGGCCTTTCACGGGGGAAAATGTAGCACCAGGCCTGTCAAAATACCAC
GCCATCTTTCCCCGACAAGGCACCTGAATTTAATATATTCTAAGAGAAGA
GATGGTCACTGTGAATTTTAGGTCGTCCCCTTGCCCTCCTCCTGTCCCTC
CCGCACCATCATCACTGCTCAGCGATATGAACATCTTGACAAAGGAGCTG
CAGCTTCGAGCACCTTTCTGCTGATCTACACTTTCGCTTTTCTCACCTAC
ACCTTCCGCATCTTTCGTAGACTGCTGCTGCTGCTGCACGTCTGGAGCAA
AGCCACGAGACTCCCTTGCACTGGGGCCTTTCACGGGGGAAAATGTAGCA
CCAGGCCTGTCAAAATACCACGCCATCTTTCCCCGACAAGGCACCTGAAT
TTAATATATTCTAAGAGAAGAGATGGTCACTGTGAATTTTAG
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